Click here to switch to the map view.

The map label for this gene is ycjD [H]

Identifier: 192288470

GI number: 192288470

Start: 43000

End: 43479

Strand: Reverse

Name: ycjD [H]

Synonym: Rpal_0037

Alternate gene names: 192288470

Gene position: 43479-43000 (Counterclockwise)

Preceding gene: 192288471

Following gene: 192288469

Centisome position: 0.76

GC content: 65.62

Gene sequence:

>480_bases
ATGGACGATCCGAAGCAACCGACCTGGAACGTGTCGCCGAGCCAGCGCCGGCATGCGCGCGAGCTGCGAAAGAAGTCGAC
CGAGGCCGAGCGGCTGATGTGGGGCGAGCTGCGCGACAAGCGTCTCAATGGCGTCTCGTTCAAGCGACAGGTGCCGATCG
GGCCGTACATCGCCGACTTCGCCTGCCACGCGAAAAAGCTGGTGGTCGAGCTCGATGGCGGTCAGCATTTTCCCGATGAC
GGTGAACGCTCCGATGCGGCGCGCACGGCCGCGATCGAGGCCCGCGGGTTTCGGGTGATCCGCTTCAGCAATCATGAAGT
CATGACTAATCGAGCAGGGGTGTTGCAGAGCATTGCGGATGTGCTTGCGGCAAGGGCCCTCCCCCCAACCCTCTCCCGCA
AGCGGGAGAGGGTGCGCGCCAAGCGCGCGGCGAAGCCTCGCTCTGACGCGGGTGCCGCGAACGACCAGGGCGATGAGTAG

Upstream 100 bases:

>100_bases
TGTCGAGATGATTGAAGACCTCGCAACGCCGCACGGCGAACTCCCTCTCCCGCTTGCGGGAGAGGGTTGGGGTGAGGGCG
ACGCGGGGACGGAGCTTGCG

Downstream 100 bases:

>100_bases
ATGCATTCGCGTAGCCTCACCATTCGGCACGGCCTGCTCCCTCTCCCGCTTGCGGGAGAGGGGTGGGGTGAGGGCGACGC
GGGCACCGTTTCGACGATTC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 159; Mature: 159

Protein sequence:

>159_residues
MDDPKQPTWNVSPSQRRHARELRKKSTEAERLMWGELRDKRLNGVSFKRQVPIGPYIADFACHAKKLVVELDGGQHFPDD
GERSDAARTAAIEARGFRVIRFSNHEVMTNRAGVLQSIADVLAARALPPTLSRKRERVRAKRAAKPRSDAGAANDQGDE

Sequences:

>Translated_159_residues
MDDPKQPTWNVSPSQRRHARELRKKSTEAERLMWGELRDKRLNGVSFKRQVPIGPYIADFACHAKKLVVELDGGQHFPDD
GERSDAARTAAIEARGFRVIRFSNHEVMTNRAGVLQSIADVLAARALPPTLSRKRERVRAKRAAKPRSDAGAANDQGDE
>Mature_159_residues
MDDPKQPTWNVSPSQRRHARELRKKSTEAERLMWGELRDKRLNGVSFKRQVPIGPYIADFACHAKKLVVELDGGQHFPDD
GERSDAARTAAIEARGFRVIRFSNHEVMTNRAGVLQSIADVLAARALPPTLSRKRERVRAKRAAKPRSDAGAANDQGDE

Specific function: Unknown

COG id: COG2852

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: To H.influenzae HI_1162 and to HI_0925 [H]

Homologues:

Organism=Escherichia coli, GI1787546, Length=112, Percent_Identity=43.75, Blast_Score=98, Evalue=3e-22,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004603
- InterPro:   IPR007569
- InterPro:   IPR011335 [H]

Pfam domain/function: PF04480 DUF559 [H]

EC number: NA

Molecular weight: Translated: 17823; Mature: 17823

Theoretical pI: Translated: 10.91; Mature: 10.91

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDDPKQPTWNVSPSQRRHARELRKKSTEAERLMWGELRDKRLNGVSFKRQVPIGPYIADF
CCCCCCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCEECCCCCCHHHHH
ACHAKKLVVELDGGQHFPDDGERSDAARTAAIEARGFRVIRFSNHEVMTNRAGVLQSIAD
HHHHEEEEEEECCCCCCCCCCCCCHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHHH
VLAARALPPTLSRKRERVRAKRAAKPRSDAGAANDQGDE
HHHHHCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MDDPKQPTWNVSPSQRRHARELRKKSTEAERLMWGELRDKRLNGVSFKRQVPIGPYIADF
CCCCCCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCEECCCCCCHHHHH
ACHAKKLVVELDGGQHFPDDGERSDAARTAAIEARGFRVIRFSNHEVMTNRAGVLQSIAD
HHHHEEEEEEECCCCCCCCCCCCCHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHHH
VLAARALPPTLSRKRERVRAKRAAKPRSDAGAANDQGDE
HHHHHCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503; 8075395; 1364817 [H]