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The map label for this gene is ydeE [H]

Identifier: 192289374

GI number: 192289374

Start: 1005745

End: 1006605

Strand: Reverse

Name: ydeE [H]

Synonym: Rpal_0946

Alternate gene names: 192289374

Gene position: 1006605-1005745 (Counterclockwise)

Preceding gene: 192289375

Following gene: 192289367

Centisome position: 17.52

GC content: 63.88

Gene sequence:

>861_bases
ATGACACGAACGAACTACCAGGACCGACTTGACCGAGTGACGTCGTACATTCACGACAATCTCGATGGCGAGCTCGACTT
CGACAGGATCGCTGAAGTCGCGTCGCTGTCGCCATATCACTGGCATCGAATCTATCACGCCTGCCGAGGTGAAACCGCGG
TCGCCACCACACGCCGTCTGCGGCTGCAGCGCGCCTCCGTCAGTCTGGCGCAGACCGATGACCCGATCGCGCAGATCGCG
ACCAAAGCAGGATATGCCAGCCCGGCGGCGTTCACGCGCGCCTTTGCGGACGCCTATGGGTTGCCGCCGGCGACCTATCG
CGAGCGGGGTAGCCATGCCGATTTCCGGCCGGGGCAACTCGCCACTCAGCAAGGTGGCTGGTCGATCGAAATCCAACGAT
TCGATGCCATTCCCGCGTTCGCCATCCGCCACGACGGTCCGTATATCGAGATCGGCAAGGCCTTCGGAATGCTGTTCGGT
CAACTCGCCGCTCGCGGCGCCCTGCCGGAGCGGATCGAAATGATCGCGGTGTATCTCGACGATCCGACGGCCGTGCCGCT
GGAGCGGTTGCGCTCGTTCGCAGCGCTTGCAGCGCCGGGCGGCAAAGACCTCGATCCGCCGGTCGAGCGCATCGAGATCG
CCGGGGGCGACTATGCGGTGCTTCGGCACAAGGGCCCCTATGCCGATATGTCGGCCGCTTATAACTGGCTGTTCGGCACC
TGGCTTCCGCAATCCGACCGCGAAGCTGACGACCGCCCGGTCGTCGAGAAGTATCTCAACAGCCCGCAGGACACCAAGCC
CTCGGACCTCCTCACAGACCTCTGCCTGCCGCTGCGCTCGATCGCTCCATCTCCAGATTGA

Upstream 100 bases:

>100_bases
CCGCGCCTAATGACTGAGGTCGGTCGAAAGTCCGCAGGATTTATCAACCCGCTGCATGTCACTCCGCGACAGCAACTGTC
GCGCGCGAGGACCGATGATC

Downstream 100 bases:

>100_bases
AAGCGGATTGGCGCTTTCTCCCGAGGGGCCCAGTGTCGTCATCCACACATCTCGGTGTGAAAACCACGAAACTAGGCTCA
TTACCTCGAGGACGAAGGCC

Product: AraC family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 286; Mature: 285

Protein sequence:

>286_residues
MTRTNYQDRLDRVTSYIHDNLDGELDFDRIAEVASLSPYHWHRIYHACRGETAVATTRRLRLQRASVSLAQTDDPIAQIA
TKAGYASPAAFTRAFADAYGLPPATYRERGSHADFRPGQLATQQGGWSIEIQRFDAIPAFAIRHDGPYIEIGKAFGMLFG
QLAARGALPERIEMIAVYLDDPTAVPLERLRSFAALAAPGGKDLDPPVERIEIAGGDYAVLRHKGPYADMSAAYNWLFGT
WLPQSDREADDRPVVEKYLNSPQDTKPSDLLTDLCLPLRSIAPSPD

Sequences:

