| Definition | Rhizobium etli CIAT 652 plasmid pC, complete sequence. |
|---|---|
| Accession | NC_010997 |
| Length | 1,091,523 |
Click here to switch to the map view.
The map label for this gene is 190894770
Identifier: 190894770
GI number: 190894770
Start: 464456
End: 465706
Strand: Reverse
Name: 190894770
Synonym: RHECIAT_PC0000435
Alternate gene names: NA
Gene position: 465706-464456 (Counterclockwise)
Preceding gene: 190894772
Following gene: 190894758
Centisome position: 42.67
GC content: 65.95
Gene sequence:
>1251_bases ATGTCACAGCGAGCAGGCAGCGCGGATCTTCCCCTCCACGGGGGACGGGTGCCGCATTGGCTCGGCGAGCGGATGACGCG GCTCGGCACGCTGATCACCGAGGCGATCGTTCATCATTATGGCCGCGATGAGTTTCTGCGCCGGCTCGCCCACCCCTTCT GGTTCCAGTCCTTCGGCGCCGTCATGGGCATGGACTGGCATTCCTCCGGTATCACCACAAGCGTTCTCGGAGCCTTGAAG CGCGGGCTGAAACCGCGCGCTGGCGAACTCGGCCTGCATGTCTGCGGCGGACGCGGCCAGCACTCGCGCAAGACGCCGCA GGAGCTCGTCTCGATCGGCGAGCGCATCGGCCTCGACGGGGAGGGGCTGGCGACGACCAGCCGTCTGATCGCCAAGGTCG ACAGTGCCGCCCTTCAGGACGGGTTCGACCTTTATCTCCACGGCTTTATCGTTGCCGACGATGGTCATTGGGTGGTCGTA CAGCAGGGCATGAATGGCGACCGCCGGCAGGCTCGCCGCTATCATTGGCTATCCGAAGGGCTGGAGAGTTTCGTCGATTC GCCGCATGCGGCGATCGAGGGACGGAACCAGGGCGAGATCGTCAATCTCGCCGACCGGCGCGCCGAGCGCTCACGGCGAG GGCAGCTCGATCTGCTGGCCACCCTCGGTCCCGACAGGATCGTCCGTGAGGCAGCCGCGCTGCAACGTGCCGAGCAACCG GAGCCCGAGCCCGCCGACCAGCCGATGCTGCCGCATCTGATCATGCCCGCTCATCACGATGTCCGCGAGAGCGATGTCAA TATGCGCCGCCTGCACGGAAATCTCGCCGCGGCGGCCGATCGCGGACCAGCTGATTTTCAGGAACTGCTGCTCGTCCCCG GTGTCGGCGCTCGCACAGTGAAGGCGCTGGCAATGGTGGCGGAAGTCGTCCACGGCGCGCCCTGTCGCTTCTCCGACCCG GCGCGCTTCTCGATCGCCCACGGCGGCAAGGACCGCCACCCTTTTCCTGTCCCGCTCAAGGTTTATGACGAGACGATCGG CGTAATGAAATCGGCAGTGCTGAAGGGCAGGCTTGGACGGGAGGAGGAGTTGCAGGCGCTTAAGCGCCTCGACGAACAAT CCCGGCAGATGGAACGCTACGTGACCGGCCCAGACCTCAAGGAGATCATCGCCGGCGAGTTCCGTCAATCCGCCGATTTC GGCGGCCGCAGCGTCTTCGGCTGGGAGCCGCCGCCGGCCGCTGACGATTGA
Upstream 100 bases:
>100_bases ACGCGGTCATGGTTGCCTCGGCCTTTTGACTGAAAGCAAACGCCCGGGACTTTCCCGAGTTCCCGATCGCCGCCGGCGAT GGAAAATGTAAGGAAAAGAA
Downstream 100 bases:
>100_bases TCTCAGTGACCGTCGGGCGGGACGGCTTCGGCCGGCACCGTCTCCTTCAGGTTCTTCCGGTGGAAGATGAAGAGACCGGC AAAGACGATGATGGCGGCGC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 416; Mature: 415
Protein sequence:
>416_residues MSQRAGSADLPLHGGRVPHWLGERMTRLGTLITEAIVHHYGRDEFLRRLAHPFWFQSFGAVMGMDWHSSGITTSVLGALK RGLKPRAGELGLHVCGGRGQHSRKTPQELVSIGERIGLDGEGLATTSRLIAKVDSAALQDGFDLYLHGFIVADDGHWVVV QQGMNGDRRQARRYHWLSEGLESFVDSPHAAIEGRNQGEIVNLADRRAERSRRGQLDLLATLGPDRIVREAAALQRAEQP EPEPADQPMLPHLIMPAHHDVRESDVNMRRLHGNLAAAADRGPADFQELLLVPGVGARTVKALAMVAEVVHGAPCRFSDP ARFSIAHGGKDRHPFPVPLKVYDETIGVMKSAVLKGRLGREEELQALKRLDEQSRQMERYVTGPDLKEIIAGEFRQSADF GGRSVFGWEPPPAADD
Sequences:
>Translated_416_residues MSQRAGSADLPLHGGRVPHWLGERMTRLGTLITEAIVHHYGRDEFLRRLAHPFWFQSFGAVMGMDWHSSGITTSVLGALK RGLKPRAGELGLHVCGGRGQHSRKTPQELVSIGERIGLDGEGLATTSRLIAKVDSAALQDGFDLYLHGFIVADDGHWVVV QQGMNGDRRQARRYHWLSEGLESFVDSPHAAIEGRNQGEIVNLADRRAERSRRGQLDLLATLGPDRIVREAAALQRAEQP EPEPADQPMLPHLIMPAHHDVRESDVNMRRLHGNLAAAADRGPADFQELLLVPGVGARTVKALAMVAEVVHGAPCRFSDP ARFSIAHGGKDRHPFPVPLKVYDETIGVMKSAVLKGRLGREEELQALKRLDEQSRQMERYVTGPDLKEIIAGEFRQSADF GGRSVFGWEPPPAADD >Mature_415_residues SQRAGSADLPLHGGRVPHWLGERMTRLGTLITEAIVHHYGRDEFLRRLAHPFWFQSFGAVMGMDWHSSGITTSVLGALKR GLKPRAGELGLHVCGGRGQHSRKTPQELVSIGERIGLDGEGLATTSRLIAKVDSAALQDGFDLYLHGFIVADDGHWVVVQ QGMNGDRRQARRYHWLSEGLESFVDSPHAAIEGRNQGEIVNLADRRAERSRRGQLDLLATLGPDRIVREAAALQRAEQPE PEPADQPMLPHLIMPAHHDVRESDVNMRRLHGNLAAAADRGPADFQELLLVPGVGARTVKALAMVAEVVHGAPCRFSDPA RFSIAHGGKDRHPFPVPLKVYDETIGVMKSAVLKGRLGREEELQALKRLDEQSRQMERYVTGPDLKEIIAGEFRQSADFG GRSVFGWEPPPAADD
Specific function: Unknown
COG id: COG1415
COG function: function code S; Uncharacterized conserved protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 45832; Mature: 45700
Theoretical pI: Translated: 7.21; Mature: 7.21
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 2.6 %Met (Translated Protein) 3.1 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 2.4 %Met (Mature Protein) 2.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSQRAGSADLPLHGGRVPHWLGERMTRLGTLITEAIVHHYGRDEFLRRLAHPFWFQSFGA CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCHHHHHHHHH VMGMDWHSSGITTSVLGALKRGLKPRAGELGLHVCGGRGQHSRKTPQELVSIGERIGLDG HHCCCCCCCCHHHHHHHHHHHCCCCCCCCCCEEEECCCCCCCCCCHHHHHHHHHHCCCCC EGLATTSRLIAKVDSAALQDGFDLYLHGFIVADDGHWVVVQQGMNGDRRQARRYHWLSEG CCHHHHHHHHHHHHHHHHHCCCEEEEEEEEEECCCCEEEEECCCCCHHHHHHHHHHHHHH LESFVDSPHAAIEGRNQGEIVNLADRRAERSRRGQLDLLATLGPDRIVREAAALQRAEQP HHHHHCCCCHHHCCCCCCCEECHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHHHCCC EPEPADQPMLPHLIMPAHHDVRESDVNMRRLHGNLAAAADRGPADFQELLLVPGVGARTV CCCCCCCCCCCHHCCCCCCCCHHHCCHHHHHHCCHHHHCCCCHHHHHHHHHCCCCCHHHH KALAMVAEVVHGAPCRFSDPARFSIAHGGKDRHPFPVPLKVYDETIGVMKSAVLKGRLGR HHHHHHHHHHHCCCCCCCCCCCEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCC EEELQALKRLDEQSRQMERYVTGPDLKEIIAGEFRQSADFGGRSVFGWEPPPAADD HHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCC >Mature Secondary Structure SQRAGSADLPLHGGRVPHWLGERMTRLGTLITEAIVHHYGRDEFLRRLAHPFWFQSFGA CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCHHHHHHHHH VMGMDWHSSGITTSVLGALKRGLKPRAGELGLHVCGGRGQHSRKTPQELVSIGERIGLDG HHCCCCCCCCHHHHHHHHHHHCCCCCCCCCCEEEECCCCCCCCCCHHHHHHHHHHCCCCC EGLATTSRLIAKVDSAALQDGFDLYLHGFIVADDGHWVVVQQGMNGDRRQARRYHWLSEG CCHHHHHHHHHHHHHHHHHCCCEEEEEEEEEECCCCEEEEECCCCCHHHHHHHHHHHHHH LESFVDSPHAAIEGRNQGEIVNLADRRAERSRRGQLDLLATLGPDRIVREAAALQRAEQP HHHHHCCCCHHHCCCCCCCEECHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHHHCCC EPEPADQPMLPHLIMPAHHDVRESDVNMRRLHGNLAAAADRGPADFQELLLVPGVGARTV CCCCCCCCCCCHHCCCCCCCCHHHCCHHHHHHCCHHHHCCCCHHHHHHHHHCCCCCHHHH KALAMVAEVVHGAPCRFSDPARFSIAHGGKDRHPFPVPLKVYDETIGVMKSAVLKGRLGR HHHHHHHHHHHCCCCCCCCCCCEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCC EEELQALKRLDEQSRQMERYVTGPDLKEIIAGEFRQSADFGGRSVFGWEPPPAADD HHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA