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The map label for this gene is atpC

Identifier: 192288603

GI number: 192288603

Start: 184618

End: 185025

Strand: Reverse

Name: atpC

Synonym: Rpal_0170

Alternate gene names: 192288603

Gene position: 185025-184618 (Counterclockwise)

Preceding gene: 192288604

Following gene: 192288600

Centisome position: 3.22

GC content: 65.44

Gene sequence:

>408_bases
ATGTCCACCTTCCACTTCGATCTGGTTTCGCCCGAAATGGTCGCCTTCTCCGGCGATGTCGATCAGGTCGACATTCCGGG
CGCCGAGGGTGACTTCGGCGTGCTCGCCGGCCACGCGCCGGTGGTGGCGGTGATCCGCCCCGGCATCCTCACCGTGACGG
CGGGTGCCAACAAGCAGAAGATCGTCGTGCTCGGCGGCATCGCCGAAGTGTCCGACAAGGGCCTCACCGTGCTGGCCGAC
GTCGCCACTCCGGCGCCGGACGTCGACCTGCAGGACTTTGCCGCGACCATCCAGACGATGGAGCAGCAGATCCCCGGCAA
GGTCGGCGACGAACTCGACCGCGCGATCGAGCGCCTGGATCACTTCAAGAGCATCCAGCACGAACTCAACACCACCGCGA
TGCACTAA

Upstream 100 bases:

>100_bases
GTCATGGCCGGGCTTGACCCGGCCATCCATCGCCTCAAATCAGTTTCACTGATGGACCCGCGGGTCGAGCCCGCGGGTGA
CCGCAGAGAGAGCAGCGAGC

Downstream 100 bases:

>100_bases
GTCGCAGTCAGGTGTTCCGACGTTTCGAATGGCCGGGCATCGTCCCGGCCATTTGCTTTTGATGCGACGTTCTACCAGCC
GTCATTGCCGGGCTTGACCC

Product: F0F1 ATP synthase subunit epsilon

Products: ADP; phosphate; H+

Alternate protein names: ATP synthase F1 sector epsilon subunit; F-ATPase epsilon subunit

Number of amino acids: Translated: 135; Mature: 134

Protein sequence:

>135_residues
MSTFHFDLVSPEMVAFSGDVDQVDIPGAEGDFGVLAGHAPVVAVIRPGILTVTAGANKQKIVVLGGIAEVSDKGLTVLAD
VATPAPDVDLQDFAATIQTMEQQIPGKVGDELDRAIERLDHFKSIQHELNTTAMH

Sequences:

>Translated_135_residues
MSTFHFDLVSPEMVAFSGDVDQVDIPGAEGDFGVLAGHAPVVAVIRPGILTVTAGANKQKIVVLGGIAEVSDKGLTVLAD
VATPAPDVDLQDFAATIQTMEQQIPGKVGDELDRAIERLDHFKSIQHELNTTAMH
>Mature_134_residues
STFHFDLVSPEMVAFSGDVDQVDIPGAEGDFGVLAGHAPVVAVIRPGILTVTAGANKQKIVVLGGIAEVSDKGLTVLADV
ATPAPDVDLQDFAATIQTMEQQIPGKVGDELDRAIERLDHFKSIQHELNTTAMH

Specific function: Produces ATP from ADP in the presence of a proton gradient across the membrane

COG id: COG0355

COG function: function code C; F0F1-type ATP synthase, epsilon subunit (mitochondrial delta subunit)

Gene ontology:

Cell location: Cell inner membrane; Peripheral membrane protein

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ATPase epsilon chain family

Homologues:

Organism=Escherichia coli, GI1790169, Length=126, Percent_Identity=34.9206349206349, Blast_Score=78, Evalue=2e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): ATPE_RHOPA (Q6NDD3)

Other databases:

- EMBL:   BX572593
- RefSeq:   NP_945528.1
- ProteinModelPortal:   Q6NDD3
- SMR:   Q6NDD3
- GeneID:   2688875
- GenomeReviews:   BX571963_GR
- KEGG:   rpa:RPA0175
- NMPDR:   fig|258594.1.peg.172
- HOGENOM:   HBG663981
- OMA:   NNAEIGS
- ProtClustDB:   PRK13448
- BioCyc:   RPAL258594:RPA0175-MONOMER
- BRENDA:   3.6.3.14
- HAMAP:   MF_00530
- InterPro:   IPR001469
- InterPro:   IPR020546
- Gene3D:   G3DSA:2.60.15.10
- PANTHER:   PTHR13822
- ProDom:   PD000944
- TIGRFAMs:   TIGR01216

Pfam domain/function: PF02823 ATP-synt_DE_N; SSF51344 ATPsynt_DE

EC number: 3.6.3.14

Molecular weight: Translated: 14258; Mature: 14127

Theoretical pI: Translated: 4.26; Mature: 4.26

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSTFHFDLVSPEMVAFSGDVDQVDIPGAEGDFGVLAGHAPVVAVIRPGILTVTAGANKQK
CCEEECCCCCCCEEEECCCCCEEECCCCCCCCEEEECCCCEEEEECCCEEEEECCCCCCE
IVVLGGIAEVSDKGLTVLADVATPAPDVDLQDFAATIQTMEQQIPGKVGDELDRAIERLD
EEEEECCHHCCCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
HFKSIQHELNTTAMH
HHHHHHHHHHHHCCC
>Mature Secondary Structure 
STFHFDLVSPEMVAFSGDVDQVDIPGAEGDFGVLAGHAPVVAVIRPGILTVTAGANKQK
CEEECCCCCCCEEEECCCCCEEECCCCCCCCEEEECCCCEEEEECCCEEEEECCCCCCE
IVVLGGIAEVSDKGLTVLADVATPAPDVDLQDFAATIQTMEQQIPGKVGDELDRAIERLD
EEEEECCHHCCCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
HFKSIQHELNTTAMH
HHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: Borate; diphosphate; HCO3- [C]

Metal ions: Co2+; Fe2+; Mn2+; Zn2+ [C]

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; H2O; H+

Specific reaction: ATP + H2O + H+(in) = ADP + phosphate + H+(out)

General reaction: Phosphorous acid anhydride hydrolysis [C]

Inhibitor: Ca2+; CN-; Efrapeptin; Ethidiumbromide; Guanidines analogs; Oligomycin; Quercetin; Trialkyl tin derivatives; Venturicidin [C]

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA