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The map label for this gene is ydeB [H]

Identifier: 192288919

GI number: 192288919

Start: 528629

End: 529465

Strand: Reverse

Name: ydeB [H]

Synonym: Rpal_0489

Alternate gene names: 192288919

Gene position: 529465-528629 (Counterclockwise)

Preceding gene: 192288920

Following gene: 192288916

Centisome position: 9.22

GC content: 66.91

Gene sequence:

>837_bases
ATGCCAACCAAGTCTGCGAAAACTCCCGCCCAGCCGGCGGCCTCCAAGCCCGCCGCAGCAACCAAGCCGGCGGCGAAGCC
TGCCAAGGCTGCCGTCGCTCCGAAGGCGGAGGTGAACGCCGAGGTCAAGACCGAGGTGAAGGCGCCGGTTGCCAAGGCGG
CGGCGAAGCCGGAAGTGAAGCAGCCTGTGGCGGCGGCAAAGCCGGCGGCCCCTGCGCCCGCGCGCGTCGAGGAGCCGAAG
AAGGCCGTCACCCAGCGTCAGGGCTTCAAGGCCAACGAATTCGTGGTCTATCCGGCCCACGGCGTCGGCCAGATCCTGGC
GATCGAGGAGCAGGAAATCGCGGGCGCCAAGCTTGAGTTGTTCGTCATCAACTTCATCAAGGACAAGATGACGCTGCGCG
TGCCCACCGCGAAGGTCGGCAATGTCGGCATGCGCAAGCTGTCCGATCCGGCGCTGGTGAAGAAGGCGTTGGAAACCCTG
AAGGGCCGTGCCCGCGTCAAGCGGACGATGTGGTCGCGCCGCGCGCAGGAATACGAAGCCAAGATCAACTCGGGCGACAT
CGTCGCGATCGCCGAGGTGGTCCGCGACCTGTACCGCTCGGAATCGCAGCCGGAGCAGTCCTACAGCGAACGGCAGCTCT
ATGAAGCCGCACTCGACCGCCTGTCGCGCGAGATCGCGGTGGTGCAGCACATCACCGAGACCGAAGCCGTCAAGGAAGTC
GAGAGCCAGCTCGCCAAGAGCCCGCGCCGCGGCGCCAAGGCCGAGGCGGAAGCCGAGGCCGATGCGGATCTCGATGGCGA
TTCCGACGACGAGGCGGTGACCGACGAGGCCGCGTAA

Upstream 100 bases:

>100_bases
GGCGAGCGCCACCAAACACGCTACCGCAAAGGGGTCTGCTGCAAAGGCTTCGGCCTCCAAAGCTCCGGCCTTCAAGTCCT
CGAAAATCAAAAGAAGTGAA

Downstream 100 bases:

>100_bases
GCGACCGCAGTCGGTTCGAAGACATCAAGGCCCGGCGATTCGCCGGGCCTTTTTCGTGGGCGCGAGGCTGTTGCGCGCGG
CGCGGCGCAGGGCTCGCTTG

Product: CarD family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 278; Mature: 277

Protein sequence:

>278_residues
MPTKSAKTPAQPAASKPAAATKPAAKPAKAAVAPKAEVNAEVKTEVKAPVAKAAAKPEVKQPVAAAKPAAPAPARVEEPK
KAVTQRQGFKANEFVVYPAHGVGQILAIEEQEIAGAKLELFVINFIKDKMTLRVPTAKVGNVGMRKLSDPALVKKALETL
KGRARVKRTMWSRRAQEYEAKINSGDIVAIAEVVRDLYRSESQPEQSYSERQLYEAALDRLSREIAVVQHITETEAVKEV
ESQLAKSPRRGAKAEAEAEADADLDGDSDDEAVTDEAA

Sequences:

>Translated_278_residues
MPTKSAKTPAQPAASKPAAATKPAAKPAKAAVAPKAEVNAEVKTEVKAPVAKAAAKPEVKQPVAAAKPAAPAPARVEEPK
KAVTQRQGFKANEFVVYPAHGVGQILAIEEQEIAGAKLELFVINFIKDKMTLRVPTAKVGNVGMRKLSDPALVKKALETL
KGRARVKRTMWSRRAQEYEAKINSGDIVAIAEVVRDLYRSESQPEQSYSERQLYEAALDRLSREIAVVQHITETEAVKEV
ESQLAKSPRRGAKAEAEAEADADLDGDSDDEAVTDEAA
>Mature_277_residues
PTKSAKTPAQPAASKPAAATKPAAKPAKAAVAPKAEVNAEVKTEVKAPVAKAAAKPEVKQPVAAAKPAAPAPARVEEPKK
AVTQRQGFKANEFVVYPAHGVGQILAIEEQEIAGAKLELFVINFIKDKMTLRVPTAKVGNVGMRKLSDPALVKKALETLK
GRARVKRTMWSRRAQEYEAKINSGDIVAIAEVVRDLYRSESQPEQSYSERQLYEAALDRLSREIAVVQHITETEAVKEVE
SQLAKSPRRGAKAEAEAEADADLDGDSDDEAVTDEAA

Specific function: Unknown

COG id: COG1329

COG function: function code K; Transcriptional regulators, similar to M. xanthus CarD

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003711 [H]

Pfam domain/function: PF02559 CarD_TRCF [H]

EC number: NA

Molecular weight: Translated: 29821; Mature: 29690

Theoretical pI: Translated: 9.62; Mature: 9.62

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
1.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
1.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPTKSAKTPAQPAASKPAAATKPAAKPAKAAVAPKAEVNAEVKTEVKAPVAKAAAKPEVK
CCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCHHCCCHHHHHHHHHHHHHHCCCHHH
QPVAAAKPAAPAPARVEEPKKAVTQRQGFKANEFVVYPAHGVGQILAIEEQEIAGAKLEL
CCHHHCCCCCCCCCCCCCHHHHHHHHCCCCCCCEEEECCCCCCEEEEECHHHHCCCEEEE
FVINFIKDKMTLRVPTAKVGNVGMRKLSDPALVKKALETLKGRARVKRTMWSRRAQEYEA
HHHHHHHCCEEEECCCCHHCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
KINSGDIVAIAEVVRDLYRSESQPEQSYSERQLYEAALDRLSREIAVVQHITETEAVKEV
HCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ESQLAKSPRRGAKAEAEAEADADLDGDSDDEAVTDEAA
HHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure 
PTKSAKTPAQPAASKPAAATKPAAKPAKAAVAPKAEVNAEVKTEVKAPVAKAAAKPEVK
CCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCHHCCCHHHHHHHHHHHHHHCCCHHH
QPVAAAKPAAPAPARVEEPKKAVTQRQGFKANEFVVYPAHGVGQILAIEEQEIAGAKLEL
CCHHHCCCCCCCCCCCCCHHHHHHHHCCCCCCCEEEECCCCCCEEEEECHHHHCCCEEEE
FVINFIKDKMTLRVPTAKVGNVGMRKLSDPALVKKALETLKGRARVKRTMWSRRAQEYEA
HHHHHHHCCEEEECCCCHHCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
KINSGDIVAIAEVVRDLYRSESQPEQSYSERQLYEAALDRLSREIAVVQHITETEAVKEV
HCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ESQLAKSPRRGAKAEAEAEADADLDGDSDDEAVTDEAA
HHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]