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The map label for this gene is rnz [H]

Identifier: 192289294

GI number: 192289294

Start: 918642

End: 919376

Strand: Reverse

Name: rnz [H]

Synonym: Rpal_0866

Alternate gene names: 192289294

Gene position: 919376-918642 (Counterclockwise)

Preceding gene: 192289295

Following gene: 192289291

Centisome position: 16.01

GC content: 63.27

Gene sequence:

>735_bases
ATGCAGGTACGATTTGTCGGCTGTGGCGACGCGATCGGCTCCGGTGGCCGGCTCAATACGTGCTTTCACGTCTCGGGGCA
GAGCGTCAATTTCCTGATCGACTGCGGTGCGACGTCGCTGCCGGCGCTGAGGCGTTACGGCATCCTGCGCGAAGACCTCG
ACCTGATCCTGATCACGCATTTCCACGCCGATCATTTCGGCGGGCTGCCGTTCATGATGCTCGATGCGCAGTTCATGAAG
CGAAAGCGGCCGCTGGTGATCGCCGGCCCGCTCGGCATCGACATCCGCCTGACGCGGCTGATGGAAGCGATGTTCGAGTA
TTCCTCGGCCACCAAACCGAACTTCGACCTGCAGGTGCTGGCGCTGGAGCCCGCGGTGACGCGGCAGTTCGGCGCGGTGA
CGGTGACGCCCTTTCCGGTGGTGCACGGCGATTCCGGCGGGCCGTTCTTCGCCTATCGGATCGAGGCGGAAGGCCGCATC
CTCGCTTACAGCGGCGATACGCAATGGACCGATCAACTCGTCGCCGCCGCGCACGACGCCGATCTGTTCATCTGCGAGGC
CTACACCTACGAACGTACGGTGAAGAACCACATCAGCCTGAAGGCACTGGAAACGCATCTGCCGGAGATCAATCCGAAGC
GCGTGATCCTCACCCACATGGGCGACGAGGTGCTGCACAAGCTCGACACCGTCCCGCACATGGCCGCGAGCGACGGACTG
ATCGTACCGCTGTAG

Upstream 100 bases:

>100_bases
CGCAACGGTCGCGGCATCCGGCGATGGTACGGGTTACGTTCCGAGCACAGACGGCCTAGATCAGGGCGACGGCATCTGAG
CCAGTTCGGCGGAACCCGAA

Downstream 100 bases:

>100_bases
CTAACTACAAGGCATCATTCCGGGGCGCGCGCAGCGCGAACCCGGAATCTCATGTGCCCAAGTAACTACTGGATTCCGGG
TTCGCTCGCTTTGCGAGCGC

Product: beta-lactamase domain-containing protein

Products: NA

Alternate protein names: RNase Z; tRNA 3 endonuclease; tRNase Z [H]

Number of amino acids: Translated: 244; Mature: 244

Protein sequence:

>244_residues
MQVRFVGCGDAIGSGGRLNTCFHVSGQSVNFLIDCGATSLPALRRYGILREDLDLILITHFHADHFGGLPFMMLDAQFMK
RKRPLVIAGPLGIDIRLTRLMEAMFEYSSATKPNFDLQVLALEPAVTRQFGAVTVTPFPVVHGDSGGPFFAYRIEAEGRI
LAYSGDTQWTDQLVAAAHDADLFICEAYTYERTVKNHISLKALETHLPEINPKRVILTHMGDEVLHKLDTVPHMAASDGL
IVPL

Sequences:

>Translated_244_residues
MQVRFVGCGDAIGSGGRLNTCFHVSGQSVNFLIDCGATSLPALRRYGILREDLDLILITHFHADHFGGLPFMMLDAQFMK
RKRPLVIAGPLGIDIRLTRLMEAMFEYSSATKPNFDLQVLALEPAVTRQFGAVTVTPFPVVHGDSGGPFFAYRIEAEGRI
LAYSGDTQWTDQLVAAAHDADLFICEAYTYERTVKNHISLKALETHLPEINPKRVILTHMGDEVLHKLDTVPHMAASDGL
IVPL
>Mature_244_residues
MQVRFVGCGDAIGSGGRLNTCFHVSGQSVNFLIDCGATSLPALRRYGILREDLDLILITHFHADHFGGLPFMMLDAQFMK
RKRPLVIAGPLGIDIRLTRLMEAMFEYSSATKPNFDLQVLALEPAVTRQFGAVTVTPFPVVHGDSGGPFFAYRIEAEGRI
LAYSGDTQWTDQLVAAAHDADLFICEAYTYERTVKNHISLKALETHLPEINPKRVILTHMGDEVLHKLDTVPHMAASDGL
IVPL

Specific function: Zinc phosphodiesterase, which displays some tRNA 3'- processing endonuclease activity. Probably involved in tRNA maturation, by removing a 3'-trailer from precursor tRNA [H]

COG id: COG1234

COG function: function code R; Metal-dependent hydrolases of the beta-lactamase superfamily III

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RNase Z family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001279
- InterPro:   IPR013471 [H]

Pfam domain/function: PF00753 Lactamase_B [H]

EC number: =3.1.26.11 [H]

Molecular weight: Translated: 26934; Mature: 26934

Theoretical pI: Translated: 6.43; Mature: 6.43

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
4.9 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
4.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQVRFVGCGDAIGSGGRLNTCFHVSGQSVNFLIDCGATSLPALRRYGILREDLDLILITH
CEEEEEECCCCCCCCCCEEEEEEECCCCEEEEEECCCCCCHHHHHHCCHHCCCCEEEEEE
FHADHFGGLPFMMLDAQFMKRKRPLVIAGPLGIDIRLTRLMEAMFEYSSATKPNFDLQVL
ECCCCCCCCCCEEECHHHHHCCCCEEEECCCCCCEEHHHHHHHHHHHCCCCCCCCCEEEE
ALEPAVTRQFGAVTVTPFPVVHGDSGGPFFAYRIEAEGRILAYSGDTQWTDQLVAAAHDA
EECCHHHHCCCEEEECCEEEEECCCCCCEEEEEEECCCEEEEEECCCCHHHHHHHHCCCC
DLFICEAYTYERTVKNHISLKALETHLPEINPKRVILTHMGDEVLHKLDTVPHMAASDGL
CEEEEEEEHHHHHHHHHEEEEEHHHHCCCCCCCEEEEEECCHHHHHHHHCCCCCCCCCCE
IVPL
EEEC
>Mature Secondary Structure
MQVRFVGCGDAIGSGGRLNTCFHVSGQSVNFLIDCGATSLPALRRYGILREDLDLILITH
CEEEEEECCCCCCCCCCEEEEEEECCCCEEEEEECCCCCCHHHHHHCCHHCCCCEEEEEE
FHADHFGGLPFMMLDAQFMKRKRPLVIAGPLGIDIRLTRLMEAMFEYSSATKPNFDLQVL
ECCCCCCCCCCEEECHHHHHCCCCEEEECCCCCCEEHHHHHHHHHHHCCCCCCCCCEEEE
ALEPAVTRQFGAVTVTPFPVVHGDSGGPFFAYRIEAEGRILAYSGDTQWTDQLVAAAHDA
EECCHHHHCCCEEEECCEEEEECCCCCCEEEEEEECCCEEEEEECCCCHHHHHHHHCCCC
DLFICEAYTYERTVKNHISLKALETHLPEINPKRVILTHMGDEVLHKLDTVPHMAASDGL
CEEEEEEEHHHHHHHHHEEEEEHHHHCCCCCCCEEEEEECCHHHHHHHHCCCCCCCCCCE
IVPL
EEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA