| Definition | Rhodopseudomonas palustris TIE-1 chromosome, complete genome. |
|---|---|
| Accession | NC_011004 |
| Length | 5,744,041 |
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The map label for this gene is cobT [H]
Identifier: 192288927
GI number: 192288927
Start: 540522
End: 542426
Strand: Reverse
Name: cobT [H]
Synonym: Rpal_0497
Alternate gene names: 192288927
Gene position: 542426-540522 (Counterclockwise)
Preceding gene: 192288928
Following gene: 192288926
Centisome position: 9.44
GC content: 67.45
Gene sequence:
>1905_bases ATGAGCACCACGACCAACAGCAAACTCCGCACCGGATCGAAGGAAGCGCCGACCGAGCCGTTCAAGCGCGCCGTGACCTC GTGCCTGCGCGCCATCGCCAAGGCGCCGGAGCTGGAGGTTACTTTCGCAGCCGAGCGCCCCGGCCTCGCGCCCGGCAAGG CCCGGCTCCCCGAGCCGGCGCGCAAGATGAGCAAGCGCGACGCCGCGATTGTGCGCGGCCATGCCGACTCGATCGCGCTG AAGCTCGCCTGTCACGACCCGAAAGTGCATCGCAAGCTGATGCCGGGTAATCCGCAGGCCCGCGGCGTGTTCGAAGCGGT CGAGCAGGCGCGCGTCGAAGCGCTCGGCGCGCGGCGGATGGCGGGCGTCGCCAAGAACCTCACCGCGATGCTCGACGATC ATTTCCATCGCGGCAAGTTCGACGAGATCACCGACCGCGCGGATGCGCCGCTGTCGGATGCGCTGGCTATGCTGGTGCGC GAGCGGCTGACGGGTCTGGCGCCGCCCACGGCGGCCAAGAAACTGGTCGACCTGTGGCGGCCGGTGCTCGAAGACAAGCT CGGTCCGCGGCTCGATCAGCTCGAACACTTCGCCGACAACCAGGCCAAGTTCGGCGACGTGATCCACGACATGCTCGACG CACTCGAGCTTGGCGATGATCGCGACACCGAGACCGACGAAGACGAGAGCCAGGACGATAAGCAGGAAGGCGAGAACGAT CAGTCCGGCGCCGAGGGCGAGCCGCAGGGCGAAGCCGCGCAGGAGATGAGCGCCGAGCAGGCCGAAGCGACCAGCGACGA GGTCAGCGACAGCCAGATGGAAAGCGCCCAGGCATCGACCTCCGACGCCTTCGACGATTCCGAACTCGGCGAGGACGAAA CGCCGGGCGAAGCCACCCGTCCGCACAATCGCGGCGCCAACGAGCCGCGCGGGCCGGAGTATCACGCCTTCGCGCCGAAG TTCGACGAAATCGTCGCCGCCGAAGATTTGTGCGACCACGACGAACTGGAACGGCTGCGCAGCTATCTGGACAAGCAGTT GGCGCATCTGCAGGGGATCGTCGCCCGCCTCGCCAACCGGCTGCAGCGCCGGCTGATGGCGCAGCAGAACCGCGCCTGGG ACTTCGACCTCGAAGAAGGCATTCTCGATCCGGCGCGCCTGTCACGCGTGGTGATCGATCCGTTCCATCCGCTGTCGTTC ATGAGCGAGAAGGAAGCGACCTTCCGCGACACCGTAGTGACGCTGCTGCTCGACAATTCCGGTTCGATGCGCGGTCGCCC GATCACGGTGGCGGCGACCTGCGCCGACATTCTGGCGCGGACGCTGGAGCGTTGCGGCGTCAAGGTCGAGATCCTCGGCT TCACCACGCGCGCCTGGAAGGGCGGACAATCGCGCGAGGCTTGGCTCGCCGCCGGCAAGCCGGCCAATCCGGGCCGCCTC AACGATCTCCGGCATATCATCTACAAGTCGGCGGACGCGCCGTGGCGCCGGGCTCGCAAGAACCTCGGGCTGATGATGCG CGAGGGCCTGCTCAAGGAGAACATCGACGGCGAAGCGCTCGACTGGGCGCATAAGCGTCTGCTCGGCCGCCCCGAGCAGC GCAAGATCCTGATGATGATCTCGGACGGCGCCCCGGTCGACGACTCGACGCTGTCGGTCAATCCCGGCAACTACCTCGAA CGGCACCTGCGCCACATCATCGAGGAGATCGAGACCCGCTCGCCGGTGGAGCTGATCGCGATCGGCATCGGCCACGACGT GACGCGCTACTATCGTCGCGCCGTGACCATCGTCGACGCCGAAGAGCTCGGCGGCGCCATCACCGAGAAGCTCGCCGAGC TGTTCAGCGAGACCGCCACCCCGGCCGCGACACCGGGCCCGCGACGCCACCGTCTGCATTCGTGA
Upstream 100 bases:
>100_bases TTCAGGCTCCAGGTTTCTATTCGACCTGCGGTTATAAAAAGTTCGGCGTCATCGACGGCTATCCTGACGATGTGACGCGG CACTGGTTCATGAAAGCACT
Downstream 100 bases:
>100_bases GCGCTCTTGGGCTGAGATGAGCCGATGAACGCTCCGCGGGGCGAGGCTGGGAAGCAGAGCGACCACACCGCGACAGAGGA CGGTCGCGCGGCTGCTGCCG
Product: cobalt chelatase, pCobT subunit
Products: NA
Alternate protein names: Hydrogenobyrinic acid a,c-diamide cobaltochelatase subunit CobT [H]
Number of amino acids: Translated: 634; Mature: 633
Protein sequence:
>634_residues MSTTTNSKLRTGSKEAPTEPFKRAVTSCLRAIAKAPELEVTFAAERPGLAPGKARLPEPARKMSKRDAAIVRGHADSIAL KLACHDPKVHRKLMPGNPQARGVFEAVEQARVEALGARRMAGVAKNLTAMLDDHFHRGKFDEITDRADAPLSDALAMLVR ERLTGLAPPTAAKKLVDLWRPVLEDKLGPRLDQLEHFADNQAKFGDVIHDMLDALELGDDRDTETDEDESQDDKQEGEND QSGAEGEPQGEAAQEMSAEQAEATSDEVSDSQMESAQASTSDAFDDSELGEDETPGEATRPHNRGANEPRGPEYHAFAPK FDEIVAAEDLCDHDELERLRSYLDKQLAHLQGIVARLANRLQRRLMAQQNRAWDFDLEEGILDPARLSRVVIDPFHPLSF MSEKEATFRDTVVTLLLDNSGSMRGRPITVAATCADILARTLERCGVKVEILGFTTRAWKGGQSREAWLAAGKPANPGRL NDLRHIIYKSADAPWRRARKNLGLMMREGLLKENIDGEALDWAHKRLLGRPEQRKILMMISDGAPVDDSTLSVNPGNYLE RHLRHIIEEIETRSPVELIAIGIGHDVTRYYRRAVTIVDAEELGGAITEKLAELFSETATPAATPGPRRHRLHS
Sequences:
>Translated_634_residues MSTTTNSKLRTGSKEAPTEPFKRAVTSCLRAIAKAPELEVTFAAERPGLAPGKARLPEPARKMSKRDAAIVRGHADSIAL KLACHDPKVHRKLMPGNPQARGVFEAVEQARVEALGARRMAGVAKNLTAMLDDHFHRGKFDEITDRADAPLSDALAMLVR ERLTGLAPPTAAKKLVDLWRPVLEDKLGPRLDQLEHFADNQAKFGDVIHDMLDALELGDDRDTETDEDESQDDKQEGEND QSGAEGEPQGEAAQEMSAEQAEATSDEVSDSQMESAQASTSDAFDDSELGEDETPGEATRPHNRGANEPRGPEYHAFAPK FDEIVAAEDLCDHDELERLRSYLDKQLAHLQGIVARLANRLQRRLMAQQNRAWDFDLEEGILDPARLSRVVIDPFHPLSF MSEKEATFRDTVVTLLLDNSGSMRGRPITVAATCADILARTLERCGVKVEILGFTTRAWKGGQSREAWLAAGKPANPGRL NDLRHIIYKSADAPWRRARKNLGLMMREGLLKENIDGEALDWAHKRLLGRPEQRKILMMISDGAPVDDSTLSVNPGNYLE RHLRHIIEEIETRSPVELIAIGIGHDVTRYYRRAVTIVDAEELGGAITEKLAELFSETATPAATPGPRRHRLHS >Mature_633_residues STTTNSKLRTGSKEAPTEPFKRAVTSCLRAIAKAPELEVTFAAERPGLAPGKARLPEPARKMSKRDAAIVRGHADSIALK LACHDPKVHRKLMPGNPQARGVFEAVEQARVEALGARRMAGVAKNLTAMLDDHFHRGKFDEITDRADAPLSDALAMLVRE RLTGLAPPTAAKKLVDLWRPVLEDKLGPRLDQLEHFADNQAKFGDVIHDMLDALELGDDRDTETDEDESQDDKQEGENDQ SGAEGEPQGEAAQEMSAEQAEATSDEVSDSQMESAQASTSDAFDDSELGEDETPGEATRPHNRGANEPRGPEYHAFAPKF DEIVAAEDLCDHDELERLRSYLDKQLAHLQGIVARLANRLQRRLMAQQNRAWDFDLEEGILDPARLSRVVIDPFHPLSFM SEKEATFRDTVVTLLLDNSGSMRGRPITVAATCADILARTLERCGVKVEILGFTTRAWKGGQSREAWLAAGKPANPGRLN DLRHIIYKSADAPWRRARKNLGLMMREGLLKENIDGEALDWAHKRLLGRPEQRKILMMISDGAPVDDSTLSVNPGNYLER HLRHIIEEIETRSPVELIAIGIGHDVTRYYRRAVTIVDAEELGGAITEKLAELFSETATPAATPGPRRHRLHS
Specific function: Catalyzes cobalt insertion in the corrin ring [H]
COG id: COG4547
COG function: function code H; Cobalamin biosynthesis protein CobT (nicotinate-mononucleotide:5, 6-dimethylbenzimidazole phosphoribosyltransferase)
Gene ontology:
Cell location: Cytoplasm (Potential) [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Contains 1 VWFA domain [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR006538 - InterPro: IPR002035 [H]
Pfam domain/function: PF06213 CobT [H]
EC number: =6.6.1.2 [H]
Molecular weight: Translated: 70151; Mature: 70019
Theoretical pI: Translated: 5.32; Mature: 5.32
Prosite motif: PS50234 VWFA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 2.5 %Met (Translated Protein) 3.3 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 2.4 %Met (Mature Protein) 3.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSTTTNSKLRTGSKEAPTEPFKRAVTSCLRAIAKAPELEVTFAAERPGLAPGKARLPEPA CCCCCCCHHCCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCHH RKMSKRDAAIVRGHADSIALKLACHDPKVHRKLMPGNPQARGVFEAVEQARVEALGARRM HHHHHHCHHHHCCCCCCEEEEEEECCHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHH AGVAKNLTAMLDDHFHRGKFDEITDRADAPLSDALAMLVRERLTGLAPPTAAKKLVDLWR HHHHHHHHHHHHHHHCCCCCHHHHHHCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH PVLEDKLGPRLDQLEHFADNQAKFGDVIHDMLDALELGDDRDTETDEDESQDDKQEGEND HHHHHHCCCCHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHCCCCC QSGAEGEPQGEAAQEMSAEQAEATSDEVSDSQMESAQASTSDAFDDSELGEDETPGEATR CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHCCCCCCCCCCCC PHNRGANEPRGPEYHAFAPKFDEIVAAEDLCDHDELERLRSYLDKQLAHLQGIVARLANR CCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH LQRRLMAQQNRAWDFDLEEGILDPARLSRVVIDPFHPLSFMSEKEATFRDTVVTLLLDNS HHHHHHHHHCCCCCCCHHHCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHEEEEEECCC GSMRGRPITVAATCADILARTLERCGVKVEILGFTTRAWKGGQSREAWLAAGKPANPGRL CCCCCCCEEHHHHHHHHHHHHHHHCCCEEEEEEEEHHHCCCCCCCCHHEECCCCCCCCHH NDLRHIIYKSADAPWRRARKNLGLMMREGLLKENIDGEALDWAHKRLLGRPEQRKILMMI HHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCEEEEEE SDGAPVDDSTLSVNPGNYLERHLRHIIEEIETRSPVELIAIGIGHDVTRYYRRAVTIVDA ECCCCCCCCEEECCCCHHHHHHHHHHHHHHHCCCCEEEEEEECCHHHHHHHHHHHHEECH EELGGAITEKLAELFSETATPAATPGPRRHRLHS HHHCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCC >Mature Secondary Structure STTTNSKLRTGSKEAPTEPFKRAVTSCLRAIAKAPELEVTFAAERPGLAPGKARLPEPA CCCCCCHHCCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCHH RKMSKRDAAIVRGHADSIALKLACHDPKVHRKLMPGNPQARGVFEAVEQARVEALGARRM HHHHHHCHHHHCCCCCCEEEEEEECCHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHH AGVAKNLTAMLDDHFHRGKFDEITDRADAPLSDALAMLVRERLTGLAPPTAAKKLVDLWR HHHHHHHHHHHHHHHCCCCCHHHHHHCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH PVLEDKLGPRLDQLEHFADNQAKFGDVIHDMLDALELGDDRDTETDEDESQDDKQEGEND HHHHHHCCCCHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHCCCCC QSGAEGEPQGEAAQEMSAEQAEATSDEVSDSQMESAQASTSDAFDDSELGEDETPGEATR CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHCCCCCCCCCCCC PHNRGANEPRGPEYHAFAPKFDEIVAAEDLCDHDELERLRSYLDKQLAHLQGIVARLANR CCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH LQRRLMAQQNRAWDFDLEEGILDPARLSRVVIDPFHPLSFMSEKEATFRDTVVTLLLDNS HHHHHHHHHCCCCCCCHHHCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHEEEEEECCC GSMRGRPITVAATCADILARTLERCGVKVEILGFTTRAWKGGQSREAWLAAGKPANPGRL CCCCCCCEEHHHHHHHHHHHHHHHCCCEEEEEEEEHHHCCCCCCCCHHEECCCCCCCCHH NDLRHIIYKSADAPWRRARKNLGLMMREGLLKENIDGEALDWAHKRLLGRPEQRKILMMI HHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCEEEEEE SDGAPVDDSTLSVNPGNYLERHLRHIIEEIETRSPVELIAIGIGHDVTRYYRRAVTIVDA ECCCCCCCCEEECCCCHHHHHHHHHHHHHHHCCCCEEEEEEECCHHHHHHHHHHHHEECH EELGGAITEKLAELFSETATPAATPGPRRHRLHS HHHCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 1917840 [H]