>Translated_286_residues
MTRTNYQDRLDRVTSYIHDNLDGELDFDRIAEVASLSPYHWHRIYHACRGETAVATTRRLRLQRASVSLAQTDDPIAQIA
TKAGYASPAAFTRAFADAYGLPPATYRERGSHADFRPGQLATQQGGWSIEIQRFDAIPAFAIRHDGPYIEIGKAFGMLFG
QLAARGALPERIEMIAVYLDDPTAVPLERLRSFAALAAPGGKDLDPPVERIEIAGGDYAVLRHKGPYADMSAAYNWLFGT
WLPQSDREADDRPVVEKYLNSPQDTKPSDLLTDLCLPLRSIAPSPD
>Mature_285_residues
TRTNYQDRLDRVTSYIHDNLDGELDFDRIAEVASLSPYHWHRIYHACRGETAVATTRRLRLQRASVSLAQTDDPIAQIAT
KAGYASPAAFTRAFADAYGLPPATYRERGSHADFRPGQLATQQGGWSIEIQRFDAIPAFAIRHDGPYIEIGKAFGMLFGQ
LAARGALPERIEMIAVYLDDPTAVPLERLRSFAALAAPGGKDLDPPVERIEIAGGDYAVLRHKGPYADMSAAYNWLFGTW
LPQSDREADDRPVVEKYLNSPQDTKPSDLLTDLCLPLRSIAPSPD

Specific function: May Be A Transcriptional Activator Of Genes Involved In The Multiple Antibiotic Resistance (Mar) Phenotype. It Can Also Activate Genes Such As Soda, Zwf And Micf. [C]

COG id: COG3449

COG function: function code L; DNA gyrase inhibitor

Gene ontology:

Cell location: Cytoplasmic [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010499
- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR018062
- InterPro:   IPR020449
- InterPro:   IPR018060
- InterPro:   IPR011256 [H]

Pfam domain/function: PF06445 AraC_E_bind; PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 31702; Mature: 31571

Theoretical pI: Translated: 5.63; Mature: 5.63

Prosite motif: PS00041 HTH_ARAC_FAMILY_1 ; PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTRTNYQDRLDRVTSYIHDNLDGELDFDRIAEVASLSPYHWHRIYHACRGETAVATTRRL
CCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCHHHHHHHHHHCCCHHHHHHHHH
RLQRASVSLAQTDDPIAQIATKAGYASPAAFTRAFADAYGLPPATYRERGSHADFRPGQL
HHHHHHHHHHCCCCHHHHHHHHCCCCCHHHHHHHHHHHHCCCCHHHHHCCCCCCCCCCCC
ATQQGGWSIEIQRFDAIPAFAIRHDGPYIEIGKAFGMLFGQLAARGALPERIEMIAVYLD
CCCCCCEEEEEEEECCCCEEEEECCCCEEEHHHHHHHHHHHHHHCCCCHHHEEEEEEEEC
DPTAVPLERLRSFAALAAPGGKDLDPPVERIEIAGGDYAVLRHKGPYADMSAAYNWLFGT
CCCCHHHHHHHHHHHHCCCCCCCCCCHHHHEEECCCCEEEEECCCCCHHHHHHHHHHHHC
WLPQSDREADDRPVVEKYLNSPQDTKPSDLLTDLCLPLRSIAPSPD
CCCCCCCCCCCCHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCC
>Mature Secondary Structure 
TRTNYQDRLDRVTSYIHDNLDGELDFDRIAEVASLSPYHWHRIYHACRGETAVATTRRL
CCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCHHHHHHHHHHCCCHHHHHHHHH
RLQRASVSLAQTDDPIAQIATKAGYASPAAFTRAFADAYGLPPATYRERGSHADFRPGQL
HHHHHHHHHHCCCCHHHHHHHHCCCCCHHHHHHHHHHHHCCCCHHHHHCCCCCCCCCCCC
ATQQGGWSIEIQRFDAIPAFAIRHDGPYIEIGKAFGMLFGQLAARGALPERIEMIAVYLD
CCCCCCEEEEEEEECCCCEEEEECCCCEEEHHHHHHHHHHHHHHCCCCHHHEEEEEEEEC
DPTAVPLERLRSFAALAAPGGKDLDPPVERIEIAGGDYAVLRHKGPYADMSAAYNWLFGT
CCCCHHHHHHHHHHHHCCCCCCCCCCHHHHEEECCCCEEEEECCCCCHHHHHHHHHHHHC
WLPQSDREADDRPVVEKYLNSPQDTKPSDLLTDLCLPLRSIAPSPD
CCCCCCCCCCCCHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]