| Definition | Rhodopseudomonas palustris TIE-1 chromosome, complete genome. |
|---|---|
| Accession | NC_011004 |
| Length | 5,744,041 |
Click here to switch to the map view.
The map label for this gene is 192288852
Identifier: 192288852
GI number: 192288852
Start: 452323
End: 452823
Strand: Reverse
Name: 192288852
Synonym: Rpal_0421
Alternate gene names: NA
Gene position: 452823-452323 (Counterclockwise)
Preceding gene: 192288853
Following gene: 192288851
Centisome position: 7.88
GC content: 65.67
Gene sequence:
>501_bases ATGACGAGCGAGGAGTTCGCGCGGCTGCTGGAGAGCCTGACCCGCGCGGCGGAATCCGGCGACGGCGCACGGTTCGCCGG CCATTTCACCGAAGACGCGACGTATCACGACTACATCTACGGCCCGCACATCGGCCGCGCCGAGATCGCCACGATGATGC AGGATCTGTTTCATCGCGACGCCGCCGATTATCGCTGGGAGATGTTCGACCCGGTCTGCAACGGCGACCTCGGCTACGCT TGGTCGTTGTCTAGCTTCACCTCCACCGTTCCCGAGTTCAAAGGCCAGCGCGTGGTGATCGACGGCATGAGCCGGTTCAT CCTGCGCGGCGAGCTGATCGCGGAGTATCGCGAGTCGGTCAATGGCGGCGTGGCAATGGCGCAGCTCGGCGTCGCGCCCG AGCGGATGGCGAAGGTCTTCCGCAAATGGAGCGGCTGGCTGCAGCATCGCCCCGAAACCCAGGACTATCTGGCCCGGCCC AAAGGCACGCGCCGCACCTGA
Upstream 100 bases:
>100_bases CGGGCTCCCCGCCGCAAATGCGCTTCCCTCGCGACCGCGGCGATTGCTAAGCTCTTTGCCAAGCTTCGGCAGCCATGACC GAGGCAGCAAGGGAGTGAGC
Downstream 100 bases:
>100_bases GATCTGTCGCCCACGGCAGGCGGAGACAAGCACGGACGAACTCCGTGCACCCAACAACAATCAACAAAGGGAGAAACGCC GTTGAGCTATCAGGACATCC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 166; Mature: 165
Protein sequence:
>166_residues MTSEEFARLLESLTRAAESGDGARFAGHFTEDATYHDYIYGPHIGRAEIATMMQDLFHRDAADYRWEMFDPVCNGDLGYA WSLSSFTSTVPEFKGQRVVIDGMSRFILRGELIAEYRESVNGGVAMAQLGVAPERMAKVFRKWSGWLQHRPETQDYLARP KGTRRT
Sequences:
>Translated_166_residues MTSEEFARLLESLTRAAESGDGARFAGHFTEDATYHDYIYGPHIGRAEIATMMQDLFHRDAADYRWEMFDPVCNGDLGYA WSLSSFTSTVPEFKGQRVVIDGMSRFILRGELIAEYRESVNGGVAMAQLGVAPERMAKVFRKWSGWLQHRPETQDYLARP KGTRRT >Mature_165_residues TSEEFARLLESLTRAAESGDGARFAGHFTEDATYHDYIYGPHIGRAEIATMMQDLFHRDAADYRWEMFDPVCNGDLGYAW SLSSFTSTVPEFKGQRVVIDGMSRFILRGELIAEYRESVNGGVAMAQLGVAPERMAKVFRKWSGWLQHRPETQDYLARPK GTRRT
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 18892; Mature: 18761
Theoretical pI: Translated: 6.36; Mature: 6.36
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 4.2 %Met (Translated Protein) 4.8 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 3.6 %Met (Mature Protein) 4.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTSEEFARLLESLTRAAESGDGARFAGHFTEDATYHDYIYGPHIGRAEIATMMQDLFHRD CCHHHHHHHHHHHHHHHHCCCCCEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCC AADYRWEMFDPVCNGDLGYAWSLSSFTSTVPEFKGQRVVIDGMSRFILRGELIAEYRESV CHHHHHHHHCCCCCCCCCCEEEHHHHHHHHHHHCCCEEEEHHHHHHHHHHHHHHHHHHHH NGGVAMAQLGVAPERMAKVFRKWSGWLQHRPETQDYLARPKGTRRT CCCHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCHHHHHCCCCCCCC >Mature Secondary Structure TSEEFARLLESLTRAAESGDGARFAGHFTEDATYHDYIYGPHIGRAEIATMMQDLFHRD CHHHHHHHHHHHHHHHHCCCCCEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCC AADYRWEMFDPVCNGDLGYAWSLSSFTSTVPEFKGQRVVIDGMSRFILRGELIAEYRESV CHHHHHHHHCCCCCCCCCCEEEHHHHHHHHHHHCCCEEEEHHHHHHHHHHHHHHHHHHHH NGGVAMAQLGVAPERMAKVFRKWSGWLQHRPETQDYLARPKGTRRT CCCHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCHHHHHCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA