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The map label for this gene is ugpA [H]

Identifier: 192288492

GI number: 192288492

Start: 62041

End: 62922

Strand: Reverse

Name: ugpA [H]

Synonym: Rpal_0059

Alternate gene names: 192288492

Gene position: 62922-62041 (Counterclockwise)

Preceding gene: 192288493

Following gene: 192288491

Centisome position: 1.1

GC content: 61.11

Gene sequence:

>882_bases
ATGCTCAAGCACGCCGTCTTCCAGTCGAAGTTCCTGCCCTATCTGCTGGTGCTGCCGCAGCTCGTGGTGGTGCTGGTGTT
CTTCTATTGGCCGGCCGTGCAGGCGGTGATCCAATCGTTCCTGCTGCAGGATGCGTTCGGTCTATCGACCGTCTTCGTCT
GGTTCGACAACTATCGCGAGCTGCTCGAGCAGCCTGACTACTTCGACGCGATCATCCGCACTTTCGTATTCTCCTTCGCG
ATTGCGCTGTCGTCGCTGTCGCTGGCACTGCTGCTGGCGGTGATGGCGGACCGGCCGCTGCGCGGCTCGACGTTCTACCG
CACCATGCTGATCTGGCCCTACGCGGTGGCGCCGCCGGTGGTCGGTGTGCTGTGGGTGTTCATGCTCAATCCTTCGCTCG
GCGTGATTGCCCATGGGCTTCGCGCGCTCGGCGTCGATTGGAATCCGCTGCTCGATGGTGATCAGGCAGCGCTGCTGATC
GTGCTCGCAGCGGCCTGGAAGCAGATTTCCTATAACTTCCTGTTCTTCCTGGCCGGACTGCAGGCGATTCCGTCCAGCGT
GATCGAGGCGGCCGCGATCGACGGTGCCCGGCCGATGCGCCGGTTCTGGACCATCATCTTCCCGCTGCTGTCGCCGACGA
TTTTCTTCCTGATGATCGTCAACGTCGTGTACGCCTTCTTCGATACTTTCGGCATCATCGACACCATGACGCGCGGCGGT
CCAGCCAAAGCGACCGAGACGCTGGTCTACAAGGTGTATCAGGACGGCCTGCTCGGCTCCAACCTTGGCAGTTCGGCGGC
TCAGTCGGTGATCCTGATGGCGATCGTGATTGCACTAACCGCGATCCAGTTCCGCTTCGTCGAGCGCAAGGTGAATTACT
GA

Upstream 100 bases:

>100_bases
AAGATCGCGGGCTTTCGGAGTACTGGGTCGCCCGGCCAAGCCGGGCGATGACGGCGGAGTGCTTGTTGAGGCCGCCGGCC
ACAGGTAAGCAAACCGCACG

Downstream 100 bases:

>100_bases
TGGTCGAGCGCCGGAAGTTCGGAAACCTGGTGCCGCACCTGATCCTGTGGATCGGCGTCGCGATCGTTGCCTTCCCGGTC
TATCTGGCGTTCGTCGCCTC

Product: ABC transporter inner membrane protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 293; Mature: 293

Protein sequence:

>293_residues
MLKHAVFQSKFLPYLLVLPQLVVVLVFFYWPAVQAVIQSFLLQDAFGLSTVFVWFDNYRELLEQPDYFDAIIRTFVFSFA
IALSSLSLALLLAVMADRPLRGSTFYRTMLIWPYAVAPPVVGVLWVFMLNPSLGVIAHGLRALGVDWNPLLDGDQAALLI
VLAAAWKQISYNFLFFLAGLQAIPSSVIEAAAIDGARPMRRFWTIIFPLLSPTIFFLMIVNVVYAFFDTFGIIDTMTRGG
PAKATETLVYKVYQDGLLGSNLGSSAAQSVILMAIVIALTAIQFRFVERKVNY

Sequences:

>Translated_293_residues
MLKHAVFQSKFLPYLLVLPQLVVVLVFFYWPAVQAVIQSFLLQDAFGLSTVFVWFDNYRELLEQPDYFDAIIRTFVFSFA
IALSSLSLALLLAVMADRPLRGSTFYRTMLIWPYAVAPPVVGVLWVFMLNPSLGVIAHGLRALGVDWNPLLDGDQAALLI
VLAAAWKQISYNFLFFLAGLQAIPSSVIEAAAIDGARPMRRFWTIIFPLLSPTIFFLMIVNVVYAFFDTFGIIDTMTRGG
PAKATETLVYKVYQDGLLGSNLGSSAAQSVILMAIVIALTAIQFRFVERKVNY
>Mature_293_residues
MLKHAVFQSKFLPYLLVLPQLVVVLVFFYWPAVQAVIQSFLLQDAFGLSTVFVWFDNYRELLEQPDYFDAIIRTFVFSFA
IALSSLSLALLLAVMADRPLRGSTFYRTMLIWPYAVAPPVVGVLWVFMLNPSLGVIAHGLRALGVDWNPLLDGDQAALLI
VLAAAWKQISYNFLFFLAGLQAIPSSVIEAAAIDGARPMRRFWTIIFPLLSPTIFFLMIVNVVYAFFDTFGIIDTMTRGG
PAKATETLVYKVYQDGLLGSNLGSSAAQSVILMAIVIALTAIQFRFVERKVNY

Specific function: Part of the ABC transporter complex ugpABCE involved in sn-glycerol-3-phosphate import. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG1175

COG function: function code G; ABC-type sugar transport systems, permease components

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Probable) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1789861, Length=288, Percent_Identity=53.125, Blast_Score=294, Evalue=5e-81,
Organism=Escherichia coli, GI1790465, Length=246, Percent_Identity=29.2682926829268, Blast_Score=84, Evalue=1e-17,
Organism=Escherichia coli, GI1787570, Length=273, Percent_Identity=27.4725274725275, Blast_Score=81, Evalue=8e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 32728; Mature: 32728

Theoretical pI: Translated: 8.69; Mature: 8.69

Prosite motif: PS00639 THIOL_PROTEASE_HIS ; PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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CCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure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CCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11481431 [H]