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The map label for this gene is agpA [H]

Identifier: 190894758

GI number: 190894758

Start: 451047

End: 452987

Strand: Reverse

Name: agpA [H]

Synonym: RHECIAT_PC0000423

Alternate gene names: 190894758

Gene position: 452987-451047 (Counterclockwise)

Preceding gene: 190894770

Following gene: 190894757

Centisome position: 41.5

GC content: 61.21

Gene sequence:

>1941_bases
ATGCCCAATGAAATTCTGTCGCGCGGTGTCAGCCGCCGCGCCGTGCTTGGCGGTATGGCCGGCGTTGCGGCGCTGTCCGT
CGCCGGTCGCGCTTTCGCTGCTCCGGGAGGCGAGGCGCCGGCGTTAGCGCAACTCGTCAAGGACGGAAAACTGCCGCCGC
TCGCCGAGCGCCTGCCGAAAAAGCCGATGGTGGTGACGCCGTTCGAAAAGGTCGGCACCTACGGCGGTACGCTGCGGCGC
GGCCTGCGCGGTTCATCGGATCACAACGGCATTCTGCGCATGGTCGGCAACCAGAGCCTCGTGCGCTGGAACCTGGAATT
CACCGCCGTGCAGCCGAACCTTGCCGAAAGCTGGGAGGTCAGTGACGACGCGACGCAATTCACCTTCCATCTGATCGAAG
GTGTACGCTGGTCCGACGGTCACCCCTTCACCGCCGATGACATCGTTTTTGCGATCGAAGACTGCGTCAAGAACACCGAG
CTCTACAGTTCGACGCCGGCGCAGCTTGCCGTCGCCGGCAAGCCCGTCACCGTCGAGAAGATCGACGATCGTACGGTGAA
ATTCACCTTCGCGGCGCCGAACGCGCTCTATCTGGAAAATCTCGCCACGCCGCTCGGCCAGCACCCGACGCTGTTTCCCA
AGCACTACTGCAGCCAGTTCCTGCCAAAGTACAACCCCAATATCGAGGCCGATGCGAAGAAGGCGGGTGTGACCAGCTGG
ACGGAGCTCTTCCGCAGCCGCTGCGGCGATATCGAAATCCCGACGCGTTGGGGCAATGTCGATAAGCCGACGCTCGATCC
CTGGGTCGTCAAGGAACCCTATGTCGGCGGCGCGACCCGCGTCGTCATGGCCCGCAATCCCTATTTCTGGCAGGTGGATA
CATCGGGCAACCAGCTTCCCTATATCGACGAGATCAACTTCGGCATTTCGCAGGATGTGGAATCGCTGATGCTGAACGTC
ATCTCCGGAAAGATCGACATTCAGGAGCGCCACATCAGCGTGCTCGCCAACAAGCCGACGTTGTCCCAGAACATGCAGAA
GGGCGACTACCGCCTGCTGACGCTCGTGCCTTCCGCCTCGCAGCAGTGCCAGATCTACTTCAACATCACCCACAAAGATC
CTGCCATGCGCAAGATGTTTGCCGATAAATCGTTCCGGCAGGCGCTTTCGATCGGCATCAATCGTCAGGAACTCATCGAC
ATCGTCTATTTCGGGCAGAGCGAGCCTTATCAGGCCGGACCACGCCCCACCCATCCCTGGTATCACGAAAAATATGCGCG
CCAATTCACCGAATACGATCCTGACAAGGCAGGCGCGATGCTGGACCAGGCCGGCTACAAGAAGGGTGGCGATGGCATGC
GCCTTCGGCCGGACGGGCAGAAGGTGTTCTTCTCGATCGACGTCATTCCAACGCTCTATCCCGATCTCGTCGATGCGCTC
GAGCTGGTGAAGACGCATTGGGCCCAAATCGGCGTCGACATGAAGGTCAACACGATCGAGCGGGCGCTCTATTATACCCG
CGGCGACGACAACGCCCACGACGCGGCGGTGTGGCCGGGACCCGGCGGCCTCGATCCGATGCTCGATCCGCGCGATTTCT
TCGCCTTCCATCCGCAGGGCTCGCGCTACGCCATTCCGTGGACGCTCTGGTACACTTCCAACGGTGCACGTGGTGAAGAG
CCGCCGGAAAGCCAGAAGAAGCGCATGAAGCTCTTCGACGAGGCGCGTTCGACCGCCGATCTCGACAAGCGTGGCGCGAT
CATGAAGCAGATCTTCGATATCGCGGCGGAAGAATTCGAGACGGTTGGGCTTTGCCTTGCCGTGGGTGGCTTCGGCATCA
TCCGCAACAATCTGCGCAATGTTCCCGAGAAGCAGCCGGACAGCTGGTCCTGGCCCAATCCGGGGCCTGCGATGCCGCAG
CAGTTCACCTTCACGAGCTGA

Upstream 100 bases:

>100_bases
GTTTCGTCCGCAGCGCCGAGGAGGGCGCGAAACGGCAGGTTGGGAGCCCGCCGCACCAGCCGGTACAAGAGTTGCGCCGG
CCCAAACAGGGAGGAACTCG

Downstream 100 bases:

>100_bases
TTTTGATCGAGCGCCGTACCGACGGTACGGCGCTTTCTTCGGTTCGCCTTCAAAGATGCCTTGCCGGCGCTGATCGCCGA
CAGGGCCGGAGGGCGGCGTT

Product: putative oligopeptide ABC transporter substrate-binding protein

Products: ADP; phosphate; dipeptides [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 646; Mature: 645

Protein sequence:

>646_residues
MPNEILSRGVSRRAVLGGMAGVAALSVAGRAFAAPGGEAPALAQLVKDGKLPPLAERLPKKPMVVTPFEKVGTYGGTLRR
GLRGSSDHNGILRMVGNQSLVRWNLEFTAVQPNLAESWEVSDDATQFTFHLIEGVRWSDGHPFTADDIVFAIEDCVKNTE
LYSSTPAQLAVAGKPVTVEKIDDRTVKFTFAAPNALYLENLATPLGQHPTLFPKHYCSQFLPKYNPNIEADAKKAGVTSW
TELFRSRCGDIEIPTRWGNVDKPTLDPWVVKEPYVGGATRVVMARNPYFWQVDTSGNQLPYIDEINFGISQDVESLMLNV
ISGKIDIQERHISVLANKPTLSQNMQKGDYRLLTLVPSASQQCQIYFNITHKDPAMRKMFADKSFRQALSIGINRQELID
IVYFGQSEPYQAGPRPTHPWYHEKYARQFTEYDPDKAGAMLDQAGYKKGGDGMRLRPDGQKVFFSIDVIPTLYPDLVDAL
ELVKTHWAQIGVDMKVNTIERALYYTRGDDNAHDAAVWPGPGGLDPMLDPRDFFAFHPQGSRYAIPWTLWYTSNGARGEE
PPESQKKRMKLFDEARSTADLDKRGAIMKQIFDIAAEEFETVGLCLAVGGFGIIRNNLRNVPEKQPDSWSWPNPGPAMPQ
QFTFTS

Sequences:

