BacMap

Definition	Rhodopseudomonas palustris TIE-1 chromosome, complete genome.
Accession	NC_011004
Length	5,744,041

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The map label for this gene is gra-orf6 [H]

Identifier: 192288910

GI number: 192288910

Start: 518640

End: 519422

Strand: Reverse

Name: gra-orf6 [H]

Synonym: Rpal_0480

Alternate gene names: 192288910

Gene position: 519422-518640 (Counterclockwise)

Preceding gene: 192288914

Following gene: 192288905

Centisome position: 9.04

GC content: 65.77

Gene sequence:

>783_bases
ATGTCAGACGGACTGAACGTAATTGTCACCGGATCGGCCTCAGGCCTCGGCGCCGCGACCGCCAAGATCCTCGCCAAGGA
CGGCGCGCGCCTGGTGATCAACTACGCATCGAGCAAGGACGACGCCGAAAAGACCGCCGAAGAGTGCCGCAAGCTCGGCG
CCGCCGAAGTGATCGTGGTGCAGGGCGACGTCGCCAAGGACGAGGATTGCAAACGCATCGTCGAGGCCGCGGCCCCCTGG
GGCAAGCTCGACGCGCTGGTCAACAATGCCGGCACCACCAAGCACGTGGCGCATCATCTGCTCGATCAATTATCGGCCGA
CGACTTCCAGCGCATCTACGCGATCAACACCGTCGGGCCGTACCAGATGGTTCGCGCGGCGCGCGAGCTGCTCGTCGCCG
GCGCCAAGGCGGCCGGCCGGGCTTCTGCAGTGGTCAACGTCTCATCGGTCGCGGGAATCAGCGGTATCGGCTCGTCGATC
GCCTATGCGGCCAGCAAGGGCGCGCTCAATACTATGACACTGTCGCTGTCGCGCGCGCTGGCGCCGAACATCCGCGTCAA
CGCGATCTGCCCCGGCTACATCGACACGCCTTGGTTCACCAAAGGCCGCGGCGCCGAGGAAGCCAAGCAGGTGCGCGACA
TGGTGGTGTCGCGCGTGCCGCTGAAGATCGCCTCGACCGCCGAAGACATCGCCGAACTGGTGTGCTTCCTGGCGACGCCG
AAATCGAGCAGCATGACCGGCGAACTGGTGCGGATGGACGCCGGCATGCATCTGGCCGGCTGA

Upstream 100 bases:

>100_bases
GCATATTCCGCAACATGGGCTTTGCCGACTTGCCCTCGATATCGCAACCGATATGGTTGCAGCCACGCGGCGAAGCCGGT
TCGATGCAAAGGGAGTGAAG

Downstream 100 bases:

>100_bases
CGTCACATCCGCAAGCAGCAGCGAGCGGCCCGGCGAACCGGGCCGCGGCAGCCTCAGCGCGGATCATACGGGTAGCGATT
ACCGGGATCGGAGATCACCC

Product: short-chain dehydrogenase/reductase SDR

Products: 3-oxoacyl-[acyl-carrier protein]; NADPH; H+

Alternate protein names: ORF6 [H]

Number of amino acids: Translated: 260; Mature: 259

Protein sequence:

>260_residues
MSDGLNVIVTGSASGLGAATAKILAKDGARLVINYASSKDDAEKTAEECRKLGAAEVIVVQGDVAKDEDCKRIVEAAAPW
GKLDALVNNAGTTKHVAHHLLDQLSADDFQRIYAINTVGPYQMVRAARELLVAGAKAAGRASAVVNVSSVAGISGIGSSI
AYAASKGALNTMTLSLSRALAPNIRVNAICPGYIDTPWFTKGRGAEEAKQVRDMVVSRVPLKIASTAEDIAELVCFLATP
KSSSMTGELVRMDAGMHLAG

Sequences:

>Translated_260_residues
MSDGLNVIVTGSASGLGAATAKILAKDGARLVINYASSKDDAEKTAEECRKLGAAEVIVVQGDVAKDEDCKRIVEAAAPW
GKLDALVNNAGTTKHVAHHLLDQLSADDFQRIYAINTVGPYQMVRAARELLVAGAKAAGRASAVVNVSSVAGISGIGSSI
AYAASKGALNTMTLSLSRALAPNIRVNAICPGYIDTPWFTKGRGAEEAKQVRDMVVSRVPLKIASTAEDIAELVCFLATP
KSSSMTGELVRMDAGMHLAG
>Mature_259_residues
SDGLNVIVTGSASGLGAATAKILAKDGARLVINYASSKDDAEKTAEECRKLGAAEVIVVQGDVAKDEDCKRIVEAAAPWG
KLDALVNNAGTTKHVAHHLLDQLSADDFQRIYAINTVGPYQMVRAARELLVAGAKAAGRASAVVNVSSVAGISGIGSSIA
YAASKGALNTMTLSLSRALAPNIRVNAICPGYIDTPWFTKGRGAEEAKQVRDMVVSRVPLKIASTAEDIAELVCFLATPK
SSSMTGELVRMDAGMHLAG

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]

Homologues:

Organism=Homo sapiens, GI4758504, Length=263, Percent_Identity=30.7984790874525, Blast_Score=98, Evalue=7e-21,
Organism=Homo sapiens, GI83715985, Length=262, Percent_Identity=29.0076335877863, Blast_Score=85, Evalue=5e-17,
Organism=Homo sapiens, GI15277342, Length=263, Percent_Identity=28.5171102661597, Blast_Score=85, Evalue=8e-17,
Organism=Homo sapiens, GI59889578, Length=182, Percent_Identity=32.967032967033, Blast_Score=81, Evalue=9e-16,
Organism=Homo sapiens, GI7705925, Length=254, Percent_Identity=27.5590551181102, Blast_Score=78, Evalue=1e-14,
Organism=Homo sapiens, GI5031737, Length=245, Percent_Identity=31.8367346938775, Blast_Score=77, Evalue=1e-14,
Organism=Homo sapiens, GI40254992, Length=252, Percent_Identity=27.3809523809524, Blast_Score=76, Evalue=3e-14,
Organism=Homo sapiens, GI19923817, Length=261, Percent_Identity=26.4367816091954, Blast_Score=75, Evalue=5e-14,
Organism=Homo sapiens, GI32483357, Length=260, Percent_Identity=31.1538461538462, Blast_Score=74, Evalue=1e-13,
Organism=Homo sapiens, GI66933014, Length=261, Percent_Identity=29.5019157088123, Blast_Score=74, Evalue=1e-13,
Organism=Homo sapiens, GI7706318, Length=241, Percent_Identity=28.2157676348548, Blast_Score=67, Evalue=2e-11,
Organism=Homo sapiens, GI31542939, Length=221, Percent_Identity=24.8868778280543, Blast_Score=66, Evalue=3e-11,
Organism=Homo sapiens, GI33667109, Length=197, Percent_Identity=33.502538071066, Blast_Score=66, Evalue=3e-11,
Organism=Homo sapiens, GI210032110, Length=201, Percent_Identity=28.3582089552239, Blast_Score=65, Evalue=7e-11,
Organism=Escherichia coli, GI2367175, Length=251, Percent_Identity=32.2709163346614, Blast_Score=106, Evalue=2e-24,
Organism=Escherichia coli, GI2367365, Length=257, Percent_Identity=33.852140077821, Blast_Score=97, Evalue=8e-22,
Organism=Escherichia coli, GI1787335, Length=252, Percent_Identity=29.3650793650794, Blast_Score=91, Evalue=6e-20,
Organism=Escherichia coli, GI87082160, Length=254, Percent_Identity=31.1023622047244, Blast_Score=86, Evalue=2e-18,
Organism=Escherichia coli, GI1790717, Length=257, Percent_Identity=29.1828793774319, Blast_Score=86, Evalue=2e-18,
Organism=Escherichia coli, GI1789378, Length=260, Percent_Identity=28.8461538461538, Blast_Score=85, Evalue=4e-18,
Organism=Escherichia coli, GI87082100, Length=261, Percent_Identity=31.4176245210728, Blast_Score=85, Evalue=5e-18,
Organism=Escherichia coli, GI1788459, Length=261, Percent_Identity=28.3524904214559, Blast_Score=85, Evalue=6e-18,
Organism=Escherichia coli, GI1786812, Length=263, Percent_Identity=30.0380228136882, Blast_Score=82, Evalue=3e-17,
Organism=Escherichia coli, GI1789208, Length=251, Percent_Identity=26.6932270916335, Blast_Score=69, Evalue=2e-13,
Organism=Escherichia coli, GI1787545, Length=262, Percent_Identity=25.5725190839695, Blast_Score=68, Evalue=6e-13,
Organism=Escherichia coli, GI1787905, Length=258, Percent_Identity=24.4186046511628, Blast_Score=66, Evalue=3e-12,
Organism=Escherichia coli, GI1787891, Length=144, Percent_Identity=33.3333333333333, Blast_Score=65, Evalue=5e-12,
Organism=Caenorhabditis elegans, GI17544670, Length=265, Percent_Identity=31.6981132075472, Blast_Score=104, Evalue=6e-23,
Organism=Caenorhabditis elegans, GI72000259, Length=269, Percent_Identity=34.2007434944238, Blast_Score=99, Evalue=1e-21,
Organism=Caenorhabditis elegans, GI17563726, Length=264, Percent_Identity=32.5757575757576, Blast_Score=98, Evalue=4e-21,
Organism=Caenorhabditis elegans, GI71994600, Length=260, Percent_Identity=30.7692307692308, Blast_Score=98, Evalue=5e-21,
Organism=Caenorhabditis elegans, GI17555706, Length=254, Percent_Identity=35.8267716535433, Blast_Score=97, Evalue=7e-21,
Organism=Caenorhabditis elegans, GI17538182, Length=269, Percent_Identity=30.4832713754647, Blast_Score=97, Evalue=8e-21,
Organism=Caenorhabditis elegans, GI17560332, Length=268, Percent_Identity=31.7164179104478, Blast_Score=96, Evalue=2e-20,
Organism=Caenorhabditis elegans, GI71994604, Length=259, Percent_Identity=31.2741312741313, Blast_Score=91, Evalue=8e-19,
Organism=Caenorhabditis elegans, GI17562910, Length=261, Percent_Identity=29.5019157088123, Blast_Score=90, Evalue=1e-18,
Organism=Caenorhabditis elegans, GI115534694, Length=252, Percent_Identity=28.5714285714286, Blast_Score=89, Evalue=2e-18,
Organism=Caenorhabditis elegans, GI17531453, Length=262, Percent_Identity=31.2977099236641, Blast_Score=86, Evalue=1e-17,
Organism=Caenorhabditis elegans, GI17562990, Length=265, Percent_Identity=30.9433962264151, Blast_Score=86, Evalue=2e-17,
Organism=Caenorhabditis elegans, GI17561402, Length=258, Percent_Identity=30.6201550387597, Blast_Score=85, Evalue=3e-17,
Organism=Caenorhabditis elegans, GI17562906, Length=263, Percent_Identity=33.4600760456274, Blast_Score=85, Evalue=3e-17,
Organism=Caenorhabditis elegans, GI17560150, Length=266, Percent_Identity=31.203007518797, Blast_Score=84, Evalue=7e-17,
Organism=Caenorhabditis elegans, GI17562904, Length=265, Percent_Identity=31.6981132075472, Blast_Score=83, Evalue=1e-16,
Organism=Caenorhabditis elegans, GI25147288, Length=254, Percent_Identity=29.1338582677165, Blast_Score=82, Evalue=2e-16,
Organism=Caenorhabditis elegans, GI17560676, Length=255, Percent_Identity=30.1960784313725, Blast_Score=81, Evalue=5e-16,
Organism=Caenorhabditis elegans, GI17562908, Length=264, Percent_Identity=31.8181818181818, Blast_Score=81, Evalue=6e-16,
Organism=Caenorhabditis elegans, GI17551412, Length=267, Percent_Identity=29.9625468164794, Blast_Score=80, Evalue=1e-15,
Organism=Caenorhabditis elegans, GI17538486, Length=265, Percent_Identity=29.4339622641509, Blast_Score=80, Evalue=1e-15,
Organism=Caenorhabditis elegans, GI193204405, Length=264, Percent_Identity=29.1666666666667, Blast_Score=76, Evalue=1e-14,
Organism=Caenorhabditis elegans, GI17560220, Length=269, Percent_Identity=29.7397769516729, Blast_Score=74, Evalue=5e-14,
Organism=Caenorhabditis elegans, GI17538480, Length=264, Percent_Identity=28.4090909090909, Blast_Score=73, Evalue=1e-13,
Organism=Caenorhabditis elegans, GI17559104, Length=267, Percent_Identity=28.8389513108614, Blast_Score=72, Evalue=3e-13,
Organism=Caenorhabditis elegans, GI32563809, Length=198, Percent_Identity=28.7878787878788, Blast_Score=69, Evalue=2e-12,
Organism=Caenorhabditis elegans, GI17507613, Length=198, Percent_Identity=28.7878787878788, Blast_Score=69, Evalue=3e-12,
Organism=Caenorhabditis elegans, GI17508651, Length=250, Percent_Identity=27.2, Blast_Score=65, Evalue=3e-11,
Organism=Caenorhabditis elegans, GI17565030, Length=269, Percent_Identity=27.1375464684015, Blast_Score=64, Evalue=9e-11,
Organism=Saccharomyces cerevisiae, GI6323882, Length=248, Percent_Identity=28.6290322580645, Blast_Score=77, Evalue=4e-15,
Organism=Saccharomyces cerevisiae, GI6322861, Length=195, Percent_Identity=28.2051282051282, Blast_Score=64, Evalue=2e-11,
Organism=Drosophila melanogaster, GI17737361, Length=266, Percent_Identity=34.2105263157895, Blast_Score=110, Evalue=1e-24,
Organism=Drosophila melanogaster, GI24644339, Length=254, Percent_Identity=33.4645669291339, Blast_Score=107, Evalue=7e-24,
Organism=Drosophila melanogaster, GI23397609, Length=259, Percent_Identity=33.5907335907336, Blast_Score=107, Evalue=7e-24,
Organism=Drosophila melanogaster, GI21357041, Length=255, Percent_Identity=32.9411764705882, Blast_Score=105, Evalue=2e-23,
Organism=Drosophila melanogaster, GI28571526, Length=255, Percent_Identity=33.7254901960784, Blast_Score=103, Evalue=9e-23,
Organism=Drosophila melanogaster, GI24639444, Length=255, Percent_Identity=31.3725490196078, Blast_Score=100, Evalue=1e-21,
Organism=Drosophila melanogaster, GI21355319, Length=251, Percent_Identity=32.2709163346614, Blast_Score=97, Evalue=7e-21,
Organism=Drosophila melanogaster, GI24643142, Length=250, Percent_Identity=26.4, Blast_Score=75, Evalue=4e-14,
Organism=Drosophila melanogaster, GI24580925, Length=210, Percent_Identity=28.5714285714286, Blast_Score=67, Evalue=1e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002198
- InterPro:   IPR002347
- InterPro:   IPR016040 [H]

Pfam domain/function: PF00106 adh_short [H]

EC number: 1.1.1.100

Molecular weight: Translated: 26995; Mature: 26864

Theoretical pI: Translated: 7.96; Mature: 7.96

Prosite motif: PS00061 ADH_SHORT

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSDGLNVIVTGSASGLGAATAKILAKDGARLVINYASSKDDAEKTAEECRKLGAAEVIVV
CCCCCEEEEECCCCCCHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHCCCCEEEEE
QGDVAKDEDCKRIVEAAAPWGKLDALVNNAGTTKHVAHHLLDQLSADDFQRIYAINTVGP
ECCCCCCHHHHHHHHHHCCCHHHHHHHCCCCCHHHHHHHHHHHHCHHHHHHEEEECCCCH
YQMVRAARELLVAGAKAAGRASAVVNVSSVAGISGIGSSIAYAASKGALNTMTLSLSRAL
HHHHHHHHHHHHHCCCCCCCHHHEEEHHHHCCCHHCCHHHHHHHCCCCCHHHHHHHHHHH
APNIRVNAICPGYIDTPWFTKGRGAEEAKQVRDMVVSRVPLKIASTAEDIAELVCFLATP
CCCCEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCC
KSSSMTGELVRMDAGMHLAG
CCCCCCCHHEEECCCCCCCC
>Mature Secondary Structure 
SDGLNVIVTGSASGLGAATAKILAKDGARLVINYASSKDDAEKTAEECRKLGAAEVIVV
CCCCEEEEECCCCCCHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHCCCCEEEEE
QGDVAKDEDCKRIVEAAAPWGKLDALVNNAGTTKHVAHHLLDQLSADDFQRIYAINTVGP
ECCCCCCHHHHHHHHHHCCCHHHHHHHCCCCCHHHHHHHHHHHHCHHHHHHEEEECCCCH
YQMVRAARELLVAGAKAAGRASAVVNVSSVAGISGIGSSIAYAASKGALNTMTLSLSRAL
HHHHHHHHHHHHHCCCCCCCHHHEEEHHHHCCCHHCCHHHHHHHCCCCCHHHHHHHHHHH
APNIRVNAICPGYIDTPWFTKGRGAEEAKQVRDMVVSRVPLKIASTAEDIAELVCFLATP
CCCCEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCC
KSSSMTGELVRMDAGMHLAG
CCCCCCCHHEEECCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: (3R)-3-hydroxyacyl-[acyl-carrier protein]; NADP+

Specific reaction: (3R)-3-hydroxyacyl-[acyl-carrier protein] + NADP+ = 3-oxoacyl-[acyl-carrier protein] + NADPH + H+

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 2583128; 9831526 [H]