| Definition | Rhizobium etli CIAT 652 plasmid pC, complete sequence. |
|---|---|
| Accession | NC_010997 |
| Length | 1,091,523 |
Click here to switch to the map view.
The map label for this gene is 190895145
Identifier: 190895145
GI number: 190895145
Start: 876033
End: 877676
Strand: Reverse
Name: 190895145
Synonym: RHECIAT_PC0000815
Alternate gene names: NA
Gene position: 877676-876033 (Counterclockwise)
Preceding gene: 190895146
Following gene: 190895144
Centisome position: 80.41
GC content: 59.31
Gene sequence:
>1644_bases ATGACACAGAAACGCGATGCAATCGCCGAGATGCGGCTCCAGATCATGTGGAACAGGCTCATCTCCGTCGTCGAAGAGCA GGCTCTGACACTGGTGCGCACCGCTTTTAGCACGAGCGTGCGGGAGGCGGGTGACCTTTCAGCCGGTGTATTCAATATTG CCGGTGAAATGGTCGCACAGGCCGTAACGGGAACGCCCGGACACGTGAACGCCATGGGCGAAGCCGTAAGTCATTTCATC AACACGATCGGACGCGACAATATTTTCGAGGGCGATGTCTACATCACCAACGATCCCTGGAAGGGTACCGGACATCTACA CGACTTCACGGTCGTCAGCCCATCCTTCCACAAGGGTAGCCTGATAGGCTTTTTCGCATGCACCGCGCACGTCGTCGATG TCGGCGGACGCGGCTTCGGACCCGACGCTGGTGAAGTGTACGAAGAAGGCATTTTCATCCCGATCATGAAGTTCGCGGAG CGAGGCGCAGTAAACCGCGATCTGATCAACATCGTTCGTAACAACGTACGCGAAGCCGACCAGGTCGTCGGAGACCTGTA TTCGCTCGCCGCCTGCAACGAGATCGGCCACAAGCGGCTTCTCGAAATGCTCGCGGAATTCGATATTGCCGATATCGAGG ATCTTGCGAAGTTCATCTTCGATCACTCCTACCAGGCTACCGTCGACCGCATCGCCGAACTGCCCGCAGGTATCTACCGC AACTCGATGCGCGTGGACGGCTACGGATCGGCGATCGACATGGTCGTAAAGCTCGATGTGCGGAAGGACGAAATCATCGC CGACTTCGATGGTACATCGCCGCCCAGTCCCCTCGGCATCAACGTCCCGCTGATCTATACGACGGCATACGCCGCATACG GCTTGAAATGCTCGCTGGCACCGGAGATTCCAAACAATGCGGCGTCCCTGAAGCCATTCAGGATCATTGCACCGGAGAAT TGCATTTTGAATGCGCAGCGACCAGCGCCGGTCGCTGTTCGCCACGTACTCGGTCACTTCGTTCCGGATACCGTGCTCGG CGCAGTCCATAAGATGCTGCCCGACACGGTTCCGGCGGAAGGCGCTGGCGCCCTGTGGAATATCCACCTCAGTGCCCGCC CGTCTCAAGGCCGTGCAGCCAACGGCTTCGATCTGCACCGCACCGAGATCCTGATGTTCAATTCCGGCGGAAGCGGTGCT CGCCCAACGCTCGACGGTCTCAATGCGACTGCTTTTCCAAGCGGCGTTCACAGCATGTCGGTGGAAGCAACCGAGCACGT GGGCCCGGTCATCGTTTGGCGCAAAGAATTGCGAAATGGATCGGGCGGCGAGGGGCGCCAGCGCGGCGGCCTTGGTCAAG TCGTTGAGATCGCACCGACGGACGGTCATGAATTCTACTTCAACGCCATGTTCGACCGAGTCGAAAACGCGGCGAGGGGC CGGGAAGGGGGCGAAAATGGCGCCTCGGGCCGCGCCTATCTCAACGACGGCACCGCCCTGAATGCAAAGGGCCGGCAGTT CGTCCCAGAAGGCAAAAGACTGGTTATCGAGCTTCCCGGCGGCGGTGGCTATGGCAAGCCCGACGATAGGCCGCACGAAG CAGTCGAACGGGATCGTCTCGACCAGTATGTCGTTTCGAAGTGA
Upstream 100 bases:
>100_bases GAGCGGGAAACGACCACGATCATCTCGTCATCCTACGAGGCGATCATGCAGCCCGATGGCTGCCTGCTTGTGACTGCAAA GAACGCATAAGGAAAAGGCC
Downstream 100 bases:
>100_bases GTGTTTCGATGAGCATGATCGAGAAACTGGCCGCAGAAATTGGCACCTTCAACCTGTCACCGGGACTGCGCGGCATTCCG GTCGGGAACGCGCCGGTCAG
Product: putative 5-oxoprolinase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 547; Mature: 546
Protein sequence:
>547_residues MTQKRDAIAEMRLQIMWNRLISVVEEQALTLVRTAFSTSVREAGDLSAGVFNIAGEMVAQAVTGTPGHVNAMGEAVSHFI NTIGRDNIFEGDVYITNDPWKGTGHLHDFTVVSPSFHKGSLIGFFACTAHVVDVGGRGFGPDAGEVYEEGIFIPIMKFAE RGAVNRDLINIVRNNVREADQVVGDLYSLAACNEIGHKRLLEMLAEFDIADIEDLAKFIFDHSYQATVDRIAELPAGIYR NSMRVDGYGSAIDMVVKLDVRKDEIIADFDGTSPPSPLGINVPLIYTTAYAAYGLKCSLAPEIPNNAASLKPFRIIAPEN CILNAQRPAPVAVRHVLGHFVPDTVLGAVHKMLPDTVPAEGAGALWNIHLSARPSQGRAANGFDLHRTEILMFNSGGSGA RPTLDGLNATAFPSGVHSMSVEATEHVGPVIVWRKELRNGSGGEGRQRGGLGQVVEIAPTDGHEFYFNAMFDRVENAARG REGGENGASGRAYLNDGTALNAKGRQFVPEGKRLVIELPGGGGYGKPDDRPHEAVERDRLDQYVVSK
Sequences:
>Translated_547_residues MTQKRDAIAEMRLQIMWNRLISVVEEQALTLVRTAFSTSVREAGDLSAGVFNIAGEMVAQAVTGTPGHVNAMGEAVSHFI NTIGRDNIFEGDVYITNDPWKGTGHLHDFTVVSPSFHKGSLIGFFACTAHVVDVGGRGFGPDAGEVYEEGIFIPIMKFAE RGAVNRDLINIVRNNVREADQVVGDLYSLAACNEIGHKRLLEMLAEFDIADIEDLAKFIFDHSYQATVDRIAELPAGIYR NSMRVDGYGSAIDMVVKLDVRKDEIIADFDGTSPPSPLGINVPLIYTTAYAAYGLKCSLAPEIPNNAASLKPFRIIAPEN CILNAQRPAPVAVRHVLGHFVPDTVLGAVHKMLPDTVPAEGAGALWNIHLSARPSQGRAANGFDLHRTEILMFNSGGSGA RPTLDGLNATAFPSGVHSMSVEATEHVGPVIVWRKELRNGSGGEGRQRGGLGQVVEIAPTDGHEFYFNAMFDRVENAARG REGGENGASGRAYLNDGTALNAKGRQFVPEGKRLVIELPGGGGYGKPDDRPHEAVERDRLDQYVVSK >Mature_546_residues TQKRDAIAEMRLQIMWNRLISVVEEQALTLVRTAFSTSVREAGDLSAGVFNIAGEMVAQAVTGTPGHVNAMGEAVSHFIN TIGRDNIFEGDVYITNDPWKGTGHLHDFTVVSPSFHKGSLIGFFACTAHVVDVGGRGFGPDAGEVYEEGIFIPIMKFAER GAVNRDLINIVRNNVREADQVVGDLYSLAACNEIGHKRLLEMLAEFDIADIEDLAKFIFDHSYQATVDRIAELPAGIYRN SMRVDGYGSAIDMVVKLDVRKDEIIADFDGTSPPSPLGINVPLIYTTAYAAYGLKCSLAPEIPNNAASLKPFRIIAPENC ILNAQRPAPVAVRHVLGHFVPDTVLGAVHKMLPDTVPAEGAGALWNIHLSARPSQGRAANGFDLHRTEILMFNSGGSGAR PTLDGLNATAFPSGVHSMSVEATEHVGPVIVWRKELRNGSGGEGRQRGGLGQVVEIAPTDGHEFYFNAMFDRVENAARGR EGGENGASGRAYLNDGTALNAKGRQFVPEGKRLVIELPGGGGYGKPDDRPHEAVERDRLDQYVVSK
Specific function: Unknown
COG id: COG0146
COG function: function code EQ; N-methylhydantoinase B/acetone carboxylase, alpha subunit
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the oxoprolinase family [H]
Homologues:
Organism=Homo sapiens, GI48314820, Length=554, Percent_Identity=29.2418772563177, Blast_Score=139, Evalue=9e-33, Organism=Caenorhabditis elegans, GI133901900, Length=558, Percent_Identity=28.673835125448, Blast_Score=173, Evalue=2e-43, Organism=Caenorhabditis elegans, GI133901902, Length=552, Percent_Identity=27.8985507246377, Blast_Score=152, Evalue=6e-37, Organism=Saccharomyces cerevisiae, GI6322634, Length=559, Percent_Identity=27.7280858676207, Blast_Score=155, Evalue=2e-38, Organism=Drosophila melanogaster, GI45550492, Length=567, Percent_Identity=26.1022927689594, Blast_Score=125, Evalue=1e-28,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003692 [H]
Pfam domain/function: PF02538 Hydantoinase_B [H]
EC number: NA
Molecular weight: Translated: 59065; Mature: 58934
Theoretical pI: Translated: 5.71; Mature: 5.71
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 2.4 %Met (Translated Protein) 3.1 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 2.2 %Met (Mature Protein) 2.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTQKRDAIAEMRLQIMWNRLISVVEEQALTLVRTAFSTSVREAGDLSAGVFNIAGEMVAQ CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH AVTGTPGHVNAMGEAVSHFINTIGRDNIFEGDVYITNDPWKGTGHLHDFTVVSPSFHKGS HHCCCCCCHHHHHHHHHHHHHHCCCCCEECCCEEEECCCCCCCCCCEEEEEECCCCCCCC LIGFFACTAHVVDVGGRGFGPDAGEVYEEGIFIPIMKFAERGAVNRDLINIVRNNVREAD CHHHHHHHHHHHCCCCCCCCCCHHHHHHCCEEHHHHHHHHCCCCHHHHHHHHHHHHHHHH QVVGDLYSLAACNEIGHKRLLEMLAEFDIADIEDLAKFIFDHSYQATVDRIAELPAGIYR HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCHHHHHHHHHHCCHHHHH NSMRVDGYGSAIDMVVKLDVRKDEIIADFDGTSPPSPLGINVPLIYTTAYAAYGLKCSLA CCEEECCCCCCEEEEEEEECCCCCEEEECCCCCCCCCCCCCCCEEEEHHHHHHCCEEEEC PEIPNNAASLKPFRIIAPENCILNAQRPAPVAVRHVLGHFVPDTVLGAVHKMLPDTVPAE CCCCCCCCCCCCEEEECCCCEEEECCCCCHHHHHHHHHHHCHHHHHHHHHHHCCCCCCCC GAGALWNIHLSARPSQGRAANGFDLHRTEILMFNSGGSGARPTLDGLNATAFPSGVHSMS CCCCEEEEEEECCCCCCCCCCCCCEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCEE VEATEHVGPVIVWRKELRNGSGGEGRQRGGLGQVVEIAPTDGHEFYFNAMFDRVENAARG CCHHHCCCCEEEEHHHHCCCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHCC REGGENGASGRAYLNDGTALNAKGRQFVPEGKRLVIELPGGGGYGKPDDRPHEAVERDRL CCCCCCCCCCCEEECCCCEECCCCCCCCCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHH DQYVVSK HHHHCCC >Mature Secondary Structure TQKRDAIAEMRLQIMWNRLISVVEEQALTLVRTAFSTSVREAGDLSAGVFNIAGEMVAQ CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH AVTGTPGHVNAMGEAVSHFINTIGRDNIFEGDVYITNDPWKGTGHLHDFTVVSPSFHKGS HHCCCCCCHHHHHHHHHHHHHHCCCCCEECCCEEEECCCCCCCCCCEEEEEECCCCCCCC LIGFFACTAHVVDVGGRGFGPDAGEVYEEGIFIPIMKFAERGAVNRDLINIVRNNVREAD CHHHHHHHHHHHCCCCCCCCCCHHHHHHCCEEHHHHHHHHCCCCHHHHHHHHHHHHHHHH QVVGDLYSLAACNEIGHKRLLEMLAEFDIADIEDLAKFIFDHSYQATVDRIAELPAGIYR HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCHHHHHHHHHHCCHHHHH NSMRVDGYGSAIDMVVKLDVRKDEIIADFDGTSPPSPLGINVPLIYTTAYAAYGLKCSLA CCEEECCCCCCEEEEEEEECCCCCEEEECCCCCCCCCCCCCCCEEEEHHHHHHCCEEEEC PEIPNNAASLKPFRIIAPENCILNAQRPAPVAVRHVLGHFVPDTVLGAVHKMLPDTVPAE CCCCCCCCCCCCEEEECCCCEEEECCCCCHHHHHHHHHHHCHHHHHHHHHHHCCCCCCCC GAGALWNIHLSARPSQGRAANGFDLHRTEILMFNSGGSGARPTLDGLNATAFPSGVHSMS CCCCEEEEEEECCCCCCCCCCCCCEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCEE VEATEHVGPVIVWRKELRNGSGGEGRQRGGLGQVVEIAPTDGHEFYFNAMFDRVENAARG CCHHHCCCCEEEEHHHHCCCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHCC REGGENGASGRAYLNDGTALNAKGRQFVPEGKRLVIELPGGGGYGKPDDRPHEAVERDRL CCCCCCCCCCCEEECCCCEECCCCCCCCCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHH DQYVVSK HHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 8688087 [H]