| Definition | Rhodopseudomonas palustris TIE-1 chromosome, complete genome. |
|---|---|
| Accession | NC_011004 |
| Length | 5,744,041 |
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The map label for this gene is 192288926
Identifier: 192288926
GI number: 192288926
Start: 539349
End: 540497
Strand: Reverse
Name: 192288926
Synonym: Rpal_0496
Alternate gene names: NA
Gene position: 540497-539349 (Counterclockwise)
Preceding gene: 192288927
Following gene: 192288923
Centisome position: 9.41
GC content: 67.1
Gene sequence:
>1149_bases ATGAACGCTCCGCGGGGCGAGGCTGGGAAGCAGAGCGACCACACCGCGACAGAGGACGGTCGCGCGGCTGCTGCCGCACA GGACTTCGCCACGACGACGCGTCGCCATTTACTTGCGGGCGGCCTGTGGCTTGGCGGCGCCGCCACGTTGGCCGGTTTCG TGCCGACCCTGGCGCTGGCGCAAACCAAACCGGTCGAAGCCGACGAGCTGACTCCGCCGGCACCGCGTTCGATCGAGGTG CGGGCCCGCCCGATCGATCACTTCGATCTGCGCGACCGCGCCCATCGCCAGTTCGGTGCGCTGCAGTTTCGCAGCGGCCT GATCCTGACCTCCGGTTTCCGCGGCTTCGGCGGGCTATCCGCGCTGCGGCTCGATCCCCGCGGCGAGCGGTTCGTTGCGA TCAGCGACAAGGCCACCTGGTTCACCGGCCGCATCGTCTATGACGGAACGGCGCTGAGCGGTCTTGCCGACGTCGAGGCG GCGCCGCTGCTCGGCCCTGACGGCAAACCGCTGCGGTCACGTAAGTGGTACGACAGCGAGTCGCTCGCATTCGACGGCGG CACGGCCTATGTGGGCTTCGAGCGGGTCAACCAGATCGTCAAATTCGACTTCGGGCGCGACGGCATCCGCGCGCGTGGCC AGCCGATCGCGGTGCCCCCGGCGCTGCGCAAGCTACCGAACAACAAGGGCATCGAATCGCTGGTGATGGTGCCGAAGCCG CACCCGCTGGCCGGCACGCTGATCGCGCTGTCCGAGCGCGGCCTCGATGCCGAGCGCAACACCATCGGCTTCCTGATTGG CGGCAAGTCTCCCGGGCAGTTCTCGGTCCGCCGCACTGAGAACTACGACATTGCCGACGCTGCTCTGATGCATGGCGGCG AGCTGTTGATCCTGGAGCGCAAGTTCTCCTGGTTCGAGGGCGTGCACATCCGCATCCGGCGGATTGCGCTGAGCACGATC GTGCCGGGCGCGACCGTGGACGGCCCGTCGATCTTCGAGGCCGACCTCGGCAACGAGATCGACAACATGGAAGGGCTCGA CGTCCATATCGACGCCGGCGGCGCGATCGTGCTGACGATGGTGTCGGACGACAATTTCTCGATGCTGCAGCGAACCCTGC TGCTGCAATTCACGCTGGAAGCCGACTAA
Upstream 100 bases:
>100_bases GCTCGCCGAGCTGTTCAGCGAGACCGCCACCCCGGCCGCGACACCGGGCCCGCGACGCCACCGTCTGCATTCGTGAGCGC TCTTGGGCTGAGATGAGCCG
Downstream 100 bases:
>100_bases CCCGCCGATCTTTACTTAGCGGCTCAGGCCGGCCGTGCCGCTGCTGCCCTGCTCGGCTTCGCCGGCTCGGCGGCGGTGGT GGTGGTCGATCGCGCCGCCT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 382; Mature: 382
Protein sequence:
>382_residues MNAPRGEAGKQSDHTATEDGRAAAAAQDFATTTRRHLLAGGLWLGGAATLAGFVPTLALAQTKPVEADELTPPAPRSIEV RARPIDHFDLRDRAHRQFGALQFRSGLILTSGFRGFGGLSALRLDPRGERFVAISDKATWFTGRIVYDGTALSGLADVEA APLLGPDGKPLRSRKWYDSESLAFDGGTAYVGFERVNQIVKFDFGRDGIRARGQPIAVPPALRKLPNNKGIESLVMVPKP HPLAGTLIALSERGLDAERNTIGFLIGGKSPGQFSVRRTENYDIADAALMHGGELLILERKFSWFEGVHIRIRRIALSTI VPGATVDGPSIFEADLGNEIDNMEGLDVHIDAGGAIVLTMVSDDNFSMLQRTLLLQFTLEAD
Sequences:
>Translated_382_residues MNAPRGEAGKQSDHTATEDGRAAAAAQDFATTTRRHLLAGGLWLGGAATLAGFVPTLALAQTKPVEADELTPPAPRSIEV RARPIDHFDLRDRAHRQFGALQFRSGLILTSGFRGFGGLSALRLDPRGERFVAISDKATWFTGRIVYDGTALSGLADVEA APLLGPDGKPLRSRKWYDSESLAFDGGTAYVGFERVNQIVKFDFGRDGIRARGQPIAVPPALRKLPNNKGIESLVMVPKP HPLAGTLIALSERGLDAERNTIGFLIGGKSPGQFSVRRTENYDIADAALMHGGELLILERKFSWFEGVHIRIRRIALSTI VPGATVDGPSIFEADLGNEIDNMEGLDVHIDAGGAIVLTMVSDDNFSMLQRTLLLQFTLEAD >Mature_382_residues MNAPRGEAGKQSDHTATEDGRAAAAAQDFATTTRRHLLAGGLWLGGAATLAGFVPTLALAQTKPVEADELTPPAPRSIEV RARPIDHFDLRDRAHRQFGALQFRSGLILTSGFRGFGGLSALRLDPRGERFVAISDKATWFTGRIVYDGTALSGLADVEA APLLGPDGKPLRSRKWYDSESLAFDGGTAYVGFERVNQIVKFDFGRDGIRARGQPIAVPPALRKLPNNKGIESLVMVPKP HPLAGTLIALSERGLDAERNTIGFLIGGKSPGQFSVRRTENYDIADAALMHGGELLILERKFSWFEGVHIRIRRIALSTI VPGATVDGPSIFEADLGNEIDNMEGLDVHIDAGGAIVLTMVSDDNFSMLQRTLLLQFTLEAD
Specific function: Unknown
COG id: COG4246
COG function: function code S; Uncharacterized protein conserved in bacteria
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 41217; Mature: 41217
Theoretical pI: Translated: 6.53; Mature: 6.53
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 1.6 %Met (Translated Protein) 1.6 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 1.6 %Met (Mature Protein) 1.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNAPRGEAGKQSDHTATEDGRAAAAAQDFATTTRRHLLAGGLWLGGAATLAGFVPTLALA CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCEEECHHHHHHHHHHHHHHH QTKPVEADELTPPAPRSIEVRARPIDHFDLRDRAHRQFGALQFRSGLILTSGFRGFGGLS CCCCCCCCCCCCCCCCCEEEEECCCCCCCHHHHHHHHHCCEEECCCEEEECCCCCCCCCE ALRLDPRGERFVAISDKATWFTGRIVYDGTALSGLADVEAAPLLGPDGKPLRSRKWYDSE EEEECCCCCEEEEEECCCEEEEEEEEECCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCC SLAFDGGTAYVGFERVNQIVKFDFGRDGIRARGQPIAVPPALRKLPNNKGIESLVMVPKP CEEECCCEEEEEHHHHHHHEEECCCCCCCCCCCCCEECCHHHHHCCCCCCCCEEEECCCC HPLAGTLIALSERGLDAERNTIGFLIGGKSPGQFSVRRTENYDIADAALMHGGELLILER CCCCEEEEEEECCCCCCCCCEEEEEEECCCCCCEEEEECCCCCHHHHHHHCCCEEEEEEE KFSWFEGVHIRIRRIALSTIVPGATVDGPSIFEADLGNEIDNMEGLDVHIDAGGAIVLTM CCCCCCCEEEEEEEEEHHHHCCCCCCCCCCEEEHHCCCCCCCCCCCEEEEECCCEEEEEE VSDDNFSMLQRTLLLQFTLEAD EECCCHHHHHHEEEEEEEEECC >Mature Secondary Structure MNAPRGEAGKQSDHTATEDGRAAAAAQDFATTTRRHLLAGGLWLGGAATLAGFVPTLALA CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCEEECHHHHHHHHHHHHHHH QTKPVEADELTPPAPRSIEVRARPIDHFDLRDRAHRQFGALQFRSGLILTSGFRGFGGLS CCCCCCCCCCCCCCCCCEEEEECCCCCCCHHHHHHHHHCCEEECCCEEEECCCCCCCCCE ALRLDPRGERFVAISDKATWFTGRIVYDGTALSGLADVEAAPLLGPDGKPLRSRKWYDSE EEEECCCCCEEEEEECCCEEEEEEEEECCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCC SLAFDGGTAYVGFERVNQIVKFDFGRDGIRARGQPIAVPPALRKLPNNKGIESLVMVPKP CEEECCCEEEEEHHHHHHHEEECCCCCCCCCCCCCEECCHHHHHCCCCCCCCEEEECCCC HPLAGTLIALSERGLDAERNTIGFLIGGKSPGQFSVRRTENYDIADAALMHGGELLILER CCCCEEEEEEECCCCCCCCCEEEEEEECCCCCCEEEEECCCCCHHHHHHHCCCEEEEEEE KFSWFEGVHIRIRRIALSTIVPGATVDGPSIFEADLGNEIDNMEGLDVHIDAGGAIVLTM CCCCCCCEEEEEEEEEHHHHCCCCCCCCCCEEEHHCCCCCCCCCCCEEEEECCCEEEEEE VSDDNFSMLQRTLLLQFTLEAD EECCCHHHHHHEEEEEEEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA