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The map label for this gene is rimM [H]

Identifier: 192288675

GI number: 192288675

Start: 260621

End: 261151

Strand: Reverse

Name: rimM [H]

Synonym: Rpal_0244

Alternate gene names: 192288675

Gene position: 261151-260621 (Counterclockwise)

Preceding gene: 192288676

Following gene: 192288674

Centisome position: 4.55

GC content: 67.98

Gene sequence:

>531_bases
ATGCCGTCCGGGCTCATTTGCGTCGCCCGGATCGGCGCGCCGCATGGCGTGCGCGGTGCGGTGCGGCTGTGGAGCTTCAC
CGCCGACCCGTTCGCCGTCAGCGACTACGGTCCGCTTGTGACCAAGGACGGCGCGCGCCAGTTCGAAATCGCGAGCGCGC
GCGAGGCCAAGAGCCATCTGGTGGTGACGCTGAAGGGCGTCGCCACGCGCGATGAGGCCGAACGGCTCAACGGCGTCGAG
CTCTATGTGGCACGCGACAAGCTGCCGCCGACCGAGGCCGACGAGTACTACCACGCCGACCTGATCGGGCTCGCCGCCGT
CACCACGGCTGGCGACGCGCTCGGCAAGGTGGTGGCGATCCACAATTTCGGCGCCGGCGATATCATCGAAATCGCGCCGC
CGTCAGGTCCGACGCTGCTGCTGCCATTCACCAATGCGGTGGTGCCGACTGTCGATCTCGCTGCCGGCCAGGTGGTGATC
GAACTGCCGAACGAGATCGAAGGCGACACGCCGAACCATCCGGAGGCGTGA

Upstream 100 bases:

>100_bases
CACCGCCGGTGTCCGCAAGCGTGAAGCCCGCAACAACCCCGAGAAGGCGGTGCCGCGCAAGGAGCGCAAGGCCGCCGACG
GCAAGTAAGCGGGGCGATTG

Downstream 100 bases:

>100_bases
AGGCTCGTCGATCGGTCCGGCCGAACGCTGCTACAATCTACGTTGTCGTCGCCGGGCTCGATCCGGCGATCCATCGTCTC
GTGAAGATGATGGATGCCCG

Product: 16S rRNA-processing protein RimM

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 176; Mature: 175

Protein sequence:

>176_residues
MPSGLICVARIGAPHGVRGAVRLWSFTADPFAVSDYGPLVTKDGARQFEIASAREAKSHLVVTLKGVATRDEAERLNGVE
LYVARDKLPPTEADEYYHADLIGLAAVTTAGDALGKVVAIHNFGAGDIIEIAPPSGPTLLLPFTNAVVPTVDLAAGQVVI
ELPNEIEGDTPNHPEA

Sequences:

>Translated_176_residues
MPSGLICVARIGAPHGVRGAVRLWSFTADPFAVSDYGPLVTKDGARQFEIASAREAKSHLVVTLKGVATRDEAERLNGVE
LYVARDKLPPTEADEYYHADLIGLAAVTTAGDALGKVVAIHNFGAGDIIEIAPPSGPTLLLPFTNAVVPTVDLAAGQVVI
ELPNEIEGDTPNHPEA
>Mature_175_residues
PSGLICVARIGAPHGVRGAVRLWSFTADPFAVSDYGPLVTKDGARQFEIASAREAKSHLVVTLKGVATRDEAERLNGVEL
YVARDKLPPTEADEYYHADLIGLAAVTTAGDALGKVVAIHNFGAGDIIEIAPPSGPTLLLPFTNAVVPTVDLAAGQVVIE
LPNEIEGDTPNHPEA

Specific function: An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after rbfA dur

COG id: COG0806

COG function: function code J; RimM protein, required for 16S rRNA processing

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PRC barrel domain [H]

Homologues:

Organism=Escherichia coli, GI87082136, Length=164, Percent_Identity=32.3170731707317, Blast_Score=91, Evalue=3e-20,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011961
- InterPro:   IPR007903
- InterPro:   IPR011033
- InterPro:   IPR002676
- InterPro:   IPR009000 [H]

Pfam domain/function: PF05239 PRC; PF01782 RimM [H]

EC number: NA

Molecular weight: Translated: 18456; Mature: 18325

Theoretical pI: Translated: 4.57; Mature: 4.57

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
0.6 %Met     (Translated Protein)
1.1 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
0.0 %Met     (Mature Protein)
0.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPSGLICVARIGAPHGVRGAVRLWSFTADPFAVSDYGPLVTKDGARQFEIASAREAKSHL
CCCCEEEEEEECCCCCCCCEEEEEEECCCCEEECCCCCEEECCCCCEEEECCCCCCCCEE
VVTLKGVATRDEAERLNGVELYVARDKLPPTEADEYYHADLIGLAAVTTAGDALGKVVAI
EEEEECCCCCCHHHHCCCEEEEEEECCCCCCCCCCEEHHHHHHHHHHHHCCHHHEEEEEE
HNFGAGDIIEIAPPSGPTLLLPFTNAVVPTVDLAAGQVVIELPNEIEGDTPNHPEA
EECCCCCEEEECCCCCCEEEEEECCCCCCEEECCCCEEEEECCCCCCCCCCCCCCC
>Mature Secondary Structure 
PSGLICVARIGAPHGVRGAVRLWSFTADPFAVSDYGPLVTKDGARQFEIASAREAKSHL
CCCEEEEEEECCCCCCCCEEEEEEECCCCEEECCCCCEEECCCCCEEEECCCCCCCCEE
VVTLKGVATRDEAERLNGVELYVARDKLPPTEADEYYHADLIGLAAVTTAGDALGKVVAI
EEEEECCCCCCHHHHCCCEEEEEEECCCCCCCCCCEEHHHHHHHHHHHHCCHHHEEEEEE
HNFGAGDIIEIAPPSGPTLLLPFTNAVVPTVDLAAGQVVIELPNEIEGDTPNHPEA
EECCCCCEEEECCCCCCEEEEEECCCCCCEEECCCCEEEEECCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA