| Definition | Rhodopseudomonas palustris TIE-1 chromosome, complete genome. |
|---|---|
| Accession | NC_011004 |
| Length | 5,744,041 |
Click here to switch to the map view.
The map label for this gene is 192289291
Identifier: 192289291
GI number: 192289291
Start: 916107
End: 916739
Strand: Reverse
Name: 192289291
Synonym: Rpal_0863
Alternate gene names: NA
Gene position: 916739-916107 (Counterclockwise)
Preceding gene: 192289294
Following gene: 192289290
Centisome position: 15.96
GC content: 63.67
Gene sequence:
>633_bases ATGCAAATGCTGACGCATGATCAGATCTGGACTGCGCTCGACCGGCTGGCCGAACGGGCCGGCCTCTCCCCGTCAGGACT CGCCAAGAAATCCGGCCTCGACCCCACCACCTTCAACAAGTCGAAGCGGATCACCAATGACGGCCGCGAGCGCTGGCCTT CGACCGAATCAGTCGCCAAGGCGCTGCAGGCCACCAACACCGCGATCGATACGTTCGTGCAACTGATTCACGACCGGCCG CGGGTAGTGCAGTCGGTCCCGCTGCTCGGCCTCGCCCAGGCCGGCTCCGGCGGGTATTTCGACGATGGTGGCTTTCCGGT CGGCAAGGGCTGGGACGAAGTCGGGCTGCCATCGATCACCGACGAGCACGCCTACGCGCTGGAAATCTCCGGCGATTCGA TGAAGCCCGCGTATCGCAGCGGCGACATCGTGGTGGTATCGCCGAGCGCCACCGTGCATCGCGGCGACCGCGTGGTGGTC AAAACCACCAAAGGTGAAGTGATGGTGAAGGAGTTGAAGCGGCGCACCGCCAAGGTGGTCGAGCTGGCTTCTCTCAATCC CAGCCATCCCGACCGGACTCTGGCACCGTCAGAGATCGAATGGATCGGCCGAATCGTCTGGGCCAGTCAGTAA
Upstream 100 bases:
>100_bases GCCGGACGGGATTGCATAACGCCTTCAATTAAGGCAATAATTCCTAGTCGTAAGTCCGTTTCTCGCGCCGGGTCCGACGG CGCGTCCGGAGTGCCTTCCG
Downstream 100 bases:
>100_bases CCGTAAAGCGTCGTTCATTCGTCCCACTTCCCTTTGCTCCGGCGTCGGGCAATGCTAGTTCCCGCGCATCAACCCCGGAG ACGTCGATGGACCGTCGCAA
Product: phage repressor
Products: NA
Alternate protein names: Peptidase; Transcriptional Regulator; Bacteriophage Repressor; Peptidase Family S; S24 Family Peptidase; Transcriptional Regulator Protein; Phage-Related Transcriptional Regulator Protein; LexA-Like Transcriptional Repressor; Peptidase Family; Cro/CI Family Transcriptional Regulator; Transcription Regulator Protein; Repressor CI Bacteriophage Origin; Phage-Related Transcriptional Regulator; Peptidase S
Number of amino acids: Translated: 210; Mature: 210
Protein sequence:
>210_residues MQMLTHDQIWTALDRLAERAGLSPSGLAKKSGLDPTTFNKSKRITNDGRERWPSTESVAKALQATNTAIDTFVQLIHDRP RVVQSVPLLGLAQAGSGGYFDDGGFPVGKGWDEVGLPSITDEHAYALEISGDSMKPAYRSGDIVVVSPSATVHRGDRVVV KTTKGEVMVKELKRRTAKVVELASLNPSHPDRTLAPSEIEWIGRIVWASQ
Sequences:
>Translated_210_residues MQMLTHDQIWTALDRLAERAGLSPSGLAKKSGLDPTTFNKSKRITNDGRERWPSTESVAKALQATNTAIDTFVQLIHDRP RVVQSVPLLGLAQAGSGGYFDDGGFPVGKGWDEVGLPSITDEHAYALEISGDSMKPAYRSGDIVVVSPSATVHRGDRVVV KTTKGEVMVKELKRRTAKVVELASLNPSHPDRTLAPSEIEWIGRIVWASQ >Mature_210_residues MQMLTHDQIWTALDRLAERAGLSPSGLAKKSGLDPTTFNKSKRITNDGRERWPSTESVAKALQATNTAIDTFVQLIHDRP RVVQSVPLLGLAQAGSGGYFDDGGFPVGKGWDEVGLPSITDEHAYALEISGDSMKPAYRSGDIVVVSPSATVHRGDRVVV KTTKGEVMVKELKRRTAKVVELASLNPSHPDRTLAPSEIEWIGRIVWASQ
Specific function: Unknown
COG id: COG2932
COG function: function code K; Predicted transcriptional regulator
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 22842; Mature: 22842
Theoretical pI: Translated: 8.92; Mature: 8.92
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 1.9 %Met (Translated Protein) 1.9 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 1.9 %Met (Mature Protein) 1.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MQMLTHDQIWTALDRLAERAGLSPSGLAKKSGLDPTTFNKSKRITNDGRERWPSTESVAK CCCCCHHHHHHHHHHHHHHHCCCCCCCHHHCCCCCCCCCCCCCCCCCHHHHCCCHHHHHH ALQATNTAIDTFVQLIHDRPRVVQSVPLLGLAQAGSGGYFDDGGFPVGKGWDEVGLPSIT HHHHHHHHHHHHHHHHHCCHHHHHHCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCC DEHAYALEISGDSMKPAYRSGDIVVVSPSATVHRGDRVVVKTTKGEVMVKELKRRTAKVV CCCEEEEEECCCCCCCCCCCCCEEEECCCCEEECCCEEEEEECCCHHHHHHHHHHHHHHH ELASLNPSHPDRTLAPSEIEWIGRIVWASQ HHHCCCCCCCCCCCCCHHHHHHHHHHHCCC >Mature Secondary Structure MQMLTHDQIWTALDRLAERAGLSPSGLAKKSGLDPTTFNKSKRITNDGRERWPSTESVAK CCCCCHHHHHHHHHHHHHHHCCCCCCCHHHCCCCCCCCCCCCCCCCCHHHHCCCHHHHHH ALQATNTAIDTFVQLIHDRPRVVQSVPLLGLAQAGSGGYFDDGGFPVGKGWDEVGLPSIT HHHHHHHHHHHHHHHHHCCHHHHHHCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCC DEHAYALEISGDSMKPAYRSGDIVVVSPSATVHRGDRVVVKTTKGEVMVKELKRRTAKVV CCCEEEEEECCCCCCCCCCCCCEEEECCCCEEECCCEEEEEECCCHHHHHHHHHHHHHHH ELASLNPSHPDRTLAPSEIEWIGRIVWASQ HHHCCCCCCCCCCCCCHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA