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The map label for this gene is virB9c [H]

Identifier: 190895229

GI number: 190895229

Start: 993052

End: 993906

Strand: Reverse

Name: virB9c [H]

Synonym: RHECIAT_PC0000902

Alternate gene names: 190895229

Gene position: 993906-993052 (Counterclockwise)

Preceding gene: 190895230

Following gene: 190895228

Centisome position: 91.06

GC content: 60.94

Gene sequence:

>855_bases
TTGAGATCGCACGTTTTCCTTCCGCTTATCCTTGCCGGCAGCCTCTCCTCGCCGGTGCTCGCCCTCGAAACGCCACGCGG
TGCGGCGCAGGATAGCCGCATTCGCTTCGTCGATTATCAGCCCTATAACATCACCAAGGTGGTCGGCACGCTCCGCTCCT
CCGTTCAGATCGAATTCGCCGCCGATGAAGAAATCGCCCATGTCGCGCTCGGCAACAGCGTTGCGTGGGAGGTGGCGCCG
GCCGGCAACATTCTTTTCCTGAAGCCTCGGGAAAATCAGCCTGTGACGAATATCTCGGTCGTCACGACACGGCGGGATGG
ATCGACCCGCAGCTATCAGATGGAGCTCACCGTCCGTGACGGCAGCGTCGAGGCCGGGCAGAACACCTATTTCTATGTGA
AATATCGCTACCCAGCTGACGAAGCCGAGCGGCGCCGGCAGGAGGCAGTTACGCGAGCCCAGGCGGCGCAGGCCGGCGAG
GCCGATCGCGTACTTGCCCTTCATGAAGCTTTTGGACCGCGCAATTGGCGCTATTCGGCGCAGGGATCCCAGGCGCTCGA
GCCGCAAGCCGTTTATGACAACGGCAAGGTCACGAGCTTCGCCTTTGTCGGCAACCAGGAAATGCCGGCGATCTATATGG
AAAACTCCGACGGCAGCGAAAGCCTGGTTCCGAAGTCCGTAGACGGAAATCTCGTCCTCGTTCATGCGATCAGCCGCAAG
TTCATCCTGCGCCGGGGAGGCGACGTCCTCTGCGTCTTCAACGAAGCCTACGATCGCGTCGGCATCAATCCCGAGACCAA
CACGACGTCACCGTCGGTCAAGCGCGTCGTCAAGGCGCCGCAAGATGCGCAATAG

Upstream 100 bases:

>100_bases
CCTTTTCCTACGCCAACGCGCCGATGTCCTCAACCGATCGGCTGATCAATCCGCTCGGCTTCGTCGTCAGCGAATATCGC
GCCGATCCGGAGGCCATCAA

Downstream 100 bases:

>100_bases
GAGGGGGCATGGTCGAGGAAGAGATTATCCAGATCCCCGGTGAGCGCGCCGAGACGTCGGCCGGCGGCCGGCTCGACAAC
AATCCCATCCTCAAACGCGG

Product: transport secretion system IV protein, VirB9

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 284; Mature: 284

Protein sequence:

>284_residues
MRSHVFLPLILAGSLSSPVLALETPRGAAQDSRIRFVDYQPYNITKVVGTLRSSVQIEFAADEEIAHVALGNSVAWEVAP
AGNILFLKPRENQPVTNISVVTTRRDGSTRSYQMELTVRDGSVEAGQNTYFYVKYRYPADEAERRRQEAVTRAQAAQAGE
ADRVLALHEAFGPRNWRYSAQGSQALEPQAVYDNGKVTSFAFVGNQEMPAIYMENSDGSESLVPKSVDGNLVLVHAISRK
FILRRGGDVLCVFNEAYDRVGINPETNTTSPSVKRVVKAPQDAQ

Sequences:

>Translated_284_residues
MRSHVFLPLILAGSLSSPVLALETPRGAAQDSRIRFVDYQPYNITKVVGTLRSSVQIEFAADEEIAHVALGNSVAWEVAP
AGNILFLKPRENQPVTNISVVTTRRDGSTRSYQMELTVRDGSVEAGQNTYFYVKYRYPADEAERRRQEAVTRAQAAQAGE
ADRVLALHEAFGPRNWRYSAQGSQALEPQAVYDNGKVTSFAFVGNQEMPAIYMENSDGSESLVPKSVDGNLVLVHAISRK
FILRRGGDVLCVFNEAYDRVGINPETNTTSPSVKRVVKAPQDAQ
>Mature_284_residues
MRSHVFLPLILAGSLSSPVLALETPRGAAQDSRIRFVDYQPYNITKVVGTLRSSVQIEFAADEEIAHVALGNSVAWEVAP
AGNILFLKPRENQPVTNISVVTTRRDGSTRSYQMELTVRDGSVEAGQNTYFYVKYRYPADEAERRRQEAVTRAQAAQAGE
ADRVLALHEAFGPRNWRYSAQGSQALEPQAVYDNGKVTSFAFVGNQEMPAIYMENSDGSESLVPKSVDGNLVLVHAISRK
FILRRGGDVLCVFNEAYDRVGINPETNTTSPSVKRVVKAPQDAQ

Specific function: Component of the type IV secretion system virB/virD4 which could be a major virulence determinant for subversion of human endothelial cell (HEC) function [H]

COG id: COG3504

COG function: function code U; Type IV secretory pathway, VirB9 components

Gene ontology:

Cell location: Periplasm (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the trbG/virB9 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010258
- InterPro:   IPR014148 [H]

Pfam domain/function: PF03524 CagX [H]

EC number: NA

Molecular weight: Translated: 31307; Mature: 31307

Theoretical pI: Translated: 6.96; Mature: 6.96

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRSHVFLPLILAGSLSSPVLALETPRGAAQDSRIRFVDYQPYNITKVVGTLRSSVQIEFA
CCCCEEEEEEEECCCCCCEEEEECCCCCCCCCEEEEEEECCCCHHHHHHHHHCCEEEEEE
ADEEIAHVALGNSVAWEVAPAGNILFLKPRENQPVTNISVVTTRRDGSTRSYQMELTVRD
CCCCEEEEEECCCEEEEEECCCCEEEEECCCCCCCCEEEEEEEECCCCCEEEEEEEEEEC
GSVEAGQNTYFYVKYRYPADEAERRRQEAVTRAQAAQAGEADRVLALHEAFGPRNWRYSA
CCEECCCCEEEEEEEECCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEEHHCCCCCEEECC
QGSQALEPQAVYDNGKVTSFAFVGNQEMPAIYMENSDGSESLVPKSVDGNLVLVHAISRK
CCCCCCCCCEEECCCCEEEEEEECCCCCCEEEEECCCCCCCCCCCCCCCCEEEEEECCHH
FILRRGGDVLCVFNEAYDRVGINPETNTTSPSVKRVVKAPQDAQ
HHHHCCCCEEEEEECHHHHCCCCCCCCCCCHHHHHHHCCCCCCC
>Mature Secondary Structure
MRSHVFLPLILAGSLSSPVLALETPRGAAQDSRIRFVDYQPYNITKVVGTLRSSVQIEFA
CCCCEEEEEEEECCCCCCEEEEECCCCCCCCCEEEEEEECCCCHHHHHHHHHCCEEEEEE
ADEEIAHVALGNSVAWEVAPAGNILFLKPRENQPVTNISVVTTRRDGSTRSYQMELTVRD
CCCCEEEEEECCCEEEEEECCCCEEEEECCCCCCCCEEEEEEEECCCCCEEEEEEEEEEC
GSVEAGQNTYFYVKYRYPADEAERRRQEAVTRAQAAQAGEADRVLALHEAFGPRNWRYSA
CCEECCCCEEEEEEEECCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEEHHCCCCCEEECC
QGSQALEPQAVYDNGKVTSFAFVGNQEMPAIYMENSDGSESLVPKSVDGNLVLVHAISRK
CCCCCCCCCEEECCCCEEEEEEECCCCCCEEEEECCCCCCCCCCCCCCCCEEEEEECCHH
FILRRGGDVLCVFNEAYDRVGINPETNTTSPSVKRVVKAPQDAQ
HHHHCCCCEEEEEECHHHHCCCCCCCCCCCHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA