| Definition | Rhodopseudomonas palustris TIE-1 chromosome, complete genome. |
|---|---|
| Accession | NC_011004 |
| Length | 5,744,041 |
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The map label for this gene is 192289487
Identifier: 192289487
GI number: 192289487
Start: 1130069
End: 1131289
Strand: Reverse
Name: 192289487
Synonym: Rpal_1064
Alternate gene names: NA
Gene position: 1131289-1130069 (Counterclockwise)
Preceding gene: 192289495
Following gene: 192289482
Centisome position: 19.7
GC content: 58.39
Gene sequence:
>1221_bases ATGCCACTGTTTGGTCCGCCTCCCGCTCGCGATCTGAGGCTCGATCTGTTTCGGGGATTGGCGAACTGGGCCATCTTCTT CGGTCACATTCCCGGAACGGCGCTCGCGTGGTTGACCTCGCGAAATTACGGTTTCAGCGACGGGGCTGATTTGTTCGTCT TCATTTCCGGTTACACCACCGCACTGGTGTTCGGCCGGATGATGGCGCAACGCGGCTTCCTGATTGGCGCAACCCGCCTG CTCAAACGCGTCTGGCAACTCTACGTCGCATACGTCCTTCTCTTTATCTTCTATCTGACCTCGGTTCACTATTTGGCCCA TCGTTTTGACATCGGCCACTTGATGGACCAGTTCAACGTTGCACGTCTGATGGAATTCCCGGTCGAGACATTGGCCGAAG GGCTGATGCTGAAGTTCAAGCCGCTCAATCTCGACGTGCTTCCTCTCTACATCGTCTTGATGGCAGCGTTTGTGCCGATC CTGTGGCTGATGTTGCGGCACCGAAACTGGGCGCTTGCCGGATCGCTGCTGCTGTACCTTGCCGCGAGAGCCTTTCATTG GAATCTCCCCTCATATCCGTCCGGGGGGTGGTTTTTCAATCCATTCACCTGGCAGCTGCTGTTCGTGCTGGGCGCATGGT TCGCCGCAGGAGGCGCCCGAGACGTCCGCGCCATCGTCACAGCTCGGACGGCCTTGGTCGTCAGCGTCGGCTTTGTGCTG TTTGCTTTGGTGGCAACGCTCGCCACGCTGATCCCTGCGATGGACGTCCCGATCGTGAGCCAGTTGACCCAGGCCTTTCG TCCCAACGATAAGACCAATCTTGCTCCTTATCGCGTCCTCCACCTCATGGCGTTGGCGCTGCTGGCGGTGAGGTTCATTC CAATCGATTGGCCGGGACTTCGCTGGCCGATCTTTCGTCCCCTTATCACTTGCGGCCAGCAATCTCTCGAGGTCTTCTGC GTCGGGGTCTTTCTGGCATTTATCGCGCACTTCGTCTTGGAAACCACGTCACAATCCTTCTTCGCTCAGCTTCTGGTGGG GGCCGCCGGTCTGTCGGTTATGACGGGCGTCGCCTACTACCGTTCCTGGTCAAAACAAATTGACAAGGCGCCAATTACCA CGGCGAAACGGCCTCCGGCGACGCAAAGCTCGCAGCTCCCTCCCCAAGAGGTCGCGGCTGACCAGACGACGTCAAACGAA ATGCGCGGGAATGCGAGCTGA
Upstream 100 bases:
>100_bases TGAGCGTGGAGTGGTTCTCGTCGCACAACGACCGACCTGAGTAGCCGTTTTGCGAACGACATCGCCGGCTTGCAGCCCTC TGACATTCTGGAATATTCCA
Downstream 100 bases:
>100_bases TGACCGCTTACTTATCAGGCCTCGTCGTCAGGTGTGCTGCGTCGTCGTCCGTCTTGACGGCAGCTGCTGCCCGTCATTGC CCAATCGCCGGACGAAGCGT
Product: hypothetical protein
Products: NA
Alternate protein names: Transmembrane Protein; Transmembrane Protein OpgC
Number of amino acids: Translated: 406; Mature: 405
Protein sequence:
>406_residues MPLFGPPPARDLRLDLFRGLANWAIFFGHIPGTALAWLTSRNYGFSDGADLFVFISGYTTALVFGRMMAQRGFLIGATRL LKRVWQLYVAYVLLFIFYLTSVHYLAHRFDIGHLMDQFNVARLMEFPVETLAEGLMLKFKPLNLDVLPLYIVLMAAFVPI LWLMLRHRNWALAGSLLLYLAARAFHWNLPSYPSGGWFFNPFTWQLLFVLGAWFAAGGARDVRAIVTARTALVVSVGFVL FALVATLATLIPAMDVPIVSQLTQAFRPNDKTNLAPYRVLHLMALALLAVRFIPIDWPGLRWPIFRPLITCGQQSLEVFC VGVFLAFIAHFVLETTSQSFFAQLLVGAAGLSVMTGVAYYRSWSKQIDKAPITTAKRPPATQSSQLPPQEVAADQTTSNE MRGNAS
Sequences:
>Translated_406_residues MPLFGPPPARDLRLDLFRGLANWAIFFGHIPGTALAWLTSRNYGFSDGADLFVFISGYTTALVFGRMMAQRGFLIGATRL LKRVWQLYVAYVLLFIFYLTSVHYLAHRFDIGHLMDQFNVARLMEFPVETLAEGLMLKFKPLNLDVLPLYIVLMAAFVPI LWLMLRHRNWALAGSLLLYLAARAFHWNLPSYPSGGWFFNPFTWQLLFVLGAWFAAGGARDVRAIVTARTALVVSVGFVL FALVATLATLIPAMDVPIVSQLTQAFRPNDKTNLAPYRVLHLMALALLAVRFIPIDWPGLRWPIFRPLITCGQQSLEVFC VGVFLAFIAHFVLETTSQSFFAQLLVGAAGLSVMTGVAYYRSWSKQIDKAPITTAKRPPATQSSQLPPQEVAADQTTSNE MRGNAS >Mature_405_residues PLFGPPPARDLRLDLFRGLANWAIFFGHIPGTALAWLTSRNYGFSDGADLFVFISGYTTALVFGRMMAQRGFLIGATRLL KRVWQLYVAYVLLFIFYLTSVHYLAHRFDIGHLMDQFNVARLMEFPVETLAEGLMLKFKPLNLDVLPLYIVLMAAFVPIL WLMLRHRNWALAGSLLLYLAARAFHWNLPSYPSGGWFFNPFTWQLLFVLGAWFAAGGARDVRAIVTARTALVVSVGFVLF ALVATLATLIPAMDVPIVSQLTQAFRPNDKTNLAPYRVLHLMALALLAVRFIPIDWPGLRWPIFRPLITCGQQSLEVFCV GVFLAFIAHFVLETTSQSFFAQLLVGAAGLSVMTGVAYYRSWSKQIDKAPITTAKRPPATQSSQLPPQEVAADQTTSNEM RGNAS
Specific function: Unknown
COG id: COG4645
COG function: function code S; Uncharacterized protein conserved in bacteria
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 45371; Mature: 45240
Theoretical pI: Translated: 10.19; Mature: 10.19
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 3.0 %Met (Translated Protein) 3.4 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 2.7 %Met (Mature Protein) 3.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPLFGPPPARDLRLDLFRGLANWAIFFGHIPGTALAWLTSRNYGFSDGADLFVFISGYTT CCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHCCCCCCCCCCCEEEEECHHHH ALVFGRMMAQRGFLIGATRLLKRVWQLYVAYVLLFIFYLTSVHYLAHRFDIGHLMDQFNV HHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH ARLMEFPVETLAEGLMLKFKPLNLDVLPLYIVLMAAFVPILWLMLRHRNWALAGSLLLYL HHHHHCCHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH AARAFHWNLPSYPSGGWFFNPFTWQLLFVLGAWFAAGGARDVRAIVTARTALVVSVGFVL HHHHHCCCCCCCCCCCCEECHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH FALVATLATLIPAMDVPIVSQLTQAFRPNDKTNLAPYRVLHLMALALLAVRFIPIDWPGL HHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCC RWPIFRPLITCGQQSLEVFCVGVFLAFIAHFVLETTSQSFFAQLLVGAAGLSVMTGVAYY CCHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH RSWSKQIDKAPITTAKRPPATQSSQLPPQEVAADQTTSNEMRGNAS HHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCCCCCC >Mature Secondary Structure PLFGPPPARDLRLDLFRGLANWAIFFGHIPGTALAWLTSRNYGFSDGADLFVFISGYTT CCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHCCCCCCCCCCCEEEEECHHHH ALVFGRMMAQRGFLIGATRLLKRVWQLYVAYVLLFIFYLTSVHYLAHRFDIGHLMDQFNV HHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH ARLMEFPVETLAEGLMLKFKPLNLDVLPLYIVLMAAFVPILWLMLRHRNWALAGSLLLYL HHHHHCCHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH AARAFHWNLPSYPSGGWFFNPFTWQLLFVLGAWFAAGGARDVRAIVTARTALVVSVGFVL HHHHHCCCCCCCCCCCCEECHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH FALVATLATLIPAMDVPIVSQLTQAFRPNDKTNLAPYRVLHLMALALLAVRFIPIDWPGL HHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCC RWPIFRPLITCGQQSLEVFCVGVFLAFIAHFVLETTSQSFFAQLLVGAAGLSVMTGVAYY CCHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH RSWSKQIDKAPITTAKRPPATQSSQLPPQEVAADQTTSNEMRGNAS HHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA