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The map label for this gene is glgBc [H]

Identifier: 190894803

GI number: 190894803

Start: 501078

End: 503288

Strand: Reverse

Name: glgBc [H]

Synonym: RHECIAT_PC0000468

Alternate gene names: 190894803

Gene position: 503288-501078 (Counterclockwise)

Preceding gene: 190894804

Following gene: 190894800

Centisome position: 46.11

GC content: 62.32

Gene sequence:

>2211_bases
ATGAATGTTGAACGCTCGGAACTTCTTTCAGGCATCGGACACGATGCCCTCTGGGCTCTGATCGACGGACGCCATGGCGA
TCCCTTCTCCATCCTTGGTCCGCACGAGGCCGGCGGCATGACGGTGGTGCGCGTCTACCTGCCGGGCGCCGACGCGGTCG
ATCTCATCGATGCGGACAGCGGCAGGGTGGTGACGCCTTTCAGCATCGCTCATCCTTCCGGCCTGTTTGCCGCCGCGACG
GCTTCGAGAATGAGCTACAGGCTGAGGATCCAATGGCCCGATGGCGAGCAGGTCACCGAGGATCCGTATAGCTTCGGTCT
TCTGCTCGGAGAACTCGACCTCCACCTGATATCCGAAGGCACCCATTACAGCCTGAGCCGGACGCTCGGCGCGGTGGCGA
TGTCGATCGACGGTATCGCAGGCGTTCGTTTCGCCGTCTGGGCGCCGAATGCCCGCCGCGTCTCGGTGGTCGGCGATTTC
AACGCCTGGGACGGGCGGCGCAATCCGATGCGGCTGAGGCAATCGGCGGGCGTCTGGGAGCTGTTCGTTCCCCGGTTGGC
GCCAGGCGAACGATATAAATTCGAGATCGTCGACGCACATGGCAACTGCCTGCCGCAAAAGGCCGATCCAGTGGCGCGCG
CCAGCGAAGCCGCCCCGTCCACCGCCTCGATCGTCGCCTCGTCGACGCCGTTTCGGTGGACCGATGACGGTTGGATGAAA
GGCCGCGACCGGCAAGCGCGGCTCGACGGTGCGATCTCGGTCTACGAGGTGCACGCTGGCTCCTGGCTTCGCGACCGGCA
GGACGGCAATAGCTATCTCGATTGGGCCGAACTCAGCCAGCGGCTGGTTCCCTATGTCCGGGACATGGGATTTACCCATA
TCGAATTGCTGCCGATCATGGAGCATCCGTTCGGCGGCTCCTGGGGCTACCAGCCGCTCGGGATGTTTGCCCCGACAGGC
CGATACGGAACGCCCGAGGATTTCGCCTATTTCGTCGACCGGTGTCATGGCGCCGGCATAGGTGTCATCCTCGATTGGGT
GCCGGCCCATTTTCCCACGGATGTCTGGGGTCTTGCCCGCTTCGACGGCAGCGCGCTCTACGAGCACGAGGATCCCCGGG
AGGGTTTTCACCGTGACTGGAACACGCTGATCTACAATCTCGGCCGCAGCGAGGTGAAAGGTTTCCTGATCGCCAGCGCG
CTCGAATGGCTCGAGCGCTACCATGTCGACGGCTTGCGCGTCGATGCCGTCGCCTCGATGCTCTATCGCGACTATAGCCG
CAACGAGGGCGAATGGATCCCCAACCGGTATGGCGGGCGCGAGAATCTGGAGGCGGTGGAATTCTTCAAGCACCTCAACA
GTATCGTTCACGAGCGTTGCCCGCATGCCATAACCATCGCCGAGGAATCGACGGCCTGGCCGGGTGTGACAAAGCCGCCG
GAGGAGGGTGGGCTCGGCTTCGATATCAAATGGAACATGGGCTGGATGCACGACAGCCTGAGTTATATCGAGAAGGATCC
CGTCTACCGGAGCTATCACCACGGCACGATGACCTTCGGCATGATCTATGCCTATTCCGAGCGTTTCATACTGCCGATTT
CCCATGACGAGGTGGTTTACGGAAAAGGCTCGCTGCTGGCGAAAATGCCGGGAGACGAATGGCAGAAATTCGCCAATCTG
CGCAGCTATCTCGCCTTCATGTGGGGCCATCCCGGCAAGAAGCTGTTGTTCATGGGAAGCGAAGTCGCCCAGCCGGGCGA
ATGGAACCACGATGCATCGGTGAGCTGGGACGTACTGGACCGGCCTGCGCATGTCGGCATTCAGCGCCTGGTGAGGGATC
TGAACGCGTTTTACGGCGACGAGCCGGCATTGCAGTTCGGCGATTTTCACCCCGAGGGCTTCGAATGGGCGACCGCCGAT
GACGCCGTCAATTCCGTTCTGGGCATGCTCCGTTTTGCCAGTGACCGCTCTTCATCCGTCCTTATCCTGTCGAATTTCAC
GCCGGTGCCGCGTTACGGCTACAGGATCGGCGTGCCGCAGGACGGCGTGTGGATCGAGCGGGTCACGACAGATGCGCGGG
AATATGGCGGCTCCGGCCTCGTCAACGGCGCGGTTTCGAGTGAATCCGTGCCGGCCCACGGCAGGCCGTTCTCCTTGGCG
CTGACACTGCCGCCGCTGGCGACGGTTTTTCTCAAGGGGCCGTCGCCGTGA

Upstream 100 bases:

>100_bases
CCTACGAAATCGCCTATGAAGCCCGCAACAGGCCGAAGTGGCTGCCGATCCCGCTCGCCGGCCTTACCGAAATCGTATCG
CGCTTAGCGGGGGTCAATGC

Downstream 100 bases:

>100_bases
TAGGAGTTTATTCAGCGTGCGGCGCCGGATGAATGAAGGGCCAAGGGCTTGCCTCGGATGCTTTTTCGATCGGAACCTCG
ATGAGAACAGGTTGGTCGAG

Product: glycogen branching enzyme

Products: NA

Alternate protein names: 1,4-alpha-D-glucan:1,4-alpha-D-glucan 6-glucosyl-transferase 2; Glycogen-branching enzyme 2; BE 2 [H]

Number of amino acids: Translated: 736; Mature: 736

Protein sequence:

>736_residues
MNVERSELLSGIGHDALWALIDGRHGDPFSILGPHEAGGMTVVRVYLPGADAVDLIDADSGRVVTPFSIAHPSGLFAAAT
ASRMSYRLRIQWPDGEQVTEDPYSFGLLLGELDLHLISEGTHYSLSRTLGAVAMSIDGIAGVRFAVWAPNARRVSVVGDF
NAWDGRRNPMRLRQSAGVWELFVPRLAPGERYKFEIVDAHGNCLPQKADPVARASEAAPSTASIVASSTPFRWTDDGWMK
GRDRQARLDGAISVYEVHAGSWLRDRQDGNSYLDWAELSQRLVPYVRDMGFTHIELLPIMEHPFGGSWGYQPLGMFAPTG
RYGTPEDFAYFVDRCHGAGIGVILDWVPAHFPTDVWGLARFDGSALYEHEDPREGFHRDWNTLIYNLGRSEVKGFLIASA
LEWLERYHVDGLRVDAVASMLYRDYSRNEGEWIPNRYGGRENLEAVEFFKHLNSIVHERCPHAITIAEESTAWPGVTKPP
EEGGLGFDIKWNMGWMHDSLSYIEKDPVYRSYHHGTMTFGMIYAYSERFILPISHDEVVYGKGSLLAKMPGDEWQKFANL
RSYLAFMWGHPGKKLLFMGSEVAQPGEWNHDASVSWDVLDRPAHVGIQRLVRDLNAFYGDEPALQFGDFHPEGFEWATAD
DAVNSVLGMLRFASDRSSSVLILSNFTPVPRYGYRIGVPQDGVWIERVTTDAREYGGSGLVNGAVSSESVPAHGRPFSLA
LTLPPLATVFLKGPSP

Sequences:

>Translated_736_residues
MNVERSELLSGIGHDALWALIDGRHGDPFSILGPHEAGGMTVVRVYLPGADAVDLIDADSGRVVTPFSIAHPSGLFAAAT
ASRMSYRLRIQWPDGEQVTEDPYSFGLLLGELDLHLISEGTHYSLSRTLGAVAMSIDGIAGVRFAVWAPNARRVSVVGDF
NAWDGRRNPMRLRQSAGVWELFVPRLAPGERYKFEIVDAHGNCLPQKADPVARASEAAPSTASIVASSTPFRWTDDGWMK
GRDRQARLDGAISVYEVHAGSWLRDRQDGNSYLDWAELSQRLVPYVRDMGFTHIELLPIMEHPFGGSWGYQPLGMFAPTG
RYGTPEDFAYFVDRCHGAGIGVILDWVPAHFPTDVWGLARFDGSALYEHEDPREGFHRDWNTLIYNLGRSEVKGFLIASA
LEWLERYHVDGLRVDAVASMLYRDYSRNEGEWIPNRYGGRENLEAVEFFKHLNSIVHERCPHAITIAEESTAWPGVTKPP
EEGGLGFDIKWNMGWMHDSLSYIEKDPVYRSYHHGTMTFGMIYAYSERFILPISHDEVVYGKGSLLAKMPGDEWQKFANL
RSYLAFMWGHPGKKLLFMGSEVAQPGEWNHDASVSWDVLDRPAHVGIQRLVRDLNAFYGDEPALQFGDFHPEGFEWATAD
DAVNSVLGMLRFASDRSSSVLILSNFTPVPRYGYRIGVPQDGVWIERVTTDAREYGGSGLVNGAVSSESVPAHGRPFSLA
LTLPPLATVFLKGPSP
>Mature_736_residues
MNVERSELLSGIGHDALWALIDGRHGDPFSILGPHEAGGMTVVRVYLPGADAVDLIDADSGRVVTPFSIAHPSGLFAAAT
ASRMSYRLRIQWPDGEQVTEDPYSFGLLLGELDLHLISEGTHYSLSRTLGAVAMSIDGIAGVRFAVWAPNARRVSVVGDF
NAWDGRRNPMRLRQSAGVWELFVPRLAPGERYKFEIVDAHGNCLPQKADPVARASEAAPSTASIVASSTPFRWTDDGWMK
GRDRQARLDGAISVYEVHAGSWLRDRQDGNSYLDWAELSQRLVPYVRDMGFTHIELLPIMEHPFGGSWGYQPLGMFAPTG
RYGTPEDFAYFVDRCHGAGIGVILDWVPAHFPTDVWGLARFDGSALYEHEDPREGFHRDWNTLIYNLGRSEVKGFLIASA
LEWLERYHVDGLRVDAVASMLYRDYSRNEGEWIPNRYGGRENLEAVEFFKHLNSIVHERCPHAITIAEESTAWPGVTKPP
EEGGLGFDIKWNMGWMHDSLSYIEKDPVYRSYHHGTMTFGMIYAYSERFILPISHDEVVYGKGSLLAKMPGDEWQKFANL
RSYLAFMWGHPGKKLLFMGSEVAQPGEWNHDASVSWDVLDRPAHVGIQRLVRDLNAFYGDEPALQFGDFHPEGFEWATAD
DAVNSVLGMLRFASDRSSSVLILSNFTPVPRYGYRIGVPQDGVWIERVTTDAREYGGSGLVNGAVSSESVPAHGRPFSLA
LTLPPLATVFLKGPSP

Specific function: Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position [H]

COG id: COG0296

COG function: function code G; 1,4-alpha-glucan branching enzyme

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the glycosyl hydrolase 13 family [H]

Homologues:

Organism=Homo sapiens, GI189458812, Length=663, Percent_Identity=26.9984917043741, Blast_Score=186, Evalue=7e-47,
Organism=Escherichia coli, GI1789839, Length=726, Percent_Identity=53.9944903581267, Blast_Score=785, Evalue=0.0,
Organism=Caenorhabditis elegans, GI17554896, Length=357, Percent_Identity=31.0924369747899, Blast_Score=171, Evalue=1e-42,
Organism=Caenorhabditis elegans, GI32564391, Length=249, Percent_Identity=34.136546184739, Blast_Score=151, Evalue=1e-36,
Organism=Saccharomyces cerevisiae, GI6320826, Length=612, Percent_Identity=25.6535947712418, Blast_Score=173, Evalue=1e-43,
Organism=Drosophila melanogaster, GI28573410, Length=623, Percent_Identity=25.8426966292135, Blast_Score=171, Evalue=2e-42,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006407
- InterPro:   IPR006048
- InterPro:   IPR013780
- InterPro:   IPR006047
- InterPro:   IPR004193
- InterPro:   IPR017853
- InterPro:   IPR013781
- InterPro:   IPR013783
- InterPro:   IPR014756 [H]

Pfam domain/function: PF00128 Alpha-amylase; PF02806 Alpha-amylase_C; PF02922 CBM_48 [H]

EC number: =2.4.1.18 [H]

Molecular weight: Translated: 81977; Mature: 81977

Theoretical pI: Translated: 5.54; Mature: 5.54

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNVERSELLSGIGHDALWALIDGRHGDPFSILGPHEAGGMTVVRVYLPGADAVDLIDADS
CCCCHHHHHHHCCCCEEEEEEECCCCCCCEEECCCCCCCEEEEEEEECCCCEEEEEECCC
GRVVTPFSIAHPSGLFAAATASRMSYRLRIQWPDGEQVTEDPYSFGLLLGELDLHLISEG
CCEEEEEECCCCCCCCHHHHHCCCEEEEEEECCCCCCCCCCCHHHEEEEEEEEEEEECCC
THYSLSRTLGAVAMSIDGIAGVRFAVWAPNARRVSVVGDFNAWDGRRNPMRLRQSAGVWE
CCEEHHHHHHHHHHCCCCCCCCEEEEECCCCCEEEEEECCCCCCCCCCHHHHHHCCCEEE
LFVPRLAPGERYKFEIVDAHGNCLPQKADPVARASEAAPSTASIVASSTPFRWTDDGWMK
ECCCCCCCCCCEEEEEEECCCCCCCCCCCCHHHHHCCCCCCCEEEECCCCCEECCCCCCC
GRDRQARLDGAISVYEVHAGSWLRDRQDGNSYLDWAELSQRLVPYVRDMGFTHIELLPIM
CCCCHHHCCCCEEEEEECCCCCHHCCCCCCCEECHHHHHHHHHHHHHHCCCCEEEEEEEE
EHPFGGSWGYQPLGMFAPTGRYGTPEDFAYFVDRCHGAGIGVILDWVPAHFPTDVWGLAR
CCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCEEEEECCCCCCCCCHHHEEE
FDGSALYEHEDPREGFHRDWNTLIYNLGRSEVKGFLIASALEWLERYHVDGLRVDAVASM
CCCCEECCCCCCHHHHHCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCEEHHHHHHH
LYRDYSRNEGEWIPNRYGGRENLEAVEFFKHLNSIVHERCPHAITIAEESTAWPGVTKPP
HHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCC
EEGGLGFDIKWNMGWMHDSLSYIEKDPVYRSYHHGTMTFGMIYAYSERFILPISHDEVVY
CCCCCEEEEEECCCCHHHHHHHHHCCCCHHHHCCCCEEEEEEEEECCCEEEEECCCCEEE
GKGSLLAKMPGDEWQKFANLRSYLAFMWGHPGKKLLFMGSEVAQPGEWNHDASVSWDVLD
CCCCEEECCCCHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCEEHHHHC
RPAHVGIQRLVRDLNAFYGDEPALQFGDFHPEGFEWATADDAVNSVLGMLRFASDRSSSV
CCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCE
LILSNFTPVPRYGYRIGVPQDGVWIERVTTDAREYGGSGLVNGAVSSESVPAHGRPFSLA
EEEECCCCCCCCCEEECCCCCCEEEEEEHHHHHHHCCCCEEECCCCCCCCCCCCCCEEEE
LTLPPLATVFLKGPSP
EECCCEEEEEEECCCC
>Mature Secondary Structure
MNVERSELLSGIGHDALWALIDGRHGDPFSILGPHEAGGMTVVRVYLPGADAVDLIDADS
CCCCHHHHHHHCCCCEEEEEEECCCCCCCEEECCCCCCCEEEEEEEECCCCEEEEEECCC
GRVVTPFSIAHPSGLFAAATASRMSYRLRIQWPDGEQVTEDPYSFGLLLGELDLHLISEG
CCEEEEEECCCCCCCCHHHHHCCCEEEEEEECCCCCCCCCCCHHHEEEEEEEEEEEECCC
THYSLSRTLGAVAMSIDGIAGVRFAVWAPNARRVSVVGDFNAWDGRRNPMRLRQSAGVWE
CCEEHHHHHHHHHHCCCCCCCCEEEEECCCCCEEEEEECCCCCCCCCCHHHHHHCCCEEE
LFVPRLAPGERYKFEIVDAHGNCLPQKADPVARASEAAPSTASIVASSTPFRWTDDGWMK
ECCCCCCCCCCEEEEEEECCCCCCCCCCCCHHHHHCCCCCCCEEEECCCCCEECCCCCCC
GRDRQARLDGAISVYEVHAGSWLRDRQDGNSYLDWAELSQRLVPYVRDMGFTHIELLPIM
CCCCHHHCCCCEEEEEECCCCCHHCCCCCCCEECHHHHHHHHHHHHHHCCCCEEEEEEEE
EHPFGGSWGYQPLGMFAPTGRYGTPEDFAYFVDRCHGAGIGVILDWVPAHFPTDVWGLAR
CCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCEEEEECCCCCCCCCHHHEEE
FDGSALYEHEDPREGFHRDWNTLIYNLGRSEVKGFLIASALEWLERYHVDGLRVDAVASM
CCCCEECCCCCCHHHHHCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCEEHHHHHHH
LYRDYSRNEGEWIPNRYGGRENLEAVEFFKHLNSIVHERCPHAITIAEESTAWPGVTKPP
HHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCC
EEGGLGFDIKWNMGWMHDSLSYIEKDPVYRSYHHGTMTFGMIYAYSERFILPISHDEVVY
CCCCCEEEEEECCCCHHHHHHHHHCCCCHHHHCCCCEEEEEEEEECCCEEEEECCCCEEE
GKGSLLAKMPGDEWQKFANLRSYLAFMWGHPGKKLLFMGSEVAQPGEWNHDASVSWDVLD
CCCCEEECCCCHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCEEHHHHC
RPAHVGIQRLVRDLNAFYGDEPALQFGDFHPEGFEWATADDAVNSVLGMLRFASDRSSSV
CCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCE
LILSNFTPVPRYGYRIGVPQDGVWIERVTTDAREYGGSGLVNGAVSSESVPAHGRPFSLA
EEEECCCCCCCCCEEECCCCCCEEEEEEHHHHHHHCCCCEEECCCCCCCCCCCCCCEEEE
LTLPPLATVFLKGPSP
EECCCEEEEEEECCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA