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The map label for this gene is kdsD [H]

Identifier: 192289375

GI number: 192289375

Start: 1006955

End: 1007968

Strand: Reverse

Name: kdsD [H]

Synonym: Rpal_0947

Alternate gene names: 192289375

Gene position: 1007968-1006955 (Counterclockwise)

Preceding gene: 192289378

Following gene: 192289374

Centisome position: 17.55

GC content: 65.68

Gene sequence:

>1014_bases
ATGGCACTGTCCAAAAACCACACCAAGATACCTACAATGAGCGAGCAAGCCGCCGCCGCGATCCCCTCGGCCCTGCGTAC
CCTGGAGGCTGAAGCCAGCGGCGTGACCGCGCTCGCCACCGCGCTGCAATCCGATCTCGGCGTGCGCTTCGCCGCCACCA
TCGACCTGATTCAGAACGCCAAGGGCCGCCTGATCATCACCGGCCTCGGAAAGTCCGGCCACATCGGCCGCAAGATCGCC
GCGACCTTCGCCTCGACCGGCACGCCGGCATTCTTCGTGCACGCCTCCGAGGCGAGCCACGGCGATCTCGGCATGATCAC
CGCCGACGACATCATCCTGGCGATGTCGTGGTCCGGCGAGCAGCCGGAGATGAAGAACCTGATCAACTACGCCAAGCGCT
TCAAGATCGCGCTGGTGGCGATGACCTCGGACCCGACCTCGACGCTGGCGACCGCCGCCGACGTGTCGCTGACGCTGCCG
AAGGCGCGCGAAGCCTGCCCGCACAATCTGGCGCCGACCACCTCGTCGTTGATGATGCTGGCGCTCGGCGATGCGCTCGC
GATCGCGCTGCTCGAAAGCCGCGGCTTCACTCCGGGCGATTTCAGCGTGCTGCACCCCGGCGGCAAGCTCGGCGCGATGC
TGAAATACGCGCGTGACCTGATGCACACCGGCGAAGCGATTCCGCTGAAGCCGCTCGGCACCCGGATGTCGGATGCGCTG
GTCGAAATGTCCGCCAAGGGTTTCGGCTGCGTCGGAATCATCGACAGCAACGGTCAGATCGCAGGCATCGTCACCGACGG
CGACCTCCGCCGGAATATGCGGTCCGACCTGATGACTGCCACCGTCGACGAGGTGATGACGCGGAATCCGAAGACCATTA
GCCCGAACCTGCTCGCCGGCCAGGCGCTGGAACTGCTGAACTCCTCGAAGATCACCGCGCTGCTGGTCGCAGAAGGCAAG
AAGCCGCTCGGCATCGTGCATCTGCACGACCTGCTGCGGGCCGGGGTGGCGTAA

Upstream 100 bases:

>100_bases
TTGAGAACGACGACGGGCCGCGACGGGCTGCGTCGCATCCGGGCCGGCGCCATGCTAGGAGAAGGCCCGGCCGCTTCGCG
GCCCATGCCGGAGCCCCTGC

Downstream 100 bases:

>100_bases
GCGCCACTTCGCCCTAAACCTGGGCACCTCTCCGAAAACTCGACCGAACAAAAGGACGGTCGCAGGCTCTTCCCCGCGCC
ATGCCTGGGTTCGATACCCA

Product: KpsF/GutQ family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 337; Mature: 336

Protein sequence:

>337_residues
MALSKNHTKIPTMSEQAAAAIPSALRTLEAEASGVTALATALQSDLGVRFAATIDLIQNAKGRLIITGLGKSGHIGRKIA
ATFASTGTPAFFVHASEASHGDLGMITADDIILAMSWSGEQPEMKNLINYAKRFKIALVAMTSDPTSTLATAADVSLTLP
KAREACPHNLAPTTSSLMMLALGDALAIALLESRGFTPGDFSVLHPGGKLGAMLKYARDLMHTGEAIPLKPLGTRMSDAL
VEMSAKGFGCVGIIDSNGQIAGIVTDGDLRRNMRSDLMTATVDEVMTRNPKTISPNLLAGQALELLNSSKITALLVAEGK
KPLGIVHLHDLLRAGVA

Sequences:

>Translated_337_residues
MALSKNHTKIPTMSEQAAAAIPSALRTLEAEASGVTALATALQSDLGVRFAATIDLIQNAKGRLIITGLGKSGHIGRKIA
ATFASTGTPAFFVHASEASHGDLGMITADDIILAMSWSGEQPEMKNLINYAKRFKIALVAMTSDPTSTLATAADVSLTLP
KAREACPHNLAPTTSSLMMLALGDALAIALLESRGFTPGDFSVLHPGGKLGAMLKYARDLMHTGEAIPLKPLGTRMSDAL
VEMSAKGFGCVGIIDSNGQIAGIVTDGDLRRNMRSDLMTATVDEVMTRNPKTISPNLLAGQALELLNSSKITALLVAEGK
KPLGIVHLHDLLRAGVA
>Mature_336_residues
ALSKNHTKIPTMSEQAAAAIPSALRTLEAEASGVTALATALQSDLGVRFAATIDLIQNAKGRLIITGLGKSGHIGRKIAA
TFASTGTPAFFVHASEASHGDLGMITADDIILAMSWSGEQPEMKNLINYAKRFKIALVAMTSDPTSTLATAADVSLTLPK
AREACPHNLAPTTSSLMMLALGDALAIALLESRGFTPGDFSVLHPGGKLGAMLKYARDLMHTGEAIPLKPLGTRMSDALV
EMSAKGFGCVGIIDSNGQIAGIVTDGDLRRNMRSDLMTATVDEVMTRNPKTISPNLLAGQALELLNSSKITALLVAEGKK
PLGIVHLHDLLRAGVA

Specific function: Catalyzes the interconversion of D-arabinose 5-phosphate and D-ribulose 5-phosphate [H]

COG id: COG0794

COG function: function code M; Predicted sugar phosphate isomerase involved in capsule formation

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 SIS domain [H]

Homologues:

Organism=Escherichia coli, GI1789588, Length=280, Percent_Identity=50.7142857142857, Blast_Score=277, Evalue=7e-76,
Organism=Escherichia coli, GI87082151, Length=301, Percent_Identity=44.5182724252492, Blast_Score=234, Evalue=5e-63,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013785
- InterPro:   IPR000644
- InterPro:   IPR004800
- InterPro:   IPR001347 [H]

Pfam domain/function: PF00571 CBS; PF01380 SIS [H]

EC number: =5.3.1.13 [H]

Molecular weight: Translated: 35200; Mature: 35069

Theoretical pI: Translated: 8.28; Mature: 8.28

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
4.5 %Met     (Translated Protein)
5.0 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
4.2 %Met     (Mature Protein)
4.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MALSKNHTKIPTMSEQAAAAIPSALRTLEAEASGVTALATALQSDLGVRFAATIDLIQNA
CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCEEHHHHHHHHHCC
KGRLIITGLGKSGHIGRKIAATFASTGTPAFFVHASEASHGDLGMITADDIILAMSWSGE
CCCEEEEECCCCCCCCHHHHHHHHCCCCCEEEEEECCCCCCCEEEEEECCEEEEEECCCC
QPEMKNLINYAKRFKIALVAMTSDPTSTLATAADVSLTLPKAREACPHNLAPTTSSLMML
CCHHHHHHHHHHHEEEEEEEEECCCCHHHHHHCCCEEECCHHHHCCCCCCCCCHHHHHHH
ALGDALAIALLESRGFTPGDFSVLHPGGKLGAMLKYARDLMHTGEAIPLKPLGTRMSDAL
HHHHHHHHHHHHHCCCCCCCCEEECCCHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHH
VEMSAKGFGCVGIIDSNGQIAGIVTDGDLRRNMRSDLMTATVDEVMTRNPKTISPNLLAG
HHHHCCCCEEEEEEECCCEEEEEEECHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHH
QALELLNSSKITALLVAEGKKPLGIVHLHDLLRAGVA
HHHHHHCCCCEEEEEEECCCCCEEEHHHHHHHHHCCC
>Mature Secondary Structure 
ALSKNHTKIPTMSEQAAAAIPSALRTLEAEASGVTALATALQSDLGVRFAATIDLIQNA
CCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCEEHHHHHHHHHCC
KGRLIITGLGKSGHIGRKIAATFASTGTPAFFVHASEASHGDLGMITADDIILAMSWSGE
CCCEEEEECCCCCCCCHHHHHHHHCCCCCEEEEEECCCCCCCEEEEEECCEEEEEECCCC
QPEMKNLINYAKRFKIALVAMTSDPTSTLATAADVSLTLPKAREACPHNLAPTTSSLMML
CCHHHHHHHHHHHEEEEEEEEECCCCHHHHHHCCCEEECCHHHHCCCCCCCCCHHHHHHH
ALGDALAIALLESRGFTPGDFSVLHPGGKLGAMLKYARDLMHTGEAIPLKPLGTRMSDAL
HHHHHHHHHHHHHCCCCCCCCEEECCCHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHH
VEMSAKGFGCVGIIDSNGQIAGIVTDGDLRRNMRSDLMTATVDEVMTRNPKTISPNLLAG
HHHHCCCCEEEEEEECCCEEEEEEECHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHH
QALELLNSSKITALLVAEGKKPLGIVHLHDLLRAGVA
HHHHHHCCCCEEEEEEECCCCCEEEHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11586360; 12142430 [H]