| Definition | Rhodopseudomonas palustris TIE-1 chromosome, complete genome. |
|---|---|
| Accession | NC_011004 |
| Length | 5,744,041 |
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The map label for this gene is phnK [H]
Identifier: 192289187
GI number: 192289187
Start: 800346
End: 801164
Strand: Reverse
Name: phnK [H]
Synonym: Rpal_0758
Alternate gene names: 192289187
Gene position: 801164-800346 (Counterclockwise)
Preceding gene: 192289188
Following gene: 192289186
Centisome position: 13.95
GC content: 67.28
Gene sequence:
>819_bases ATGCTTGATCGCGTCTCATCCGCCGCATCAGGCGCCTTCACCGCGGCCGACCAGCCGCTGCTGATCGCCGACGGCCTGTC GAAACGCTACGGCCGGATCGACGCCTGTCGCGGCGTGTCGTTCGAACTCTTCCCTGGCGAAGTGCTGGCGATTGTCGGCG AGTCCGGTTCCGGCAAATCGACCCTGCTGCAGATGCTGTCGGGACAGATGACGCCGAGCGCCGGGCGCGTGTCCTATCGG ATGCGCGACGGCGTCCTGCGCGATCTTGCCGAACTCGGTGAAGCCGAGCGCCGGCTGCTGCTGCGCACCGATTGGGGCTT CGTGCATCAGGATCCCGCGCAGGGCCTGCGCATGGCGGTCTCGGCCGGCGCCAATGTCGGCGAACGGTTGATGGCGATCG GTTGGAATCACTACGGCAAGATCCGGAGCGTCGCCAGCGACTGGCTGGAGCGGGTCGAGATCGACACCGGCCGCATCGAC GACGCGCCGCGCACCTATTCGGGCGGCATGCGGCAGCGGCTGCAGATCGCCCGCAACCTCGTTACCGATCCGCGCCTCGT CTTCATGGACGAGCCGACCGGGGGGCTCGACGTCTCGGTGCAGGCGCGGCTGCTCGATCTGGTCCGCAGCCTGGTGGCCG AACTCGGGCTGGCCGCGATCGTCGTCACCCATGATCTCGCGGTGGCACGGCTGCTGTCGCATCGGATCCTGGTGATGAAA TCAGGCCGCGTAATCGAGACCGGGCTGACCGACCAGGTGCTCGACGATCCGCGCGAACCCTATACGCAACTGCTCGTCTC CTCGATCCTTCCGGCGTGA
Upstream 100 bases:
>100_bases GCCGGCACCCGGATGTTCGTGTGCTCGGACACAGATTATTGCGAAGGCCGCCGCGCCCAGGGTCACACCGGCAGCGAAAC GGCCCCGATGGAGAGCACCC
Downstream 100 bases:
>100_bases TGACCATGACCCAAGCTCCCGCTCTCGTCGTCGATAACGCCCAGAAGAGTTTCGTTATGCATCTGCAGGGTGGCGTGACG CTGCCGGTGGTGCGCGGCGT
Product: phosphonate C-P lyase system protein PhnK
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 272; Mature: 272
Protein sequence:
>272_residues MLDRVSSAASGAFTAADQPLLIADGLSKRYGRIDACRGVSFELFPGEVLAIVGESGSGKSTLLQMLSGQMTPSAGRVSYR MRDGVLRDLAELGEAERRLLLRTDWGFVHQDPAQGLRMAVSAGANVGERLMAIGWNHYGKIRSVASDWLERVEIDTGRID DAPRTYSGGMRQRLQIARNLVTDPRLVFMDEPTGGLDVSVQARLLDLVRSLVAELGLAAIVVTHDLAVARLLSHRILVMK SGRVIETGLTDQVLDDPREPYTQLLVSSILPA
Sequences:
>Translated_272_residues MLDRVSSAASGAFTAADQPLLIADGLSKRYGRIDACRGVSFELFPGEVLAIVGESGSGKSTLLQMLSGQMTPSAGRVSYR MRDGVLRDLAELGEAERRLLLRTDWGFVHQDPAQGLRMAVSAGANVGERLMAIGWNHYGKIRSVASDWLERVEIDTGRID DAPRTYSGGMRQRLQIARNLVTDPRLVFMDEPTGGLDVSVQARLLDLVRSLVAELGLAAIVVTHDLAVARLLSHRILVMK SGRVIETGLTDQVLDDPREPYTQLLVSSILPA >Mature_272_residues MLDRVSSAASGAFTAADQPLLIADGLSKRYGRIDACRGVSFELFPGEVLAIVGESGSGKSTLLQMLSGQMTPSAGRVSYR MRDGVLRDLAELGEAERRLLLRTDWGFVHQDPAQGLRMAVSAGANVGERLMAIGWNHYGKIRSVASDWLERVEIDTGRID DAPRTYSGGMRQRLQIARNLVTDPRLVFMDEPTGGLDVSVQARLLDLVRSLVAELGLAAIVVTHDLAVARLLSHRILVMK SGRVIETGLTDQVLDDPREPYTQLLVSSILPA
Specific function: Part of the binding-protein-dependent transport system for alkylphosphonates. Probably responsible for energy coupling to the transport system [H]