>Translated_646_residues
MPNEILSRGVSRRAVLGGMAGVAALSVAGRAFAAPGGEAPALAQLVKDGKLPPLAERLPKKPMVVTPFEKVGTYGGTLRR
GLRGSSDHNGILRMVGNQSLVRWNLEFTAVQPNLAESWEVSDDATQFTFHLIEGVRWSDGHPFTADDIVFAIEDCVKNTE
LYSSTPAQLAVAGKPVTVEKIDDRTVKFTFAAPNALYLENLATPLGQHPTLFPKHYCSQFLPKYNPNIEADAKKAGVTSW
TELFRSRCGDIEIPTRWGNVDKPTLDPWVVKEPYVGGATRVVMARNPYFWQVDTSGNQLPYIDEINFGISQDVESLMLNV
ISGKIDIQERHISVLANKPTLSQNMQKGDYRLLTLVPSASQQCQIYFNITHKDPAMRKMFADKSFRQALSIGINRQELID
IVYFGQSEPYQAGPRPTHPWYHEKYARQFTEYDPDKAGAMLDQAGYKKGGDGMRLRPDGQKVFFSIDVIPTLYPDLVDAL
ELVKTHWAQIGVDMKVNTIERALYYTRGDDNAHDAAVWPGPGGLDPMLDPRDFFAFHPQGSRYAIPWTLWYTSNGARGEE
PPESQKKRMKLFDEARSTADLDKRGAIMKQIFDIAAEEFETVGLCLAVGGFGIIRNNLRNVPEKQPDSWSWPNPGPAMPQ
QFTFTS
>Mature_645_residues
PNEILSRGVSRRAVLGGMAGVAALSVAGRAFAAPGGEAPALAQLVKDGKLPPLAERLPKKPMVVTPFEKVGTYGGTLRRG
LRGSSDHNGILRMVGNQSLVRWNLEFTAVQPNLAESWEVSDDATQFTFHLIEGVRWSDGHPFTADDIVFAIEDCVKNTEL
YSSTPAQLAVAGKPVTVEKIDDRTVKFTFAAPNALYLENLATPLGQHPTLFPKHYCSQFLPKYNPNIEADAKKAGVTSWT
ELFRSRCGDIEIPTRWGNVDKPTLDPWVVKEPYVGGATRVVMARNPYFWQVDTSGNQLPYIDEINFGISQDVESLMLNVI
SGKIDIQERHISVLANKPTLSQNMQKGDYRLLTLVPSASQQCQIYFNITHKDPAMRKMFADKSFRQALSIGINRQELIDI
VYFGQSEPYQAGPRPTHPWYHEKYARQFTEYDPDKAGAMLDQAGYKKGGDGMRLRPDGQKVFFSIDVIPTLYPDLVDALE
LVKTHWAQIGVDMKVNTIERALYYTRGDDNAHDAAVWPGPGGLDPMLDPRDFFAFHPQGSRYAIPWTLWYTSNGARGEEP
PESQKKRMKLFDEARSTADLDKRGAIMKQIFDIAAEEFETVGLCLAVGGFGIIRNNLRNVPEKQPDSWSWPNPGPAMPQQ
FTFTS

Specific function: Probably involved in an alpha-galactosides intake transport system [H]

COG id: COG0747

COG function: function code E; ABC-type dipeptide transport system, periplasmic component

Gene ontology:

Cell location: Periplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bacterial solute-binding protein 5 family [H]

Homologues:

Organism=Escherichia coli, GI1789966, Length=514, Percent_Identity=25.4863813229572, Blast_Score=110, Evalue=2e-25,
Organism=Escherichia coli, GI1787495, Length=360, Percent_Identity=27.5, Blast_Score=79, Evalue=8e-16,
Organism=Escherichia coli, GI1787551, Length=355, Percent_Identity=24.5070422535211, Blast_Score=74, Evalue=3e-14,
Organism=Escherichia coli, GI1789397, Length=117, Percent_Identity=36.7521367521368, Blast_Score=63, Evalue=7e-11,

Paralogues:

None

Copy number: 660 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 2980 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 40 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000914 [H]

Pfam domain/function: PF00496 SBP_bac_5 [H]

EC number: NA

Molecular weight: Translated: 72047; Mature: 71915

Theoretical pI: Translated: 6.66; Mature: 6.66

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPNEILSRGVSRRAVLGGMAGVAALSVAGRAFAAPGGEAPALAQLVKDGKLPPLAERLPK
CCHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCCHHHHHCCC
KPMVVTPFEKVGTYGGTLRRGLRGSSDHNGILRMVGNQSLVRWNLEFTAVQPNLAESWEV
CCEEECCHHHHCCCCHHHHHCCCCCCCCCCEEEEECCCEEEEEEEEEEEECCCCCCCCCC
SDDATQFTFHLIEGVRWSDGHPFTADDIVFAIEDCVKNTELYSSTPAQLAVAGKPVTVEK
CCCHHHHHHHHHCCCEECCCCCCCHHHHHHHHHHHHCCCHHCCCCCCEEEECCCCEEEEE
IDDRTVKFTFAAPNALYLENLATPLGQHPTLFPKHYCSQFLPKYNPNIEADAKKAGVTSW
CCCCEEEEEEECCCHHHHHHHHCCCCCCCCCCHHHHHHHHCCCCCCCCCCCHHHCCCHHH
TELFRSRCGDIEIPTRWGNVDKPTLDPWVVKEPYVGGATRVVMARNPYFWQVDTSGNQLP
HHHHHHHCCCEECCCCCCCCCCCCCCCCEECCCCCCCCEEEEEECCCEEEEEECCCCCCC
YIDEINFGISQDVESLMLNVISGKIDIQERHISVLANKPTLSQNMQKGDYRLLTLVPSAS
CHHCCCCCHHHHHHHHHHHHHCCCEEEEEHEEEEEECCCCHHHCCCCCCEEEEEEECCCC
QQCQIYFNITHKDPAMRKMFADKSFRQALSIGINRQELIDIVYFGQSEPYQAGPRPTHPW
CCEEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCHHHEEEEEEECCCCCCCCCCCCCCCH
YHEKYARQFTEYDPDKAGAMLDQAGYKKGGDGMRLRPDGQKVFFSIDVIPTLYPDLVDAL
HHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCCCEECCCCCEEEEEEECHHHHHHHHHHHH
ELVKTHWAQIGVDMKVNTIERALYYTRGDDNAHDAAVWPGPGGLDPMLDPRDFFAFHPQG
HHHHHHHHHHCCCEEHHHHHHHHEEECCCCCCCCCEECCCCCCCCCCCCCCHHEEECCCC
SRYAIPWTLWYTSNGARGEEPPESQKKRMKLFDEARSTADLDKRGAIMKQIFDIAAEEFE
CEEEEEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHH
TVGLCLAVGGFGIIRNNLRNVPEKQPDSWSWPNPGPAMPQQFTFTS
HHHHHHHHCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure 
PNEILSRGVSRRAVLGGMAGVAALSVAGRAFAAPGGEAPALAQLVKDGKLPPLAERLPK
CHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCCHHHHHCCC
KPMVVTPFEKVGTYGGTLRRGLRGSSDHNGILRMVGNQSLVRWNLEFTAVQPNLAESWEV
CCEEECCHHHHCCCCHHHHHCCCCCCCCCCEEEEECCCEEEEEEEEEEEECCCCCCCCCC
SDDATQFTFHLIEGVRWSDGHPFTADDIVFAIEDCVKNTELYSSTPAQLAVAGKPVTVEK
CCCHHHHHHHHHCCCEECCCCCCCHHHHHHHHHHHHCCCHHCCCCCCEEEECCCCEEEEE
IDDRTVKFTFAAPNALYLENLATPLGQHPTLFPKHYCSQFLPKYNPNIEADAKKAGVTSW
CCCCEEEEEEECCCHHHHHHHHCCCCCCCCCCHHHHHHHHCCCCCCCCCCCHHHCCCHHH
TELFRSRCGDIEIPTRWGNVDKPTLDPWVVKEPYVGGATRVVMARNPYFWQVDTSGNQLP
HHHHHHHCCCEECCCCCCCCCCCCCCCCEECCCCCCCCEEEEEECCCEEEEEECCCCCCC
YIDEINFGISQDVESLMLNVISGKIDIQERHISVLANKPTLSQNMQKGDYRLLTLVPSAS
CHHCCCCCHHHHHHHHHHHHHCCCEEEEEHEEEEEECCCCHHHCCCCCCEEEEEEECCCC
QQCQIYFNITHKDPAMRKMFADKSFRQALSIGINRQELIDIVYFGQSEPYQAGPRPTHPW
CCEEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCHHHEEEEEEECCCCCCCCCCCCCCCH
YHEKYARQFTEYDPDKAGAMLDQAGYKKGGDGMRLRPDGQKVFFSIDVIPTLYPDLVDAL
HHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCCCEECCCCCEEEEEEECHHHHHHHHHHHH
ELVKTHWAQIGVDMKVNTIERALYYTRGDDNAHDAAVWPGPGGLDPMLDPRDFFAFHPQG
HHHHHHHHHHCCCEEHHHHHHHHEEECCCCCCCCCEECCCCCCCCCCCCCCHHEEECCCC
SRYAIPWTLWYTSNGARGEEPPESQKKRMKLFDEARSTADLDKRGAIMKQIFDIAAEEFE
CEEEEEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHH
TVGLCLAVGGFGIIRNNLRNVPEKQPDSWSWPNPGPAMPQQFTFTS
HHHHHHHHCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; dipeptides [Periplasm]; H2O [C]

Specific reaction: ATP + dipeptides [Periplasm] + H2O = ADP + phosphate + dipeptides [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9791127; 11481431 [H]