| Definition | Rhizobium etli CIAT 652 plasmid pC, complete sequence. |
|---|---|
| Accession | NC_010997 |
| Length | 1,091,523 |
Click here to switch to the map view.
The map label for this gene is 190894577
Identifier: 190894577
GI number: 190894577
Start: 239109
End: 240023
Strand: Reverse
Name: 190894577
Synonym: RHECIAT_PC0000239
Alternate gene names: NA
Gene position: 240023-239109 (Counterclockwise)
Preceding gene: 190894580
Following gene: 190894574
Centisome position: 21.99
GC content: 61.75
Gene sequence:
>915_bases ATGACCACTCACCGCTTCATTCCCACGCGCTTTCACAATGTTCTCGGCTCACTTGCGCCGGCGCTGCATATTGCCGACGG CGATACCGTCGTCACTGACACGCTCGACGCCATCGGCTTTGACAAGGACGGCATCCGGCGGACATCCGGTCCGAACCCGA TGAACGGCCCGATCTTCGTGGATGGCGCCGAACCCGGAGATGCGCTGAAGGTCGAGATCATCAGCATGGTTCCGACCAGG GGCACCGGCTTTACTCGGAGCATCGTCGCGGCCAATGTTATCGATCCCGAATCGGTTCGCGACCTGCCGCCGCGGGACAT GGCGATCTGGTCCATCGACCGGGAAGCACTGACCGTGCGGCTGTCCGAGCCGGTTGCCGGCCTCGAAAATTTCATTCTGC CGCTCGCCCCGATGATCGGCTGTTTCGGGGTGGCGCCCAGCCTCGGTCAGGCGATCTCGACGGCGACCAGCGGCGAATAT GGCGGCAACATGGATTATCGCCTGTTCGGCCCCGGCACGACCGTTCGTTTTCCGGTATCGGCTCCAGGCGCGCTGTTCTT TCTCGGCGATTGCCATGCTGTGCAGGGCGATGGTGAGATCGTCGGCACCGGCGTCGAGACCACTTTCGAAGTCACGGTTC GGCTGACGGTGGAAAAACAGGCCGGACTGGTCTGGCCACGCGGAGAAACTGCTGAAGACATCTTCACCATCGGCAATGCC CGTCCCCTCGATCAGGCGCTTCAGCATGCCACCAGTGAAATGCTGAATTGGCTGGCCTCGGATTACGGCCTCGACAGAAC GGCGGCAAGCCATCTGCTGGGCCAGGTGGTGCGTTATGATGTCGGCAATGTCTTCGATCCGGCCTATACGATGGCCTGTC GTGTCGCGAAGAAATGGCTGGTCCGCCGATCGTGA
Upstream 100 bases:
>100_bases GCGTGTTGGCTTCCCAGGTAATCTCTGATCTAGTCTGGACCGTCCGCCGGGCAGACCAGCCGCGGCCCTAGCATTCGAAA CGAGCGAGAGCTGTATTCTC
Downstream 100 bases:
>100_bases CGAGCCGGCATCTGCTTCAGTCGTATCGCGACAGAAAGCCGGAAACGGTCGCCAGGCAAAGCTGCTTTTCCTCGACATGC GGCATGTGGCTGGAATTTTC
Product: putative acetamidase/formamidase
Products: NA
Alternate protein names: Acetamidase/Formamidase Family Protein; Formamidase; Acetamidase; Amidase; Acetamidase/Formamidase Family; Acetamidase/Formamidase Protein; Amidase-Related Protein; Amidae; Formamidase/Acetamidase; Transcriptional Regulatory Protein
Number of amino acids: Translated: 304; Mature: 303
Protein sequence:
>304_residues MTTHRFIPTRFHNVLGSLAPALHIADGDTVVTDTLDAIGFDKDGIRRTSGPNPMNGPIFVDGAEPGDALKVEIISMVPTR GTGFTRSIVAANVIDPESVRDLPPRDMAIWSIDREALTVRLSEPVAGLENFILPLAPMIGCFGVAPSLGQAISTATSGEY GGNMDYRLFGPGTTVRFPVSAPGALFFLGDCHAVQGDGEIVGTGVETTFEVTVRLTVEKQAGLVWPRGETAEDIFTIGNA RPLDQALQHATSEMLNWLASDYGLDRTAASHLLGQVVRYDVGNVFDPAYTMACRVAKKWLVRRS
Sequences:
>Translated_304_residues MTTHRFIPTRFHNVLGSLAPALHIADGDTVVTDTLDAIGFDKDGIRRTSGPNPMNGPIFVDGAEPGDALKVEIISMVPTR GTGFTRSIVAANVIDPESVRDLPPRDMAIWSIDREALTVRLSEPVAGLENFILPLAPMIGCFGVAPSLGQAISTATSGEY GGNMDYRLFGPGTTVRFPVSAPGALFFLGDCHAVQGDGEIVGTGVETTFEVTVRLTVEKQAGLVWPRGETAEDIFTIGNA RPLDQALQHATSEMLNWLASDYGLDRTAASHLLGQVVRYDVGNVFDPAYTMACRVAKKWLVRRS >Mature_303_residues TTHRFIPTRFHNVLGSLAPALHIADGDTVVTDTLDAIGFDKDGIRRTSGPNPMNGPIFVDGAEPGDALKVEIISMVPTRG TGFTRSIVAANVIDPESVRDLPPRDMAIWSIDREALTVRLSEPVAGLENFILPLAPMIGCFGVAPSLGQAISTATSGEYG GNMDYRLFGPGTTVRFPVSAPGALFFLGDCHAVQGDGEIVGTGVETTFEVTVRLTVEKQAGLVWPRGETAEDIFTIGNAR PLDQALQHATSEMLNWLASDYGLDRTAASHLLGQVVRYDVGNVFDPAYTMACRVAKKWLVRRS
Specific function: Unknown
COG id: COG2421
COG function: function code C; Predicted acetamidase/formamidase
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 32642; Mature: 32510
Theoretical pI: Translated: 4.87; Mature: 4.87
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 2.6 %Met (Translated Protein) 3.6 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 2.3 %Met (Mature Protein) 3.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTTHRFIPTRFHNVLGSLAPALHIADGDTVVTDTLDAIGFDKDGIRRTSGPNPMNGPIFV CCCCCCCHHHHHHHHHHHCCEEEECCCCEEEEHHHHHCCCCCCCCCCCCCCCCCCCCEEE DGAEPGDALKVEIISMVPTRGTGFTRSIVAANVIDPESVRDLPPRDMAIWSIDREALTVR ECCCCCCEEEEEEEEECCCCCCCCCHHHHEECCCCHHHHCCCCCCCEEEEEECCCEEEEE LSEPVAGLENFILPLAPMIGCFGVAPSLGQAISTATSGEYGGNMDYRLFGPGTTVRFPVS ECCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCCCCCCCEEEECCCCEEEEECC APGALFFLGDCHAVQGDGEIVGTGVETTFEVTVRLTVEKQAGLVWPRGETAEDIFTIGNA CCCEEEEEECCEEECCCCCEEECCCCEEEEEEEEEEEECCCCEECCCCCCHHHHEECCCC RPLDQALQHATSEMLNWLASDYGLDRTAASHLLGQVVRYDVGNVFDPAYTMACRVAKKWL CCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHH VRRS HCCC >Mature Secondary Structure TTHRFIPTRFHNVLGSLAPALHIADGDTVVTDTLDAIGFDKDGIRRTSGPNPMNGPIFV CCCCCCHHHHHHHHHHHCCEEEECCCCEEEEHHHHHCCCCCCCCCCCCCCCCCCCCEEE DGAEPGDALKVEIISMVPTRGTGFTRSIVAANVIDPESVRDLPPRDMAIWSIDREALTVR ECCCCCCEEEEEEEEECCCCCCCCCHHHHEECCCCHHHHCCCCCCCEEEEEECCCEEEEE LSEPVAGLENFILPLAPMIGCFGVAPSLGQAISTATSGEYGGNMDYRLFGPGTTVRFPVS ECCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCCCCCCCEEEECCCCEEEEECC APGALFFLGDCHAVQGDGEIVGTGVETTFEVTVRLTVEKQAGLVWPRGETAEDIFTIGNA CCCEEEEEECCEEECCCCCEEECCCCEEEEEEEEEEEECCCCEECCCCCCHHHHEECCCC RPLDQALQHATSEMLNWLASDYGLDRTAASHLLGQVVRYDVGNVFDPAYTMACRVAKKWL CCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHH VRRS HCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA