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The map label for this gene is lpsB1 [H]

Identifier: 190894687

GI number: 190894687

Start: 377401

End: 377967

Strand: Reverse

Name: lpsB1 [H]

Synonym: RHECIAT_PC0000350

Alternate gene names: 190894687

Gene position: 377967-377401 (Counterclockwise)

Preceding gene: 190894688

Following gene: 190894686

Centisome position: 34.63

GC content: 57.32

Gene sequence:

>567_bases
GTGGGTTTGAAACGGGCGGTCGATATTCTTCTGGCTGTGGTCGCGTCGGTCATCCTGTTTGTTCCGATCCTTGTCGTCGC
TCTCTGCGTTCGCATGACTTCGCCGGGCCCGATCCTCTACTGGTCCAAACGTGTCGGCCGCTTCAATCAGATCTTCCTGA
TGCCGAAATTTCGCAGCATGCGCGTCGACACGCCGACGGTTGCCACACATCTGCTCGAAAATCCCGATCGGTTTCTGACC
CCCATCGGTTCGTTTCTGCGCAAGTCCAGCCTCGACGAACTGCCGCAGCTCTGGTGCATTCTGGGGGGCAGGATGAGTTT
CGTCGGGCCTCGGCCAGCGCTCTACAATCAGTATGATCTGATCGAATTGCGGACGGCCCACGGCGTCGACAAACTCCTGC
CTGGATTGACGGGGTGGGCTCAGATCAACGGCCGCGACGAATTGCCGATTCCGGAGAAAGTGAAATTCGACGTCGAATAT
CTTCACCGGCGCTCGATCGGCTTCGATATGCGCATCCTGTTTTTGACGGCCGGGAAGGTCATCCGCCGCAAGGGAATAAA
GCATTAA

Upstream 100 bases:

>100_bases
GCGGCAACAACCGGAATTGACGCGCTGCGTTTTTTTGACGATACGGCGCGGTGGGGCGTATGGCAAAATCCCCCTTGAGG
CGGTGGAACAAGTGCGGAGC

Downstream 100 bases:

>100_bases
GTTACCTACTTCTGATAGATAAGTGCCGCGGAAGACCTTGGTTTCCGATTATTTCAGTTGCGCTCGTTGTAGAAAATGAC
AAGAAGGGGATTGTCTGATT

Product: galactosyltransferase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 188; Mature: 187

Protein sequence:

>188_residues
MGLKRAVDILLAVVASVILFVPILVVALCVRMTSPGPILYWSKRVGRFNQIFLMPKFRSMRVDTPTVATHLLENPDRFLT
PIGSFLRKSSLDELPQLWCILGGRMSFVGPRPALYNQYDLIELRTAHGVDKLLPGLTGWAQINGRDELPIPEKVKFDVEY
LHRRSIGFDMRILFLTAGKVIRRKGIKH

Sequences:

>Translated_188_residues
MGLKRAVDILLAVVASVILFVPILVVALCVRMTSPGPILYWSKRVGRFNQIFLMPKFRSMRVDTPTVATHLLENPDRFLT
PIGSFLRKSSLDELPQLWCILGGRMSFVGPRPALYNQYDLIELRTAHGVDKLLPGLTGWAQINGRDELPIPEKVKFDVEY
LHRRSIGFDMRILFLTAGKVIRRKGIKH
>Mature_187_residues
GLKRAVDILLAVVASVILFVPILVVALCVRMTSPGPILYWSKRVGRFNQIFLMPKFRSMRVDTPTVATHLLENPDRFLTP
IGSFLRKSSLDELPQLWCILGGRMSFVGPRPALYNQYDLIELRTAHGVDKLLPGLTGWAQINGRDELPIPEKVKFDVEYL
HRRSIGFDMRILFLTAGKVIRRKGIKH

Specific function: Slime polysaccharide colanic acid biosynthesis. [C]

COG id: COG2148

COG function: function code M; Sugar transferases involved in lipopolysaccharide synthesis

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bacterial sugar transferase family [H]

Homologues:

Organism=Escherichia coli, GI1788360, Length=190, Percent_Identity=44.2105263157895, Blast_Score=125, Evalue=2e-30,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003362
- InterPro:   IPR017475
- InterPro:   IPR017473 [H]

Pfam domain/function: PF02397 Bac_transf [H]

EC number: NA

Molecular weight: Translated: 21366; Mature: 21235

Theoretical pI: Translated: 10.84; Mature: 10.84

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGLKRAVDILLAVVASVILFVPILVVALCVRMTSPGPILYWSKRVGRFNQIFLMPKFRSM
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECHHCCCCEEEEEEECCCCC
RVDTPTVATHLLENPDRFLTPIGSFLRKSSLDELPQLWCILGGRMSFVGPRPALYNQYDL
CCCCHHHHHHHHCCCHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCHH
IELRTAHGVDKLLPGLTGWAQINGRDELPIPEKVKFDVEYLHRRSIGFDMRILFLTAGKV
EEEHHHCCHHHHHCCCCCEEEECCCCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHH
IRRKGIKH
HHHCCCCC
>Mature Secondary Structure 
GLKRAVDILLAVVASVILFVPILVVALCVRMTSPGPILYWSKRVGRFNQIFLMPKFRSM
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECHHCCCCEEEEEEECCCCC
RVDTPTVATHLLENPDRFLTPIGSFLRKSSLDELPQLWCILGGRMSFVGPRPALYNQYDL
CCCCHHHHHHHHCCCHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCHH
IELRTAHGVDKLLPGLTGWAQINGRDELPIPEKVKFDVEYLHRRSIGFDMRILFLTAGKV
EEEHHHCCHHHHHCCCCCEEEECCCCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHH
IRRKGIKH
HHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8759852; 9097040; 9278503 [H]