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The map label for this gene is ybaO [H]

Identifier: 190894800

GI number: 190894800

Start: 497609

End: 498076

Strand: Reverse

Name: ybaO [H]

Synonym: RHECIAT_PC0000465

Alternate gene names: 190894800

Gene position: 498076-497609 (Counterclockwise)

Preceding gene: 190894803

Following gene: 190894793

Centisome position: 45.63

GC content: 55.77

Gene sequence:

>468_bases
ATGCTTGACCAGTTCGACATCAAACTGCTTGCGGCTCTCCAGCAAAACAGCGAGACGACGCAGAGCGAGCTGTCTCAGAA
GGTCAATCTGTCTGCGACCCAATGCGCACGCCGCCTCGAAAGGCTGCGCAACGAGCAATATATCCAGAGCGTCGTGGCTA
TTCTCAACCCGGCCAAGCTGGGCTTCAGCGTCGTCGCACATACCCTCGTCAGTCTCAGGGCGCATACGGAAGGTGGAAAC
GAACGGCTCCATCGCTTCATCGAGACCGCGCCGGAGATCCTGGAGTGCTATTCGCAGACAGGCGACGCTGATTTTCTGAT
GAAAGTCATGACGCGCGATCTCGACCATCTCAGCCAATTTCTCGAAAGAATGATCCGGGTCACCGACAACCTGGCCTCAG
TCAAGTCAAGCATCGTCCTGAAAACGATCAAGAAGACAACCGCTCTGCCGCTGCAAATCGTCACGTGA

Upstream 100 bases:

>100_bases
AATTTCTGCGATTATCCTCCTTCGTTAACCGAATTATGCAGATAATCTGCGCGACATCGGTACAGTGCGCAGAAATTCAC
CTTGAATGGGAGTGTTGGCT

Downstream 100 bases:

>100_bases
GTGCGTCGCGCGGCTGCCGCCGCCTTACCTGAGATAATGGATGTGCGGACGCGAATGATAGGGGGAGGACTCGACGCGGG
ACTCGATCGAAAAGACGTCG

Product: putative AsnC family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 155; Mature: 155

Protein sequence:

>155_residues
MLDQFDIKLLAALQQNSETTQSELSQKVNLSATQCARRLERLRNEQYIQSVVAILNPAKLGFSVVAHTLVSLRAHTEGGN
ERLHRFIETAPEILECYSQTGDADFLMKVMTRDLDHLSQFLERMIRVTDNLASVKSSIVLKTIKKTTALPLQIVT

Sequences:

>Translated_155_residues
MLDQFDIKLLAALQQNSETTQSELSQKVNLSATQCARRLERLRNEQYIQSVVAILNPAKLGFSVVAHTLVSLRAHTEGGN
ERLHRFIETAPEILECYSQTGDADFLMKVMTRDLDHLSQFLERMIRVTDNLASVKSSIVLKTIKKTTALPLQIVT
>Mature_155_residues
MLDQFDIKLLAALQQNSETTQSELSQKVNLSATQCARRLERLRNEQYIQSVVAILNPAKLGFSVVAHTLVSLRAHTEGGN
ERLHRFIETAPEILECYSQTGDADFLMKVMTRDLDHLSQFLERMIRVTDNLASVKSSIVLKTIKKTTALPLQIVT

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH asnC-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI87081742, Length=152, Percent_Identity=34.2105263157895, Blast_Score=106, Evalue=7e-25,
Organism=Escherichia coli, GI1787116, Length=148, Percent_Identity=27.7027027027027, Blast_Score=74, Evalue=3e-15,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011008
- InterPro:   IPR013196
- InterPro:   IPR000485
- InterPro:   IPR019885
- InterPro:   IPR019888
- InterPro:   IPR019887
- InterPro:   IPR011991 [H]

Pfam domain/function: PF01037 AsnC_trans_reg; PF08279 HTH_11 [H]

EC number: NA

Molecular weight: Translated: 17468; Mature: 17468

Theoretical pI: Translated: 8.25; Mature: 8.25

Prosite motif: PS50956 HTH_ASNC_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLDQFDIKLLAALQQNSETTQSELSQKVNLSATQCARRLERLRNEQYIQSVVAILNPAKL
CCCHHHHHHHHHHHHCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCHHHH
GFSVVAHTLVSLRAHTEGGNERLHRFIETAPEILECYSQTGDADFLMKVMTRDLDHLSQF
HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
LERMIRVTDNLASVKSSIVLKTIKKTTALPLQIVT
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEECC
>Mature Secondary Structure
MLDQFDIKLLAALQQNSETTQSELSQKVNLSATQCARRLERLRNEQYIQSVVAILNPAKL
CCCHHHHHHHHHHHHCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCHHHH
GFSVVAHTLVSLRAHTEGGNERLHRFIETAPEILECYSQTGDADFLMKVMTRDLDHLSQF
HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
LERMIRVTDNLASVKSSIVLKTIKKTTALPLQIVT
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]