| Definition | Rhodopseudomonas palustris TIE-1 chromosome, complete genome. |
|---|---|
| Accession | NC_011004 |
| Length | 5,744,041 |
Click here to switch to the map view.
The map label for this gene is phnL [H]
Identifier: 192289186
GI number: 192289186
Start: 799636
End: 800346
Strand: Reverse
Name: phnL [H]
Synonym: Rpal_0757
Alternate gene names: 192289186
Gene position: 800346-799636 (Counterclockwise)
Preceding gene: 192289187
Following gene: 192289185
Centisome position: 13.93
GC content: 66.95
Gene sequence:
>711_bases ATGACCATGACCCAAGCTCCCGCTCTCGTCGTCGATAACGCCCAGAAGAGTTTCGTTATGCATCTGCAGGGTGGCGTGAC GCTGCCGGTGGTGCGCGGCGTCAGCTTCCAGGTTCAGCCCGGCGAATGCGTCGTGCTGTCCGGCCCCTCCGGCGCGGGCA AATCATCGATCCTGAAAATGATCTTCGGCAATTATCGCTGCGACTCCGGCGCGATCCGTATCGCCCATGAGGGCGATACG CTCGACATCGCCACCGCACAGCCGCGGCAGATCCTCTCCGCGCGGCGCGGCAGCATCGGCTATGTCAGCCAATTCTTGCG CGCCGTCCCCCGCGTCGCGGCGCTCGACGTCGTGGCCGAGCCGCTGATCGTGCAAGGCACCGCCCGCGAGGCGGCGCGCG AACAGGCTGGCGTGCTGCTGCGCCGGCTCAACATTCCGGAGCGGCTGTGGACGCTGCCGCCGGCGACGTTCTCGGGCGGC GAACAACAGCGCGTCAACATCGCCCGCGGTTTCATCTCGCATACGCCGATCCTGCTGCTCGACGAGCCGACCGCATCGCT CGACGCCAAGAACCGCGCCGTGGTGGTCGAGCTGATCGCGGAGACCAAGGCGCAGGGCGCCGCGATCATCGCCATCGTGC ACGACGACGAGATCCGTGAGATCATCGCGGACCGCATCGTCGACGTGACCTCGTTTGCCGCCGCCGCATGA
Upstream 100 bases:
>100_bases AATCAGGCCGCGTAATCGAGACCGGGCTGACCGACCAGGTGCTCGACGATCCGCGCGAACCCTATACGCAACTGCTCGTC TCCTCGATCCTTCCGGCGTG
Downstream 100 bases:
>100_bases CCAATGGAATCAACGAGACCATGAACAATTCGCAGGAGATGGTGCTGGGCAATGCCCGGCTGGTGCTGGCCGACCGAGTG ATCGAGCACGGCTGGGTCGC
Product: phosphonate C-P lyase system protein PhnL
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 236; Mature: 235
Protein sequence:
>236_residues MTMTQAPALVVDNAQKSFVMHLQGGVTLPVVRGVSFQVQPGECVVLSGPSGAGKSSILKMIFGNYRCDSGAIRIAHEGDT LDIATAQPRQILSARRGSIGYVSQFLRAVPRVAALDVVAEPLIVQGTAREAAREQAGVLLRRLNIPERLWTLPPATFSGG EQQRVNIARGFISHTPILLLDEPTASLDAKNRAVVVELIAETKAQGAAIIAIVHDDEIREIIADRIVDVTSFAAAA
Sequences:
>Translated_236_residues MTMTQAPALVVDNAQKSFVMHLQGGVTLPVVRGVSFQVQPGECVVLSGPSGAGKSSILKMIFGNYRCDSGAIRIAHEGDT LDIATAQPRQILSARRGSIGYVSQFLRAVPRVAALDVVAEPLIVQGTAREAAREQAGVLLRRLNIPERLWTLPPATFSGG EQQRVNIARGFISHTPILLLDEPTASLDAKNRAVVVELIAETKAQGAAIIAIVHDDEIREIIADRIVDVTSFAAAA >Mature_235_residues TMTQAPALVVDNAQKSFVMHLQGGVTLPVVRGVSFQVQPGECVVLSGPSGAGKSSILKMIFGNYRCDSGAIRIAHEGDTL DIATAQPRQILSARRGSIGYVSQFLRAVPRVAALDVVAEPLIVQGTAREAAREQAGVLLRRLNIPERLWTLPPATFSGGE QQRVNIARGFISHTPILLLDEPTASLDAKNRAVVVELIAETKAQGAAIIAIVHDDEIREIIADRIVDVTSFAAAA
Specific function: Part of the binding-protein-dependent transport system for alkylphosphonates. Probably responsible for energy coupling to the transport system [H]
COG id: COG4778
COG function: function code P; ABC-type phosphonate transport system, ATPase component
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 ABC transporter domain [H]
Homologues:
Organism=Homo sapiens, GI31657092, Length=231, Percent_Identity=30.7359307359307, Blast_Score=83, Evalue=2e-16, Organism=Homo sapiens, GI9955963, Length=212, Percent_Identity=33.9622641509434, Blast_Score=77, Evalue=1e-14, Organism=Homo sapiens, GI105990541, Length=202, Percent_Identity=25.7425742574257, Blast_Score=70, Evalue=1e-12, Organism=Homo sapiens, GI255708477, Length=198, Percent_Identity=29.2929292929293, Blast_Score=70, Evalue=2e-12, Organism=Homo sapiens, GI9961250, Length=199, Percent_Identity=28.643216080402, Blast_Score=70, Evalue=2e-12, Organism=Homo sapiens, GI4505771, Length=191, Percent_Identity=30.3664921465969, Blast_Score=69, Evalue=4e-12, Organism=Homo sapiens, GI9961252, Length=199, Percent_Identity=28.643216080402, Blast_Score=69, Evalue=5e-12, Organism=Homo sapiens, GI42741659, Length=190, Percent_Identity=30.5263157894737, Blast_Score=68, Evalue=8e-12, Organism=Homo sapiens, GI27881501, Length=209, Percent_Identity=28.7081339712919, Blast_Score=67, Evalue=1e-11, Organism=Homo sapiens, GI30795238, Length=209, Percent_Identity=28.7081339712919, Blast_Score=67, Evalue=1e-11, Organism=Homo sapiens, GI171184400, Length=196, Percent_Identity=32.1428571428571, Blast_Score=67, Evalue=2e-11, Organism=Homo sapiens, GI116734710, Length=208, Percent_Identity=27.8846153846154, Blast_Score=65, Evalue=7e-11, Organism=Escherichia coli, GI1790534, Length=216, Percent_Identity=56.4814814814815, Blast_Score=256, Evalue=1e-69, Organism=Escherichia coli, GI87081834, Length=214, Percent_Identity=32.2429906542056, Blast_Score=102, Evalue=2e-23, Organism=Escherichia coli, GI1786703, Length=194, Percent_Identity=34.020618556701, Blast_Score=101, Evalue=5e-23, Organism=Escherichia coli, GI1787105, Length=223, Percent_Identity=28.6995515695067, Blast_Score=100, Evalue=8e-23, Organism=Escherichia coli, GI1789873, Length=185, Percent_Identity=34.5945945945946, Blast_Score=100, Evalue=1e-22, Organism=Escherichia coli, GI1788225, Length=216, Percent_Identity=31.0185185185185, Blast_Score=97, Evalue=1e-21, Organism=Escherichia coli, GI1787029, Length=199, Percent_Identity=31.6582914572864, Blast_Score=92, Evalue=3e-20, Organism=Escherichia coli, GI1789672, Length=199, Percent_Identity=31.1557788944724, Blast_Score=91, Evalue=6e-20, Organism=Escherichia coli, GI1787089, Length=195, Percent_Identity=32.3076923076923, Blast_Score=89, Evalue=3e-19, Organism=Escherichia coli, GI1786698, Length=209, Percent_Identity=30.622009569378, Blast_Score=85, Evalue=4e-18, Organism=Escherichia coli, GI1787712, Length=197, Percent_Identity=30.9644670050761, Blast_Score=82, Evalue=3e-17, Organism=Escherichia coli, GI48994997, Length=200, Percent_Identity=33, Blast_Score=82, Evalue=3e-17, Organism=Escherichia coli, GI1789962, Length=198, Percent_Identity=27.7777777777778, Blast_Score=82, Evalue=4e-17, Organism=Escherichia coli, GI1787500, Length=206, Percent_Identity=29.6116504854369, Blast_Score=80, Evalue=1e-16, Organism=Escherichia coli, GI145693107, Length=201, Percent_Identity=31.8407960199005, Blast_Score=79, Evalue=2e-16, Organism=Escherichia coli, GI1786398, Length=207, Percent_Identity=28.5024154589372, Blast_Score=79, Evalue=2e-16, Organism=Escherichia coli, GI1790467, Length=199, Percent_Identity=30.1507537688442, Blast_Score=78, Evalue=5e-16, Organism=Escherichia coli, GI1787370, Length=199, Percent_Identity=31.6582914572864, Blast_Score=77, Evalue=9e-16, Organism=Escherichia coli, GI1788644, Length=194, Percent_Identity=30.4123711340206, Blast_Score=76, Evalue=2e-15, Organism=Escherichia coli, GI1790190, Length=210, Percent_Identity=29.0476190476191, Blast_Score=75, Evalue=3e-15, Organism=Escherichia coli, GI1788450, Length=186, Percent_Identity=31.7204301075269, Blast_Score=75, Evalue=4e-15, Organism=Escherichia coli, GI48995001, Length=206, Percent_Identity=31.0679611650485, Blast_Score=74, Evalue=7e-15, Organism=Escherichia coli, GI1786872, Length=182, Percent_Identity=29.1208791208791, Blast_Score=74, Evalue=7e-15, Organism=Escherichia coli, GI1788761, Length=225, Percent_Identity=30.2222222222222, Blast_Score=74, Evalue=8e-15, Organism=Escherichia coli, GI1789032, Length=197, Percent_Identity=29.9492385786802, Blast_Score=74, Evalue=9e-15, Organism=Escherichia coli, GI1786563, Length=211, Percent_Identity=29.3838862559242, Blast_Score=72, Evalue=3e-14, Organism=Escherichia coli, GI1787758, Length=202, Percent_Identity=26.2376237623762, Blast_Score=72, Evalue=3e-14, Organism=Escherichia coli, GI1788165, Length=193, Percent_Identity=27.979274611399, Blast_Score=72, Evalue=4e-14, Organism=Escherichia coli, GI87082267, Length=209, Percent_Identity=29.1866028708134, Blast_Score=72, Evalue=4e-14, Organism=Escherichia coli, GI1788897, Length=234, Percent_Identity=27.7777777777778, Blast_Score=72, Evalue=5e-14, Organism=Escherichia coli, GI1788506, Length=212, Percent_Identity=30.6603773584906, Blast_Score=70, Evalue=1e-13, Organism=Escherichia coli, GI1789593, Length=195, Percent_Identity=32.3076923076923, Blast_Score=70, Evalue=1e-13, Organism=Escherichia coli, GI1787759, Length=210, Percent_Identity=29.5238095238095, Blast_Score=69, Evalue=2e-13, Organism=Escherichia coli, GI1786253, Length=197, Percent_Identity=32.994923857868, Blast_Score=69, Evalue=3e-13, Organism=Escherichia coli, GI1786319, Length=206, Percent_Identity=28.6407766990291, Blast_Score=69, Evalue=3e-13, Organism=Escherichia coli, GI1788472, Length=191, Percent_Identity=28.2722513089005, Blast_Score=68, Evalue=4e-13, Organism=Escherichia coli, GI1788210, Length=208, Percent_Identity=28.8461538461538, Blast_Score=68, Evalue=6e-13, Organism=Escherichia coli, GI1788053, Length=210, Percent_Identity=28.0952380952381, Blast_Score=66, Evalue=2e-12, Organism=Escherichia coli, GI1787792, Length=198, Percent_Identity=31.3131313131313, Blast_Score=66, Evalue=2e-12, Organism=Escherichia coli, GI1789891, Length=204, Percent_Identity=29.9019607843137, Blast_Score=65, Evalue=3e-12, Organism=Escherichia coli, GI1790739, Length=207, Percent_Identity=28.5024154589372, Blast_Score=65, Evalue=4e-12, Organism=Escherichia coli, GI1787112, Length=179, Percent_Identity=30.1675977653631, Blast_Score=65, Evalue=4e-12, Organism=Escherichia coli, GI87081709, Length=226, Percent_Identity=27.4336283185841, Blast_Score=64, Evalue=8e-12, Organism=Escherichia coli, GI48994883, Length=212, Percent_Identity=27.8301886792453, Blast_Score=62, Evalue=3e-11, Organism=Escherichia coli, GI1789991, Length=201, Percent_Identity=25.8706467661692, Blast_Score=62, Evalue=3e-11, Organism=Escherichia coli, GI87081791, Length=197, Percent_Identity=27.4111675126904, Blast_Score=61, Evalue=6e-11, Organism=Escherichia coli, GI1789963, Length=188, Percent_Identity=29.2553191489362, Blast_Score=61, Evalue=8e-11, Organism=Caenorhabditis elegans, GI193211017, Length=204, Percent_Identity=31.8627450980392, Blast_Score=89, Evalue=2e-18, Organism=Caenorhabditis elegans, GI71996809, Length=204, Percent_Identity=31.8627450980392, Blast_Score=88, Evalue=5e-18, Organism=Caenorhabditis elegans, GI193211015, Length=204, Percent_Identity=31.8627450980392, Blast_Score=87, Evalue=6e-18, Organism=Caenorhabditis elegans, GI25146777, Length=226, Percent_Identity=32.7433628318584, Blast_Score=86, Evalue=1e-17, Organism=Caenorhabditis elegans, GI212646699, Length=191, Percent_Identity=30.8900523560209, Blast_Score=83, Evalue=1e-16, Organism=Caenorhabditis elegans, GI17558664, Length=211, Percent_Identity=32.2274881516588, Blast_Score=74, Evalue=5e-14, Organism=Caenorhabditis elegans, GI17541710, Length=197, Percent_Identity=30.9644670050761, Blast_Score=74, Evalue=6e-14, Organism=Caenorhabditis elegans, GI71984940, Length=188, Percent_Identity=32.9787234042553, Blast_Score=74, Evalue=6e-14, Organism=Caenorhabditis elegans, GI115533608, Length=236, Percent_Identity=26.271186440678, Blast_Score=72, Evalue=3e-13, Organism=Caenorhabditis elegans, GI17569143, Length=192, Percent_Identity=32.2916666666667, Blast_Score=70, Evalue=1e-12, Organism=Caenorhabditis elegans, GI193202349, Length=196, Percent_Identity=29.0816326530612, Blast_Score=69, Evalue=2e-12, Organism=Caenorhabditis elegans, GI17569145, Length=212, Percent_Identity=28.7735849056604, Blast_Score=69, Evalue=3e-12, Organism=Caenorhabditis elegans, GI115535101, Length=217, Percent_Identity=29.0322580645161, Blast_Score=65, Evalue=2e-11, Organism=Caenorhabditis elegans, GI17567265, Length=211, Percent_Identity=29.3838862559242, Blast_Score=65, Evalue=3e-11, Organism=Caenorhabditis elegans, GI17567269, Length=196, Percent_Identity=28.5714285714286, Blast_Score=65, Evalue=4e-11, Organism=Saccharomyces cerevisiae, GI6323217, Length=206, Percent_Identity=28.6407766990291, Blast_Score=76, Evalue=6e-15, Organism=Saccharomyces cerevisiae, GI6322640, Length=202, Percent_Identity=30.1980198019802, Blast_Score=70, Evalue=3e-13, Organism=Saccharomyces cerevisiae, GI6324498, Length=199, Percent_Identity=30.6532663316583, Blast_Score=64, Evalue=2e-11, Organism=Drosophila melanogaster, GI21357907, Length=205, Percent_Identity=33.1707317073171, Blast_Score=84, Evalue=7e-17, Organism=Drosophila melanogaster, GI85726357, Length=197, Percent_Identity=29.9492385786802, Blast_Score=77, Evalue=1e-14, Organism=Drosophila melanogaster, GI19920532, Length=205, Percent_Identity=29.2682926829268, Blast_Score=74, Evalue=8e-14, Organism=Drosophila melanogaster, GI24580930, Length=205, Percent_Identity=29.2682926829268, Blast_Score=74, Evalue=8e-14, Organism=Drosophila melanogaster, GI24666092, Length=206, Percent_Identity=27.1844660194175, Blast_Score=70, Evalue=8e-13, Organism=Drosophila melanogaster, GI85816269, Length=193, Percent_Identity=26.4248704663212, Blast_Score=70, Evalue=2e-12, Organism=Drosophila melanogaster, GI24580553, Length=193, Percent_Identity=26.4248704663212, Blast_Score=70, Evalue=2e-12, Organism=Drosophila melanogaster, GI85724864, Length=193, Percent_Identity=26.4248704663212, Blast_Score=70, Evalue=2e-12, Organism=Drosophila melanogaster, GI24580555, Length=193, Percent_Identity=26.4248704663212, Blast_Score=70, Evalue=2e-12, Organism=Drosophila melanogaster, GI28574744, Length=191, Percent_Identity=27.2251308900524, Blast_Score=67, Evalue=1e-11, Organism=Drosophila melanogaster, GI17136662, Length=195, Percent_Identity=27.6923076923077, Blast_Score=65, Evalue=3e-11, Organism=Drosophila melanogaster, GI24659289, Length=197, Percent_Identity=27.4111675126904, Blast_Score=65, Evalue=4e-11, Organism=Drosophila melanogaster, GI28574533, Length=179, Percent_Identity=29.608938547486, Blast_Score=65, Evalue=4e-11, Organism=Drosophila melanogaster, GI24653245, Length=196, Percent_Identity=27.0408163265306, Blast_Score=64, Evalue=6e-11, Organism=Drosophila melanogaster, GI281363262, Length=196, Percent_Identity=27.0408163265306, Blast_Score=64, Evalue=8e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003439 - InterPro: IPR017871 - InterPro: IPR003593 - InterPro: IPR012701 [H]
Pfam domain/function: PF00005 ABC_tran [H]
EC number: NA
Molecular weight: Translated: 25149; Mature: 25018
Theoretical pI: Translated: 7.58; Mature: 7.58
Prosite motif: PS00211 ABC_TRANSPORTER_1 ; PS50893 ABC_TRANSPORTER_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 1.7 %Met (Translated Protein) 2.5 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 1.3 %Met (Mature Protein) 2.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTMTQAPALVVDNAQKSFVMHLQGGVTLPVVRGVSFQVQPGECVVLSGPSGAGKSSILKM CCCCCCCEEEEECCCCEEEEEECCCEEEEEECCEEEEECCCCEEEEECCCCCCHHHHHHH IFGNYRCDSGAIRIAHEGDTLDIATAQPRQILSARRGSIGYVSQFLRAVPRVAALDVVAE HHCCCCCCCCCEEEEECCCEEEEECCCHHHHHHHCCCCHHHHHHHHHHCCHHHHHHHHHC PLIVQGTAREAAREQAGVLLRRLNIPERLWTLPPATFSGGEQQRVNIARGFISHTPILLL CEEEECCHHHHHHHHHHHHHHHCCCCHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCEEEE DEPTASLDAKNRAVVVELIAETKAQGAAIIAIVHDDEIREIIADRIVDVTSFAAAA CCCCCCCCCCCCEEEEEEEHHHCCCCEEEEEEEECHHHHHHHHHHHHHHHHHHHCC >Mature Secondary Structure TMTQAPALVVDNAQKSFVMHLQGGVTLPVVRGVSFQVQPGECVVLSGPSGAGKSSILKM CCCCCCEEEEECCCCEEEEEECCCEEEEEECCEEEEECCCCEEEEECCCCCCHHHHHHH IFGNYRCDSGAIRIAHEGDTLDIATAQPRQILSARRGSIGYVSQFLRAVPRVAALDVVAE HHCCCCCCCCCEEEEECCCEEEEECCCHHHHHHHCCCCHHHHHHHHHHCCHHHHHHHHHC PLIVQGTAREAAREQAGVLLRRLNIPERLWTLPPATFSGGEQQRVNIARGFISHTPILLL CEEEECCHHHHHHHHHHHHHHHCCCCHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCEEEE DEPTASLDAKNRAVVVELIAETKAQGAAIIAIVHDDEIREIIADRIVDVTSFAAAA CCCCCCCCCCCCEEEEEEEHHHCCCCEEEEEEEECHHHHHHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 2155230; 1840580; 7610040; 9278503 [H]