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The map label for this gene is araQ [H]

Identifier: 192288563

GI number: 192288563

Start: 143717

End: 144553

Strand: Reverse

Name: araQ [H]

Synonym: Rpal_0130

Alternate gene names: 192288563

Gene position: 144553-143717 (Counterclockwise)

Preceding gene: 192288564

Following gene: 192288562

Centisome position: 2.52

GC content: 64.99

Gene sequence:

>837_bases
ATGAGCGCCGCACGACCCAGCCTGATCCGCTCCAGCTTCCGCCACGCCGCTCTGATGGTTGGCGCCGTGCTGATGCTGGC
GCCGTTCGTCTGGATGCTGTCGACCGCGTCGAAGCCGCCGGAAGAGATCTACTCCAGCGACCTGCATCTGATCCCGCATC
ACTTTGCGCTGTGGGAGAATCTCCGCATCGCGTTCGGCAAGGCCGATCTCGGCCGCTTCCTGCTCAACGGCGTGATCGTC
ACGGTGGCGATCTTCACCTGCCAGGTGCTGATCGCGTTGCCGGCCGCCTATGCGCTCGCCAAGCTGCGCTTCCTTGGGCG
CAAGGCGCTGTTCGCGCTGGTTCTGTTCGGCATTCTGATCCCGCCGCAGGCGACCGCGATCCCGGTGTTCCTGCTGCTGC
ACCAGCTCGGGGCGCTCGACAGCTACGCGGCGCTGGTGCTGCCGTTCACCATCTCGGTGTTCGGCATCTTTCTGATGCGG
CAGTTCTTCATGACCGTGCCGGACGATCTGCTCGACGCCGCCCGGATGGACGGGATGTCGGAGTTCGCCATCGTCTGGCG
GGTGATGCTGCCGACTGCGATCCCTGCGGTCACCGCGTTCGGCATCTTCTCGGTGGTGGCGCACTGGAACGACTACTTCT
GGCCGCTGATCGTGCTCAACAGCCAGCAGTACTACACCCCGCCGCTCGCGGTCGCGCATTTCCGCAATGCCGAGGCGGGC
ACCAGCTACGGCCCGCTGATGGCGGCCGCGATCGTGATCATCACCCCGCTCGTCGTTGCCTTCCTGCTGGCGCAGCGCCG
CTTCATCGAAGGCATCACTTTGACCGGACTCAAGTAA

Upstream 100 bases:

>100_bases
GCTCCGGCTATGCCGCCGCGGTGACCGTGGTGTTCCTCGGCCTGGTGCTGCTGCTGACCCTGGTGAAATCGCGGCTCGCC
GCCAAGCAGGTGCACTACGC

Downstream 100 bases:

>100_bases
TCCAACCCAACAGGAGATCGACATGCTGAAGAGATGGATCGCCGCAGCCGCGATGACGCTGGTTGCGGGCATCGCCCACG
CCCAGCAGCAGACCGAAGTG

Product: ABC transporter inner membrane protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 278; Mature: 277

Protein sequence:

>278_residues
MSAARPSLIRSSFRHAALMVGAVLMLAPFVWMLSTASKPPEEIYSSDLHLIPHHFALWENLRIAFGKADLGRFLLNGVIV
TVAIFTCQVLIALPAAYALAKLRFLGRKALFALVLFGILIPPQATAIPVFLLLHQLGALDSYAALVLPFTISVFGIFLMR
QFFMTVPDDLLDAARMDGMSEFAIVWRVMLPTAIPAVTAFGIFSVVAHWNDYFWPLIVLNSQQYYTPPLAVAHFRNAEAG
TSYGPLMAAAIVIITPLVVAFLLAQRRFIEGITLTGLK

Sequences:

>Translated_278_residues
MSAARPSLIRSSFRHAALMVGAVLMLAPFVWMLSTASKPPEEIYSSDLHLIPHHFALWENLRIAFGKADLGRFLLNGVIV
TVAIFTCQVLIALPAAYALAKLRFLGRKALFALVLFGILIPPQATAIPVFLLLHQLGALDSYAALVLPFTISVFGIFLMR
QFFMTVPDDLLDAARMDGMSEFAIVWRVMLPTAIPAVTAFGIFSVVAHWNDYFWPLIVLNSQQYYTPPLAVAHFRNAEAG
TSYGPLMAAAIVIITPLVVAFLLAQRRFIEGITLTGLK
>Mature_277_residues
SAARPSLIRSSFRHAALMVGAVLMLAPFVWMLSTASKPPEEIYSSDLHLIPHHFALWENLRIAFGKADLGRFLLNGVIVT
VAIFTCQVLIALPAAYALAKLRFLGRKALFALVLFGILIPPQATAIPVFLLLHQLGALDSYAALVLPFTISVFGIFLMRQ
FFMTVPDDLLDAARMDGMSEFAIVWRVMLPTAIPAVTAFGIFSVVAHWNDYFWPLIVLNSQQYYTPPLAVAHFRNAEAGT
SYGPLMAAAIVIITPLVVAFLLAQRRFIEGITLTGLK

Specific function: Part of the binding-protein-dependent transport system for L-arabinose. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG0395

COG function: function code G; ABC-type sugar transport system, permease component

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1789860, Length=279, Percent_Identity=28.673835125448, Blast_Score=124, Evalue=5e-30,
Organism=Escherichia coli, GI1787571, Length=292, Percent_Identity=28.7671232876712, Blast_Score=104, Evalue=7e-24,
Organism=Escherichia coli, GI1790464, Length=250, Percent_Identity=24.8, Blast_Score=69, Evalue=2e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 30588; Mature: 30457

Theoretical pI: Translated: 9.64; Mature: 9.64

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSAARPSLIRSSFRHAALMVGAVLMLAPFVWMLSTASKPPEEIYSSDLHLIPHHFALWEN
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHCCCCHHHHHHHHHHHH
LRIAFGKADLGRFLLNGVIVTVAIFTCQVLIALPAAYALAKLRFLGRKALFALVLFGILI
HHHEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
PPQATAIPVFLLLHQLGALDSYAALVLPFTISVFGIFLMRQFFMTVPDDLLDAARMDGMS
CCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCHH
EFAIVWRVMLPTAIPAVTAFGIFSVVAHWNDYFWPLIVLNSQQYYTPPLAVAHFRNAEAG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCHHHHHHCCCCCC
TSYGPLMAAAIVIITPLVVAFLLAQRRFIEGITLTGLK
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
>Mature Secondary Structure 
SAARPSLIRSSFRHAALMVGAVLMLAPFVWMLSTASKPPEEIYSSDLHLIPHHFALWEN
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHCCCCHHHHHHHHHHHH
LRIAFGKADLGRFLLNGVIVTVAIFTCQVLIALPAAYALAKLRFLGRKALFALVLFGILI
HHHEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
PPQATAIPVFLLLHQLGALDSYAALVLPFTISVFGIFLMRQFFMTVPDDLLDAARMDGMS
CCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCHH
EFAIVWRVMLPTAIPAVTAFGIFSVVAHWNDYFWPLIVLNSQQYYTPPLAVAHFRNAEAG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCHHHHHHCCCCCC
TSYGPLMAAAIVIITPLVVAFLLAQRRFIEGITLTGLK
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9084180; 8969504; 9384377; 10417639 [H]