| Definition | Rhodopseudomonas palustris TIE-1 chromosome, complete genome. |
|---|---|
| Accession | NC_011004 |
| Length | 5,744,041 |
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The map label for this gene is 192288600
Identifier: 192288600
GI number: 192288600
Start: 181632
End: 182702
Strand: Reverse
Name: 192288600
Synonym: Rpal_0167
Alternate gene names: NA
Gene position: 182702-181632 (Counterclockwise)
Preceding gene: 192288603
Following gene: 192288589
Centisome position: 3.18
GC content: 64.71
Gene sequence:
>1071_bases ATGACCACGCCCGTCGATACCTCCAAGCTCCGCATCCTCGAAATCGGCGGCGGCTATTTCAAACTGCAATATCCAGAGCG CACCACCTGCCTGTGGACCTGGACCAAGCTGACCGATGATTTCGGCAAGCTCGACGGTTTCTCGACGCCGGACCGCGTGC TGCGCGAACTGCGCGCCGCCGGCCGCGGCGAATACGACGTCGTGGTGGTCAACAGCCTGCGCTATTCGCCCTGGCATCCG CGCTATTGGGCGCGCGGGATCTTCTACACCCCGACCAATCCGTGGGCCGCGCTGACCCGCCAATTCGGTCCCAGCGTATT CCGCTGGGTGAAGTCCCCGGTGCCGGTGGTCGCGGTCGAGATGGACGATCACTTCGCGATTTCGAAGAGCAGCGTCTTCC TGCTCGATAAGGCTGAGGCGTATTTCAAGCGCGAGCTGCCGTGCGACAAATGGCAGGCGCTCGCCGGCACGGTGCATCCG CATCTGCCGACGTTGCGCTATCGGCGCAGCGAGAAATGGCAGCGACGGATCGACAAGCTGCAGCCGATCTCACTGCCGCA ATTCCGGTTCGATGCGCGCTGGCGGGATGCGCCATTTCCTGAGAAGACCCACGACATCTTCTTCATCGGCTCGGTCAACG GCAATTCAACGGTGCGGCGCGACGGCCTGCCTGAGCTGGAGCGGCTGCGCGCGGCGGGCGTTCGGATCGATCAGCCGACC GAGCGACTGCCCTACGACGCCTTCATGGAGCGGATGTCGCACTCTTGGCTGGCGTGGTCGCCGGAGGGGATGGGCTGGGA TTGCTATCGGCATTACGAAGCGCCGATCGTGCAGTCGGTGCCGCTGATGAACAATCCGACCATCCTGCGCTACGCGCCGC TGCTGTCCGGTCAGCACGGCGTGTACTACGACGTCGAACCGGGCGGGCTGGAGCGCGCCGTCACGTCAGCGCTGGCGGAT AAAGATAACCTCCGCCGCATGGCGCTGGCCGCGCGCGACCACGTCTTCGCCCATCACACCGTGAAGGCGCACTGCGATCA CATCCTGCAAGCGGCGATGGCGGCGAGGTGA
Upstream 100 bases:
>100_bases CAGCGGCGATCGGCCTAGGCGACGACCGTTCCAGTGGTGTCGCCGACCCACGCGGGCAGCGCGTGCGCCTGCTGCAATCT GCGCCAGGCGAATTCAATTC
Downstream 100 bases:
>100_bases TCAGTATGCGCGGCAATGCAGCCGTCACCCTGAGGCTTCGGCCCGGATTCGCTCCTCCGAGTGCGCAGGTTTTCCGACAT TGCGAGGAGCGAAGCGACGA
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 356; Mature: 355
Protein sequence:
>356_residues MTTPVDTSKLRILEIGGGYFKLQYPERTTCLWTWTKLTDDFGKLDGFSTPDRVLRELRAAGRGEYDVVVVNSLRYSPWHP RYWARGIFYTPTNPWAALTRQFGPSVFRWVKSPVPVVAVEMDDHFAISKSSVFLLDKAEAYFKRELPCDKWQALAGTVHP HLPTLRYRRSEKWQRRIDKLQPISLPQFRFDARWRDAPFPEKTHDIFFIGSVNGNSTVRRDGLPELERLRAAGVRIDQPT ERLPYDAFMERMSHSWLAWSPEGMGWDCYRHYEAPIVQSVPLMNNPTILRYAPLLSGQHGVYYDVEPGGLERAVTSALAD KDNLRRMALAARDHVFAHHTVKAHCDHILQAAMAAR
Sequences:
>Translated_356_residues MTTPVDTSKLRILEIGGGYFKLQYPERTTCLWTWTKLTDDFGKLDGFSTPDRVLRELRAAGRGEYDVVVVNSLRYSPWHP RYWARGIFYTPTNPWAALTRQFGPSVFRWVKSPVPVVAVEMDDHFAISKSSVFLLDKAEAYFKRELPCDKWQALAGTVHP HLPTLRYRRSEKWQRRIDKLQPISLPQFRFDARWRDAPFPEKTHDIFFIGSVNGNSTVRRDGLPELERLRAAGVRIDQPT ERLPYDAFMERMSHSWLAWSPEGMGWDCYRHYEAPIVQSVPLMNNPTILRYAPLLSGQHGVYYDVEPGGLERAVTSALAD KDNLRRMALAARDHVFAHHTVKAHCDHILQAAMAAR >Mature_355_residues TTPVDTSKLRILEIGGGYFKLQYPERTTCLWTWTKLTDDFGKLDGFSTPDRVLRELRAAGRGEYDVVVVNSLRYSPWHPR YWARGIFYTPTNPWAALTRQFGPSVFRWVKSPVPVVAVEMDDHFAISKSSVFLLDKAEAYFKRELPCDKWQALAGTVHPH LPTLRYRRSEKWQRRIDKLQPISLPQFRFDARWRDAPFPEKTHDIFFIGSVNGNSTVRRDGLPELERLRAAGVRIDQPTE RLPYDAFMERMSHSWLAWSPEGMGWDCYRHYEAPIVQSVPLMNNPTILRYAPLLSGQHGVYYDVEPGGLERAVTSALADK DNLRRMALAARDHVFAHHTVKAHCDHILQAAMAAR
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 41068; Mature: 40937
Theoretical pI: Translated: 9.50; Mature: 9.50
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.1 %Cys (Translated Protein) 2.2 %Met (Translated Protein) 3.4 %Cys+Met (Translated Protein) 1.1 %Cys (Mature Protein) 2.0 %Met (Mature Protein) 3.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTTPVDTSKLRILEIGGGYFKLQYPERTTCLWTWTKLTDDFGKLDGFSTPDRVLRELRAA CCCCCCCCCEEEEEECCCEEEEECCCCCEEEEEEHHHHHHHHHCCCCCCHHHHHHHHHHC GRGEYDVVVVNSLRYSPWHPRYWARGIFYTPTNPWAALTRQFGPSVFRWVKSPVPVVAVE CCCCEEEEEEECCCCCCCCCCHHHCEEEECCCCHHHHHHHHHCHHHHHHHCCCCCEEEEE MDDHFAISKSSVFLLDKAEAYFKRELPCDKWQALAGTVHPHLPTLRYRRSEKWQRRIDKL ECCCEEECCCCEEEEECHHHHHHHCCCHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHC QPISLPQFRFDARWRDAPFPEKTHDIFFIGSVNGNSTVRRDGLPELERLRAAGVRIDQPT CCCCCCCEEECCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCHHHHHHHCCCCCCCCH ERLPYDAFMERMSHSWLAWSPEGMGWDCYRHYEAPIVQSVPLMNNPTILRYAPLLSGQHG HHCCHHHHHHHHCCCCEEECCCCCCCHHHHHCCCCHHHCCCCCCCCEEEEEECCCCCCCC VYYDVEPGGLERAVTSALADKDNLRRMALAARDHVFAHHTVKAHCDHILQAAMAAR EEEECCCCCHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC >Mature Secondary Structure TTPVDTSKLRILEIGGGYFKLQYPERTTCLWTWTKLTDDFGKLDGFSTPDRVLRELRAA CCCCCCCCEEEEEECCCEEEEECCCCCEEEEEEHHHHHHHHHCCCCCCHHHHHHHHHHC GRGEYDVVVVNSLRYSPWHPRYWARGIFYTPTNPWAALTRQFGPSVFRWVKSPVPVVAVE CCCCEEEEEEECCCCCCCCCCHHHCEEEECCCCHHHHHHHHHCHHHHHHHCCCCCEEEEE MDDHFAISKSSVFLLDKAEAYFKRELPCDKWQALAGTVHPHLPTLRYRRSEKWQRRIDKL ECCCEEECCCCEEEEECHHHHHHHCCCHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHC QPISLPQFRFDARWRDAPFPEKTHDIFFIGSVNGNSTVRRDGLPELERLRAAGVRIDQPT CCCCCCCEEECCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCHHHHHHHCCCCCCCCH ERLPYDAFMERMSHSWLAWSPEGMGWDCYRHYEAPIVQSVPLMNNPTILRYAPLLSGQHG HHCCHHHHHHHHCCCCEEECCCCCCCHHHHHCCCCHHHCCCCCCCCEEEEEECCCCCCCC VYYDVEPGGLERAVTSALADKDNLRRMALAARDHVFAHHTVKAHCDHILQAAMAAR EEEECCCCCHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA