| Definition | Rhodopseudomonas palustris TIE-1 chromosome, complete genome. |
|---|---|
| Accession | NC_011004 |
| Length | 5,744,041 |
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The map label for this gene is 192288914
Identifier: 192288914
GI number: 192288914
Start: 522919
End: 523683
Strand: Reverse
Name: 192288914
Synonym: Rpal_0484
Alternate gene names: NA
Gene position: 523683-522919 (Counterclockwise)
Preceding gene: 192288915
Following gene: 192288910
Centisome position: 9.12
GC content: 67.06
Gene sequence:
>765_bases ATGGCGCCGTTCCTTCGCCTGCGCCAGATCTGCCTCGTCACTGAGCCGATCGAGCCCGCCGCCTCGCGCATTGCGACGAT CATGGGACTCAACATCTGCTACCGCGATCCCCACGTCGGCAAATACGGCCTGGAGAATGTCCTGCTGCCGGTCGATGCGA CGCTTCTGGAAATCGTGGCACCGACCCAGCCCGGCACCGCGGCCGGCCGTTTCCTGGAGAAGACCCAAGGCCGCGGCGGC TACATGGCGATCTTCTGTTGCGACGATCCGGATGCCCGCGGCCGTCACGCCGCGAGCCTCGGGGTTCGTACCGCCAATGT GATCGACCACGCCCCGTATCACGGCGTGCAGCTTCACCCGCGCGACTGCCGGGCTGCCTTCATCGAGCTCAACCACACCG CAGGCAGCGACAACATCCGCGGCCCCTACCCACCGGCCGGCCCCGACTGGGCAAAGGCGATCCGCACCGACACCACCCAG GCGCTGACCGCAGTCGAGATGCAAAGTCCCGACCCAGCCGATCTCGCCGCGCATTGGGGCCGGATTCTCGAACTACCGGT CGAAACGGATGCAGATGGCGTCGCCGAACTCCGCCTGCCGAACGCCACGTTCCGGTTCGTGCAAGGCGCGAGCGAAGCAA TGACGGCGCTGACGTTCAAAGTGACAGCTCCCGAGACGGTCCGCGCAGCCGCGCAGGCGCAGGGCGTGCCGCTCACCGCC AACGGCTTCCGCCTGGCAGGCGTCGAGTTTAGGCTGACCACCTAA
Upstream 100 bases:
>100_bases AGGCGCTACATCACTCGCGCTGCGCTGAGACTGCCGACCACAAGGAAGCCGCTGCCGCCTTCGTCGAGAAGCGCGCGCCG GTGTTCCAGGGCCGCTGACG
Downstream 100 bases:
>100_bases CCACGCGTCATTCTGGGGCGCTCGCATAGCGAGCGAACCCGGAATCTCTGACGTCCAGCGGACAGTAGCAACAATTTCGA GATTCCGGGTTCGCGCTACG
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 254; Mature: 253
Protein sequence:
>254_residues MAPFLRLRQICLVTEPIEPAASRIATIMGLNICYRDPHVGKYGLENVLLPVDATLLEIVAPTQPGTAAGRFLEKTQGRGG YMAIFCCDDPDARGRHAASLGVRTANVIDHAPYHGVQLHPRDCRAAFIELNHTAGSDNIRGPYPPAGPDWAKAIRTDTTQ ALTAVEMQSPDPADLAAHWGRILELPVETDADGVAELRLPNATFRFVQGASEAMTALTFKVTAPETVRAAAQAQGVPLTA NGFRLAGVEFRLTT
Sequences:
>Translated_254_residues MAPFLRLRQICLVTEPIEPAASRIATIMGLNICYRDPHVGKYGLENVLLPVDATLLEIVAPTQPGTAAGRFLEKTQGRGG YMAIFCCDDPDARGRHAASLGVRTANVIDHAPYHGVQLHPRDCRAAFIELNHTAGSDNIRGPYPPAGPDWAKAIRTDTTQ ALTAVEMQSPDPADLAAHWGRILELPVETDADGVAELRLPNATFRFVQGASEAMTALTFKVTAPETVRAAAQAQGVPLTA NGFRLAGVEFRLTT >Mature_253_residues APFLRLRQICLVTEPIEPAASRIATIMGLNICYRDPHVGKYGLENVLLPVDATLLEIVAPTQPGTAAGRFLEKTQGRGGY MAIFCCDDPDARGRHAASLGVRTANVIDHAPYHGVQLHPRDCRAAFIELNHTAGSDNIRGPYPPAGPDWAKAIRTDTTQA LTAVEMQSPDPADLAAHWGRILELPVETDADGVAELRLPNATFRFVQGASEAMTALTFKVTAPETVRAAAQAQGVPLTAN GFRLAGVEFRLTT
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 27274; Mature: 27143
Theoretical pI: Translated: 6.39; Mature: 6.39
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.0 %Cys (Translated Protein) 2.0 %Met (Translated Protein) 3.9 %Cys+Met (Translated Protein) 2.0 %Cys (Mature Protein) 1.6 %Met (Mature Protein) 3.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAPFLRLRQICLVTEPIEPAASRIATIMGLNICYRDPHVGKYGLENVLLPVDATLLEIVA CCHHHHHHHHHHCCCCCCHHHHHHHHHHHCEEEECCCCCCCCCCCCEEECCCHHEEEEEC PTQPGTAAGRFLEKTQGRGGYMAIFCCDDPDARGRHAASLGVRTANVIDHAPYHGVQLHP CCCCCHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCHHHHCCEEHHHHHCCCCCCEEECC RDCRAAFIELNHTAGSDNIRGPYPPAGPDWAKAIRTDTTQALTAVEMQSPDPADLAAHWG CCCEEEEEEEECCCCCCCCCCCCCCCCCHHHHHHHCCCHHHEEEEECCCCCHHHHHHHCC RILELPVETDADGVAELRLPNATFRFVQGASEAMTALTFKVTAPETVRAAAQAQGVPLTA CEEEECCCCCCCCEEEEECCCCHHHHHHCHHHHEEEEEEEEECCHHHHHHHHHCCCCEEC NGFRLAGVEFRLTT CCEEEEEEEEEECC >Mature Secondary Structure APFLRLRQICLVTEPIEPAASRIATIMGLNICYRDPHVGKYGLENVLLPVDATLLEIVA CHHHHHHHHHHCCCCCCHHHHHHHHHHHCEEEECCCCCCCCCCCCEEECCCHHEEEEEC PTQPGTAAGRFLEKTQGRGGYMAIFCCDDPDARGRHAASLGVRTANVIDHAPYHGVQLHP CCCCCHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCHHHHCCEEHHHHHCCCCCCEEECC RDCRAAFIELNHTAGSDNIRGPYPPAGPDWAKAIRTDTTQALTAVEMQSPDPADLAAHWG CCCEEEEEEEECCCCCCCCCCCCCCCCCHHHHHHHCCCHHHEEEEECCCCCHHHHHHHCC RILELPVETDADGVAELRLPNATFRFVQGASEAMTALTFKVTAPETVRAAAQAQGVPLTA CEEEECCCCCCCCEEEEECCCCHHHHHHCHHHHEEEEEEEEECCHHHHHHHHHCCCCEEC NGFRLAGVEFRLTT CCEEEEEEEEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA