Click here to switch to the map view.

The map label for this gene is ugpB [C]

Identifier: 192288562

GI number: 192288562

Start: 142414

End: 143694

Strand: Reverse

Name: ugpB [C]

Synonym: Rpal_0129

Alternate gene names: 192288562

Gene position: 143694-142414 (Counterclockwise)

Preceding gene: 192288563

Following gene: 192288561

Centisome position: 2.5

GC content: 63.7

Gene sequence:

>1281_bases
ATGCTGAAGAGATGGATCGCCGCAGCCGCGATGACGCTGGTTGCGGGCATCGCCCACGCCCAGCAGCAGACCGAAGTGGT
GCTGCAGTTCCCGTATCCGGAACTGTTCAGCGAGACCCACAAGCGGATCGCCGAAGAGTTCGCCAAGGTGCATCCGGAGA
TCAAGGTCACGTTCCGGGCGCCGTACGAGTCGTACGAAGAGGCCACCCAGAAGGTGCTGCGCGAGGCGGTGACCAATCAG
CTGCCGGACGTCACCTTCCAGGGCCTGAACCGCATCCGCGTGCTGGTCGACAAGACCATCCCGGCGCCGCTCGATGGCTA
CATCGCGGCCGAGAAGGATTTCGACAAGCAGGGCTTCCATCAGGCGATGTACGACATCGGCACCGCCAGCGGCAAAGTCT
ATGCGCTGCCGTTCGCGATCTCGCTGCCGATCGTCTACGTCAATCTCGATCTGGTGAAACAGGCCGGCGGCGATGTGAAC
AACCTGCCGACCACCTGGGACGGCCTGTTGGATCTGGCCAAGAAGGTCAAGGCGCTCGGCCCCGACACCAACGGCATCAC
GTATGCCTGGGACATCACTGGCAACTGGCTGTGGCAGGCGCCGGTGTTCGCACGCGGCGGCACCATGCTCAACGCCGATG
AAACCAAGGTGGCGTTCGACGGCCCCGAAGGCCAGTTCGCGATGCGCACCATCGCCCGCCTGGTCACCGAAGGCGGCATG
CCGAATCTCGACCAGCCGTCGATGCGCGCCACCTTCGCGGCCGGCAAGACCGGAATCCACATCACCTCGACCTCGGACCT
GAAGAAGACCACCGACATGATCGGCGGCAAGTTCGCGCTGAAGACCATCGCGTTCCCGGACGTCGTCAAGCCGAACGGCC
GGTTGCCGGCGGGCGGCAATGTCGTGCTGATCACCGCCAAGGACAAAGCCAAGCGCGATGCCGCCTGGGAAGTGGTGAAG
TTCTGGACCGGTCCGAAGGGCGCGGCGATCATGGCTGAGACCACCGGCTACATGCCGCCCAACAAGGTCGCCAACGACGT
CTATCTGAAGGATTTCTACGCCAAGAACCCGAACAACTACACCGCGGTCAGCCAGCTCGCGCTGCTGACCAAGTGGTATG
CGTTCCCGGGCGACAACGGCCTGAAGATCACCGACGTGATCAAGGATCATCTCAACTCGATCGTCTCCGGCGCCCGCGCC
AAGGAGCCGGATGCGGTGCTGGCCGACATGACCCGCGACGTCCAGAACCTGCTGCCGAAGACCGTCGGCGCCGCCAAGTA
A

Upstream 100 bases:

>100_bases
ATCACCCCGCTCGTCGTTGCCTTCCTGCTGGCGCAGCGCCGCTTCATCGAAGGCATCACTTTGACCGGACTCAAGTAATC
CAACCCAACAGGAGATCGAC

Downstream 100 bases:

>100_bases
CGTAAGAACCTCCCGGCGACGGAGCGCGTCCAGCGCTCCGTCGCGTCACGTTTTGGAGCGGGCCATGAAACTGATCCACC
TCAGCGACATCCACCTCACC

Product: family 1 extracellular solute-binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 426; Mature: 426

Protein sequence:

>426_residues
MLKRWIAAAAMTLVAGIAHAQQQTEVVLQFPYPELFSETHKRIAEEFAKVHPEIKVTFRAPYESYEEATQKVLREAVTNQ
LPDVTFQGLNRIRVLVDKTIPAPLDGYIAAEKDFDKQGFHQAMYDIGTASGKVYALPFAISLPIVYVNLDLVKQAGGDVN
NLPTTWDGLLDLAKKVKALGPDTNGITYAWDITGNWLWQAPVFARGGTMLNADETKVAFDGPEGQFAMRTIARLVTEGGM
PNLDQPSMRATFAAGKTGIHITSTSDLKKTTDMIGGKFALKTIAFPDVVKPNGRLPAGGNVVLITAKDKAKRDAAWEVVK
FWTGPKGAAIMAETTGYMPPNKVANDVYLKDFYAKNPNNYTAVSQLALLTKWYAFPGDNGLKITDVIKDHLNSIVSGARA
KEPDAVLADMTRDVQNLLPKTVGAAK

Sequences:

>Translated_426_residues
MLKRWIAAAAMTLVAGIAHAQQQTEVVLQFPYPELFSETHKRIAEEFAKVHPEIKVTFRAPYESYEEATQKVLREAVTNQ
LPDVTFQGLNRIRVLVDKTIPAPLDGYIAAEKDFDKQGFHQAMYDIGTASGKVYALPFAISLPIVYVNLDLVKQAGGDVN
NLPTTWDGLLDLAKKVKALGPDTNGITYAWDITGNWLWQAPVFARGGTMLNADETKVAFDGPEGQFAMRTIARLVTEGGM
PNLDQPSMRATFAAGKTGIHITSTSDLKKTTDMIGGKFALKTIAFPDVVKPNGRLPAGGNVVLITAKDKAKRDAAWEVVK
FWTGPKGAAIMAETTGYMPPNKVANDVYLKDFYAKNPNNYTAVSQLALLTKWYAFPGDNGLKITDVIKDHLNSIVSGARA
KEPDAVLADMTRDVQNLLPKTVGAAK
>Mature_426_residues
MLKRWIAAAAMTLVAGIAHAQQQTEVVLQFPYPELFSETHKRIAEEFAKVHPEIKVTFRAPYESYEEATQKVLREAVTNQ
LPDVTFQGLNRIRVLVDKTIPAPLDGYIAAEKDFDKQGFHQAMYDIGTASGKVYALPFAISLPIVYVNLDLVKQAGGDVN
NLPTTWDGLLDLAKKVKALGPDTNGITYAWDITGNWLWQAPVFARGGTMLNADETKVAFDGPEGQFAMRTIARLVTEGGM
PNLDQPSMRATFAAGKTGIHITSTSDLKKTTDMIGGKFALKTIAFPDVVKPNGRLPAGGNVVLITAKDKAKRDAAWEVVK
FWTGPKGAAIMAETTGYMPPNKVANDVYLKDFYAKNPNNYTAVSQLALLTKWYAFPGDNGLKITDVIKDHLNSIVSGARA
KEPDAVLADMTRDVQNLLPKTVGAAK

Specific function: Probably part of an ABC transporter complex [H]

COG id: COG1653

COG function: function code G; ABC-type sugar transport system, periplasmic component

Gene ontology:

Cell location: Periplasm (Probable) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bacterial solute-binding protein 1 family [H]

Homologues:

Organism=Escherichia coli, GI1789862, Length=378, Percent_Identity=23.2804232804233, Blast_Score=78, Evalue=9e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006059
- InterPro:   IPR006061 [H]

Pfam domain/function: PF01547 SBP_bac_1 [H]

EC number: NA

Molecular weight: Translated: 46500; Mature: 46500

Theoretical pI: Translated: 9.18; Mature: 9.18

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLKRWIAAAAMTLVAGIAHAQQQTEVVLQFPYPELFSETHKRIAEEFAKVHPEIKVTFRA
CCHHHHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHHHHHHCCCCEEEEEEC
PYESYEEATQKVLREAVTNQLPDVTFQGLNRIRVLVDKTIPAPLDGYIAAEKDFDKQGFH
CHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHEEEEEECCCCCCCCCCEECCCCCCHHHHH
QAMYDIGTASGKVYALPFAISLPIVYVNLDLVKQAGGDVNNLPTTWDGLLDLAKKVKALG
HHHHHHCCCCCEEEEEEEEEECCEEEEEHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCC
PDTNGITYAWDITGNWLWQAPVFARGGTMLNADETKVAFDGPEGQFAMRTIARLVTEGGM
CCCCCEEEEEECCCCEEEECCEEECCCEEECCCCCEEEEECCCCHHHHHHHHHHHHCCCC
PNLDQPSMRATFAAGKTGIHITSTSDLKKTTDMIGGKFALKTIAFPDVVKPNGRLPAGGN
CCCCCCCHHEEEECCCCCEEEECCCHHHHHHHHHCCHHHEEEECCCCCCCCCCCCCCCCC
VVLITAKDKAKRDAAWEVVKFWTGPKGAAIMAETTGYMPPNKVANDVYLKDFYAKNPNNY
EEEEEECCCCCHHHHHHHHHEECCCCCCEEEEECCCCCCCCHHCCHHHHHHHHCCCCCCH
TAVSQLALLTKWYAFPGDNGLKITDVIKDHLNSIVSGARAKEPDAVLADMTRDVQNLLPK
HHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHH
TVGAAK
HCCCCC
>Mature Secondary Structure
MLKRWIAAAAMTLVAGIAHAQQQTEVVLQFPYPELFSETHKRIAEEFAKVHPEIKVTFRA
CCHHHHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHHHHHHCCCCEEEEEEC
PYESYEEATQKVLREAVTNQLPDVTFQGLNRIRVLVDKTIPAPLDGYIAAEKDFDKQGFH
CHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHEEEEEECCCCCCCCCCEECCCCCCHHHHH
QAMYDIGTASGKVYALPFAISLPIVYVNLDLVKQAGGDVNNLPTTWDGLLDLAKKVKALG
HHHHHHCCCCCEEEEEEEEEECCEEEEEHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCC
PDTNGITYAWDITGNWLWQAPVFARGGTMLNADETKVAFDGPEGQFAMRTIARLVTEGGM
CCCCCEEEEEECCCCEEEECCEEECCCEEECCCCCEEEEECCCCHHHHHHHHHHHHCCCC
PNLDQPSMRATFAAGKTGIHITSTSDLKKTTDMIGGKFALKTIAFPDVVKPNGRLPAGGN
CCCCCCCHHEEEECCCCCEEEECCCHHHHHHHHHCCHHHEEEECCCCCCCCCCCCCCCCC
VVLITAKDKAKRDAAWEVVKFWTGPKGAAIMAETTGYMPPNKVANDVYLKDFYAKNPNNY
EEEEEECCCCCHHHHHHHHHEECCCCCCEEEEECCCCCCCCHHCCHHHHHHHHCCCCCCH
TAVSQLALLTKWYAFPGDNGLKITDVIKDHLNSIVSGARAKEPDAVLADMTRDVQNLLPK
HHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHH
TVGAAK
HCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA