| Definition | Rhodopseudomonas palustris TIE-1 chromosome, complete genome. |
|---|---|
| Accession | NC_011004 |
| Length | 5,744,041 |
Click here to switch to the map view.
The map label for this gene is phnJ [H]
Identifier: 192289188
GI number: 192289188
Start: 801157
End: 802035
Strand: Reverse
Name: phnJ [H]
Synonym: Rpal_0759
Alternate gene names: 192289188
Gene position: 802035-801157 (Counterclockwise)
Preceding gene: 192289189
Following gene: 192289187
Centisome position: 13.96
GC content: 64.05
Gene sequence:
>879_bases ATGACCGAGGCGACCTACAATTTCGCTTATCTCGACGAGCAGACCAAGCGGATGATCCGCCGCGCGATCCTGAAAGGAAT CGCGATCCCCGGCTATCAGGTGCCGTTCGCCAGCCGCGAGATGCCGATGCCTTATGGCTGGGGCACCGGCGGTGTACAGG TGACGGCGTCGATCCTCGGTCCCGACGATACGCTGAAGGTGATCGACCAGGGCAGCGACGACACCACCAACGCGATCTCG ATCCGCAAGTTCTTCGCCAAGACCGCCTGCGTGGCCACCACCACGGCGACGCCGGACGCGAGCGTGATCCAGACCCGGCA CCGCATTCCCGAAACGCCGCTGCACGAAGGCCAGGTGCTGGTGTATCAGGTGCCGATCCCCGAACCGCTGCGCTATCTCG AACCGCGCGAGACCGAGACGCGGCGCATGCATGCGCTCGCTGAATACGGCCTGATGCACGTCAAGCTGTACGAGGACATC GCCAAGTTCGGCCACATCGCCACCGCCTATGCCTATCCGGTGAAGGTCGCGGGCCGCTACGTGATGGACCCGTCACCGAC GCCGAAGTTCGACAACCCGAAGATGGACAACTGCCCGGCGCTGCAACTGTTCGGCGCCGGCCGCGAGAAGCGGATCTACG CGATCCCGCCTTACACGCAGGTGGTGTCGCTGGATTTCGAGGACTATCCGTTCACGCGCTATCGCCAGGACGGCTGCTGT GCGCTGTGCGGTGCCGACGACTCGTATCTCGACGAGATCGTCACCGATAACGCCGGCACCCGGATGTTCGTGTGCTCGGA CACAGATTATTGCGAAGGCCGCCGCGCCCAGGGTCACACCGGCAGCGAAACGGCCCCGATGGAGAGCACCCATGCTTGA
Upstream 100 bases:
>100_bases AGCTGCCGCACTACGTCGATTTCCAGTCCGAGCTCGGCCTGCTGCGCAAGCTGCGCGCCGAATTCAACCAGGACCAACCC GAGCTGCGCGAGGCTGCGGA
Downstream 100 bases:
>100_bases TCGCGTCTCATCCGCCGCATCAGGCGCCTTCACCGCGGCCGACCAGCCGCTGCTGATCGCCGACGGCCTGTCGAAACGCT ACGGCCGGATCGACGCCTGT
Product: phosphonate metabolism PhnJ
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 292; Mature: 291
Protein sequence:
>292_residues MTEATYNFAYLDEQTKRMIRRAILKGIAIPGYQVPFASREMPMPYGWGTGGVQVTASILGPDDTLKVIDQGSDDTTNAIS IRKFFAKTACVATTTATPDASVIQTRHRIPETPLHEGQVLVYQVPIPEPLRYLEPRETETRRMHALAEYGLMHVKLYEDI AKFGHIATAYAYPVKVAGRYVMDPSPTPKFDNPKMDNCPALQLFGAGREKRIYAIPPYTQVVSLDFEDYPFTRYRQDGCC ALCGADDSYLDEIVTDNAGTRMFVCSDTDYCEGRRAQGHTGSETAPMESTHA
Sequences:
>Translated_292_residues MTEATYNFAYLDEQTKRMIRRAILKGIAIPGYQVPFASREMPMPYGWGTGGVQVTASILGPDDTLKVIDQGSDDTTNAIS IRKFFAKTACVATTTATPDASVIQTRHRIPETPLHEGQVLVYQVPIPEPLRYLEPRETETRRMHALAEYGLMHVKLYEDI AKFGHIATAYAYPVKVAGRYVMDPSPTPKFDNPKMDNCPALQLFGAGREKRIYAIPPYTQVVSLDFEDYPFTRYRQDGCC ALCGADDSYLDEIVTDNAGTRMFVCSDTDYCEGRRAQGHTGSETAPMESTHA >Mature_291_residues TEATYNFAYLDEQTKRMIRRAILKGIAIPGYQVPFASREMPMPYGWGTGGVQVTASILGPDDTLKVIDQGSDDTTNAISI RKFFAKTACVATTTATPDASVIQTRHRIPETPLHEGQVLVYQVPIPEPLRYLEPRETETRRMHALAEYGLMHVKLYEDIA KFGHIATAYAYPVKVAGRYVMDPSPTPKFDNPKMDNCPALQLFGAGREKRIYAIPPYTQVVSLDFEDYPFTRYRQDGCCA LCGADDSYLDEIVTDNAGTRMFVCSDTDYCEGRRAQGHTGSETAPMESTHA
Specific function: Belongs to an operon involved in utilization of glyphosate and other phosphonates [H]
COG id: COG3627
COG function: function code P; Uncharacterized enzyme of phosphonate metabolism
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the phnJ family [H]
Homologues:
Organism=Escherichia coli, GI1790536, Length=266, Percent_Identity=76.6917293233083, Blast_Score=444, Evalue=1e-126,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR010306 [H]
Pfam domain/function: PF06007 PhnJ [H]
EC number: NA
Molecular weight: Translated: 32560; Mature: 32429
Theoretical pI: Translated: 5.63; Mature: 5.63
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.4 %Cys (Translated Protein) 3.4 %Met (Translated Protein) 5.8 %Cys+Met (Translated Protein) 2.4 %Cys (Mature Protein) 3.1 %Met (Mature Protein) 5.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTEATYNFAYLDEQTKRMIRRAILKGIAIPGYQVPFASREMPMPYGWGTGGVQVTASILG CCCCEEEEEECCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEC PDDTLKVIDQGSDDTTNAISIRKFFAKTACVATTTATPDASVIQTRHRIPETPLHEGQVL CCCHHHEEECCCCCCCHHHHHHHHHHHHHHEEEECCCCCHHHHHHHHCCCCCCCCCCEEE VYQVPIPEPLRYLEPRETETRRMHALAEYGLMHVKLYEDIAKFGHIATAYAYPVKVAGRY EEECCCCCHHHHCCCCCHHHHHHHHHHHHCEEEEHHHHHHHHHCCHHHHHCCEEEECCEE VMDPSPTPKFDNPKMDNCPALQLFGAGREKRIYAIPPYTQVVSLDFEDYPFTRYRQDGCC EECCCCCCCCCCCCCCCCCEEEEECCCCCCEEEECCCCEEEEEECCCCCCCHHCCCCCCE ALCGADDSYLDEIVTDNAGTRMFVCSDTDYCEGRRAQGHTGSETAPMESTHA EEECCCHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCC >Mature Secondary Structure TEATYNFAYLDEQTKRMIRRAILKGIAIPGYQVPFASREMPMPYGWGTGGVQVTASILG CCCEEEEEECCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEC PDDTLKVIDQGSDDTTNAISIRKFFAKTACVATTTATPDASVIQTRHRIPETPLHEGQVL CCCHHHEEECCCCCCCHHHHHHHHHHHHHHEEEECCCCCHHHHHHHHCCCCCCCCCCEEE VYQVPIPEPLRYLEPRETETRRMHALAEYGLMHVKLYEDIAKFGHIATAYAYPVKVAGRY EEECCCCCHHHHCCCCCHHHHHHHHHHHHCEEEEHHHHHHHHHCCHHHHHCCEEEECCEE VMDPSPTPKFDNPKMDNCPALQLFGAGREKRIYAIPPYTQVVSLDFEDYPFTRYRQDGCC EECCCCCCCCCCCCCCCCCEEEEECCCCCCEEEECCCCEEEEEECCCCCCCHHCCCCCCE ALCGADDSYLDEIVTDNAGTRMFVCSDTDYCEGRRAQGHTGSETAPMESTHA EEECCCHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 11481431 [H]