COG id: COG4107
COG function: function code P; ABC-type phosphonate transport system, ATPase component
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 ABC transporter domain [H]
Homologues:
Organism=Homo sapiens, GI47078218, Length=234, Percent_Identity=26.9230769230769, Blast_Score=84, Evalue=1e-16, Organism=Homo sapiens, GI45446740, Length=234, Percent_Identity=26.9230769230769, Blast_Score=84, Evalue=1e-16, Organism=Homo sapiens, GI31657092, Length=238, Percent_Identity=27.3109243697479, Blast_Score=82, Evalue=5e-16, Organism=Homo sapiens, GI27436953, Length=217, Percent_Identity=26.2672811059908, Blast_Score=80, Evalue=2e-15, Organism=Homo sapiens, GI153792144, Length=224, Percent_Identity=25, Blast_Score=77, Evalue=2e-14, Organism=Homo sapiens, GI9961250, Length=229, Percent_Identity=28.82096069869, Blast_Score=75, Evalue=6e-14, Organism=Homo sapiens, GI4505771, Length=226, Percent_Identity=29.2035398230088, Blast_Score=74, Evalue=9e-14, Organism=Homo sapiens, GI9961252, Length=226, Percent_Identity=29.2035398230088, Blast_Score=74, Evalue=1e-13, Organism=Homo sapiens, GI27477115, Length=195, Percent_Identity=26.6666666666667, Blast_Score=74, Evalue=2e-13, Organism=Homo sapiens, GI9665248, Length=225, Percent_Identity=27.5555555555556, Blast_Score=71, Evalue=1e-12, Organism=Homo sapiens, GI105990541, Length=217, Percent_Identity=27.6497695852535, Blast_Score=71, Evalue=1e-12, Organism=Homo sapiens, GI171184400, Length=242, Percent_Identity=27.6859504132231, Blast_Score=70, Evalue=2e-12, Organism=Homo sapiens, GI27262624, Length=223, Percent_Identity=26.0089686098655, Blast_Score=70, Evalue=2e-12, Organism=Homo sapiens, GI27262626, Length=223, Percent_Identity=26.0089686098655, Blast_Score=70, Evalue=2e-12, Organism=Homo sapiens, GI25914749, Length=228, Percent_Identity=31.140350877193, Blast_Score=66, Evalue=3e-11, Organism=Homo sapiens, GI42490749, Length=242, Percent_Identity=28.5123966942149, Blast_Score=65, Evalue=8e-11, Organism=Escherichia coli, GI48994997, Length=254, Percent_Identity=64.1732283464567, Blast_Score=323, Evalue=6e-90, Organism=Escherichia coli, GI1789962, Length=261, Percent_Identity=37.1647509578544, Blast_Score=156, Evalue=1e-39, Organism=Escherichia coli, GI1789963, Length=256, Percent_Identity=35.15625, Blast_Score=141, Evalue=4e-35, Organism=Escherichia coli, GI1787758, Length=249, Percent_Identity=35.7429718875502, Blast_Score=140, Evalue=1e-34, Organism=Escherichia coli, GI1787500, Length=238, Percent_Identity=34.453781512605, Blast_Score=139, Evalue=2e-34, Organism=Escherichia coli, GI145693107, Length=252, Percent_Identity=34.5238095238095, Blast_Score=135, Evalue=4e-33, Organism=Escherichia coli, GI87081834, Length=236, Percent_Identity=41.1016949152542, Blast_Score=126, Evalue=2e-30, Organism=Escherichia coli, GI1788506, Length=263, Percent_Identity=34.9809885931559, Blast_Score=124, Evalue=7e-30, Organism=Escherichia coli, GI48994883, Length=248, Percent_Identity=35.8870967741936, Blast_Score=122, Evalue=2e-29, Organism=Escherichia coli, GI1787759, Length=239, Percent_Identity=33.0543933054393, Blast_Score=116, Evalue=2e-27, Organism=Escherichia coli, GI87081791, Length=258, Percent_Identity=31.0077519379845, Blast_Score=113, Evalue=1e-26, Organism=Escherichia coli, GI1789891, Length=248, Percent_Identity=29.8387096774194, Blast_Score=112, Evalue=2e-26, Organism=Escherichia coli, GI1788225, Length=248, Percent_Identity=30.6451612903226, Blast_Score=110, Evalue=8e-26, Organism=Escherichia coli, GI1787712, Length=246, Percent_Identity=32.520325203252, Blast_Score=105, Evalue=3e-24, Organism=Escherichia coli, GI1789032, Length=253, Percent_Identity=30.8300395256917, Blast_Score=104, Evalue=6e-24, Organism=Escherichia coli, GI1788761, Length=250, Percent_Identity=29.6, Blast_Score=102, Evalue=3e-23, Organism=Escherichia coli, GI1789672, Length=255, Percent_Identity=27.4509803921569, Blast_Score=100, Evalue=1e-22, Organism=Escherichia coli, GI1787548, Length=247, Percent_Identity=29.5546558704453, Blast_Score=99, Evalue=2e-22, Organism=Escherichia coli, GI1789864, Length=251, Percent_Identity=29.0836653386454, Blast_Score=97, Evalue=9e-22, Organism=Escherichia coli, GI1787370, Length=258, Percent_Identity=27.5193798449612, Blast_Score=97, Evalue=1e-21, Organism=Escherichia coli, GI1788644, Length=246, Percent_Identity=32.520325203252, Blast_Score=97, Evalue=2e-21, Organism=Escherichia coli, GI1787547, Length=241, Percent_Identity=28.6307053941909, Blast_Score=96, Evalue=2e-21, Organism=Escherichia coli, GI1790525, Length=242, Percent_Identity=26.0330578512397, Blast_Score=94, Evalue=8e-21, Organism=Escherichia coli, GI1787089, Length=225, Percent_Identity=29.3333333333333, Blast_Score=94, Evalue=1e-20, Organism=Escherichia coli, GI1786872, Length=251, Percent_Identity=29.0836653386454, Blast_Score=94, Evalue=1e-20, Organism=Escherichia coli, GI1787029, Length=233, Percent_Identity=28.3261802575107, Blast_Score=92, Evalue=5e-20, Organism=Escherichia coli, GI1790467, Length=247, Percent_Identity=27.5303643724696, Blast_Score=91, Evalue=7e-20, Organism=Escherichia coli, GI1787792, Length=244, Percent_Identity=31.1475409836066, Blast_Score=91, Evalue=8e-20, Organism=Escherichia coli, GI1786398, Length=238, Percent_Identity=27.7310924369748, Blast_Score=91, Evalue=1e-19, Organism=Escherichia coli, GI87081709, Length=253, Percent_Identity=26.4822134387352, Blast_Score=90, Evalue=1e-19, Organism=Escherichia coli, GI1789873, Length=223, Percent_Identity=33.6322869955157, Blast_Score=89, Evalue=3e-19, Organism=Escherichia coli, GI1786319, Length=230, Percent_Identity=28.2608695652174, Blast_Score=89, Evalue=3e-19, Organism=Escherichia coli, GI1787164, Length=246, Percent_Identity=32.520325203252, Blast_Score=88, Evalue=5e-19, Organism=Escherichia coli, GI1786703, Length=192, Percent_Identity=38.0208333333333, Blast_Score=88, Evalue=6e-19, Organism=Escherichia coli, GI1786253, Length=212, Percent_Identity=31.1320754716981, Blast_Score=87, Evalue=1e-18, Organism=Escherichia coli, GI1789890, Length=246, Percent_Identity=30.0813008130081, Blast_Score=86, Evalue=3e-18, Organism=Escherichia coli, GI1787105, Length=240, Percent_Identity=29.5833333333333, Blast_Score=83, Evalue=2e-17, Organism=Escherichia coli, GI1786803, Length=238, Percent_Identity=29.4117647058824, Blast_Score=80, Evalue=1e-16, Organism=Escherichia coli, GI1786345, Length=220, Percent_Identity=30.4545454545455, Blast_Score=80, Evalue=1e-16, Organism=Escherichia coli, GI1787112, Length=229, Percent_Identity=33.1877729257642, Blast_Score=80, Evalue=2e-16, Organism=Escherichia coli, GI1789991, Length=232, Percent_Identity=27.5862068965517, Blast_Score=79, Evalue=3e-16, Organism=Escherichia coli, GI1788210, Length=239, Percent_Identity=28.4518828451883, Blast_Score=79, Evalue=3e-16, Organism=Escherichia coli, GI1786563, Length=227, Percent_Identity=29.0748898678414, Blast_Score=79, Evalue=4e-16, Organism=Escherichia coli, GI87082267, Length=238, Percent_Identity=26.890756302521, Blast_Score=79, Evalue=4e-16, Organism=Escherichia coli, GI1790190, Length=214, Percent_Identity=27.5700934579439, Blast_Score=77, Evalue=8e-16, Organism=Escherichia coli, GI1790162, Length=257, Percent_Identity=25.2918287937743, Blast_Score=77, Evalue=1e-15, Organism=Escherichia coli, GI1788450, Length=238, Percent_Identity=26.4705882352941, Blast_Score=75, Evalue=4e-15, Organism=Escherichia coli, GI1788897, Length=246, Percent_Identity=30.0813008130081, Blast_Score=74, Evalue=7e-15, Organism=Escherichia coli, GI1790544, Length=257, Percent_Identity=27.6264591439689, Blast_Score=74, Evalue=1e-14, Organism=Escherichia coli, GI48995001, Length=232, Percent_Identity=26.2931034482759, Blast_Score=71, Evalue=9e-14, Organism=Escherichia coli, GI1790534, Length=213, Percent_Identity=30.0469483568075, Blast_Score=70, Evalue=1e-13, Organism=Escherichia coli, GI48994943, Length=233, Percent_Identity=24.8927038626609, Blast_Score=68, Evalue=5e-13, Organism=Escherichia coli, GI1788472, Length=241, Percent_Identity=24.896265560166, Blast_Score=65, Evalue=5e-12, Organism=Escherichia coli, GI1788053, Length=208, Percent_Identity=28.8461538461538, Blast_Score=65, Evalue=6e-12, Organism=Escherichia coli, GI1789593, Length=248, Percent_Identity=25.8064516129032, Blast_Score=64, Evalue=1e-11, Organism=Escherichia coli, GI87081782, Length=237, Percent_Identity=27.8481012658228, Blast_Score=62, Evalue=5e-11, Organism=Caenorhabditis elegans, GI193202349, Length=230, Percent_Identity=31.304347826087, Blast_Score=92, Evalue=3e-19, Organism=Caenorhabditis elegans, GI115533608, Length=242, Percent_Identity=28.099173553719, Blast_Score=90, Evalue=1e-18, Organism=Caenorhabditis elegans, GI25146777, Length=246, Percent_Identity=29.6747967479675, Blast_Score=85, Evalue=4e-17, Organism=Caenorhabditis elegans, GI193211015, Length=236, Percent_Identity=29.6610169491525, Blast_Score=81, Evalue=5e-16, Organism=Caenorhabditis elegans, GI71996809, Length=236, Percent_Identity=29.6610169491525, Blast_Score=81, Evalue=5e-16, Organism=Caenorhabditis elegans, GI193211017, Length=236, Percent_Identity=29.6610169491525, Blast_Score=80, Evalue=9e-16, Organism=Caenorhabditis elegans, GI71984940, Length=225, Percent_Identity=29.3333333333333, Blast_Score=80, Evalue=1e-15, Organism=Caenorhabditis elegans, GI71992290, Length=259, Percent_Identity=27.7992277992278, Blast_Score=77, Evalue=1e-14, Organism=Caenorhabditis elegans, GI115534520, Length=234, Percent_Identity=26.4957264957265, Blast_Score=70, Evalue=1e-12, Organism=Caenorhabditis elegans, GI17565586, Length=222, Percent_Identity=25.6756756756757, Blast_Score=67, Evalue=1e-11, Organism=Saccharomyces cerevisiae, GI6324985, Length=247, Percent_Identity=26.3157894736842, Blast_Score=74, Evalue=3e-14, Organism=Saccharomyces cerevisiae, GI6322640, Length=229, Percent_Identity=27.0742358078603, Blast_Score=65, Evalue=2e-11, Organism=Drosophila melanogaster, GI281363262, Length=258, Percent_Identity=29.0697674418605, Blast_Score=80, Evalue=1e-15, Organism=Drosophila melanogaster, GI24653245, Length=258, Percent_Identity=29.8449612403101, Blast_Score=80, Evalue=2e-15, Organism=Drosophila melanogaster, GI85724864, Length=221, Percent_Identity=32.1266968325792, Blast_Score=80, Evalue=2e-15, Organism=Drosophila melanogaster, GI24580555, Length=221, Percent_Identity=32.1266968325792, Blast_Score=80, Evalue=2e-15, Organism=Drosophila melanogaster, GI85816269, Length=221, Percent_Identity=32.1266968325792, Blast_Score=80, Evalue=2e-15, Organism=Drosophila melanogaster, GI24580553, Length=221, Percent_Identity=32.1266968325792, Blast_Score=80, Evalue=2e-15, Organism=Drosophila melanogaster, GI24643674, Length=220, Percent_Identity=26.8181818181818, Blast_Score=80, Evalue=2e-15, Organism=Drosophila melanogaster, GI161076684, Length=225, Percent_Identity=30.6666666666667, Blast_Score=77, Evalue=1e-14, Organism=Drosophila melanogaster, GI24581617, Length=225, Percent_Identity=30.6666666666667, Blast_Score=77, Evalue=1e-14, Organism=Drosophila melanogaster, GI24581615, Length=225, Percent_Identity=30.6666666666667, Blast_Score=77, Evalue=1e-14, Organism=Drosophila melanogaster, GI24641565, Length=231, Percent_Identity=29.004329004329, Blast_Score=77, Evalue=2e-14, Organism=Drosophila melanogaster, GI161076682, Length=225, Percent_Identity=30.6666666666667, Blast_Score=77, Evalue=2e-14, Organism=Drosophila melanogaster, GI17136662, Length=236, Percent_Identity=29.2372881355932, Blast_Score=71, Evalue=8e-13, Organism=Drosophila melanogaster, GI28573573, Length=228, Percent_Identity=25, Blast_Score=70, Evalue=2e-12, Organism=Drosophila melanogaster, GI28573571, Length=228, Percent_Identity=25, Blast_Score=70, Evalue=2e-12, Organism=Drosophila melanogaster, GI28574744, Length=216, Percent_Identity=27.7777777777778, Blast_Score=70, Evalue=2e-12, Organism=Drosophila melanogaster, GI24662800, Length=214, Percent_Identity=28.9719626168224, Blast_Score=68, Evalue=6e-12, Organism=Drosophila melanogaster, GI28574150, Length=226, Percent_Identity=25.2212389380531, Blast_Score=68, Evalue=8e-12, Organism=Drosophila melanogaster, GI116007328, Length=226, Percent_Identity=25.2212389380531, Blast_Score=68, Evalue=8e-12, Organism=Drosophila melanogaster, GI23397593, Length=239, Percent_Identity=27.1966527196653, Blast_Score=66, Evalue=2e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003439 - InterPro: IPR017871 - InterPro: IPR003593 - InterPro: IPR012700 - InterPro: IPR013563 [H]
Pfam domain/function: PF00005 ABC_tran; PF08352 oligo_HPY [H]
EC number: NA
Molecular weight: Translated: 29563; Mature: 29563
Theoretical pI: Translated: 6.53; Mature: 6.53
Prosite motif: PS00211 ABC_TRANSPORTER_1 ; PS50893 ABC_TRANSPORTER_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 3.3 %Met (Translated Protein) 3.7 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 3.3 %Met (Mature Protein) 3.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLDRVSSAASGAFTAADQPLLIADGLSKRYGRIDACRGVSFELFPGEVLAIVGESGSGKS CCCCHHHHCCCCEECCCCCEEEECCHHHHHCCCHHHCCCEEEECCCEEEEEEECCCCCHH TLLQMLSGQMTPSAGRVSYRMRDGVLRDLAELGEAERRLLLRTDWGFVHQDPAQGLRMAV HHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHCHHHHEEEEECCCCCCCCCHHHHHHHHH SAGANVGERLMAIGWNHYGKIRSVASDWLERVEIDTGRIDDAPRTYSGGMRQRLQIARNL HCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHH VTDPRLVFMDEPTGGLDVSVQARLLDLVRSLVAELGLAAIVVTHDLAVARLLSHRILVMK CCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEE SGRVIETGLTDQVLDDPREPYTQLLVSSILPA CCCEEECCCCHHHHCCCCCHHHHHHHHHHCCC >Mature Secondary Structure MLDRVSSAASGAFTAADQPLLIADGLSKRYGRIDACRGVSFELFPGEVLAIVGESGSGKS CCCCHHHHCCCCEECCCCCEEEECCHHHHHCCCHHHCCCEEEECCCEEEEEEECCCCCHH TLLQMLSGQMTPSAGRVSYRMRDGVLRDLAELGEAERRLLLRTDWGFVHQDPAQGLRMAV HHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHCHHHHEEEEECCCCCCCCCHHHHHHHHH SAGANVGERLMAIGWNHYGKIRSVASDWLERVEIDTGRIDDAPRTYSGGMRQRLQIARNL HCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHH VTDPRLVFMDEPTGGLDVSVQARLLDLVRSLVAELGLAAIVVTHDLAVARLLSHRILVMK CCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEE SGRVIETGLTDQVLDDPREPYTQLLVSSILPA CCCEEECCCCHHHHCCCCCHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 2155230; 1840580; 7610040; 9278503 [H]