BacMap

Definition	Rhizobium etli CIAT 652 plasmid pC, complete sequence.
Accession	NC_010997
Length	1,091,523

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The map label for this gene is cbpA [H]

Identifier: 190894558

GI number: 190894558

Start: 219907

End: 220821

Strand: Reverse

Name: cbpA [H]

Synonym: RHECIAT_PC0000220

Alternate gene names: 190894558

Gene position: 220821-219907 (Counterclockwise)

Preceding gene: 190894559

Following gene: 190894557

Centisome position: 20.23

GC content: 62.95

Gene sequence:

>915_bases
ATGAGCCAGGATCCCTACGAGCTTCTGGGCGTGAAGCGGGATGCGACGCAGAAGGAGATTCAGAGCGCGTTCCGCAAGCT
CGCCAAGAAGCTTCACCCCGACCTTAACCCCGGCGACAAAAAGGCCGAGGACCGATTTAAGGATATTTCGACCGCTTACG
AGATTTTGAGCGACGAACAGAAGCGGGGACGTTTCGACCGCGGCGAGATCGATATGACGGGCGCCGAGCGGGCGCAGCGC
AGCTATTACCGCGACTATGCCTCGGCGAGCGGTGCCAATGATCCTTACCGCAACAATTCCGGCTTTGCCGATTTCGCCGA
TATCGACAACACTTTTGCCAATTTCTTTTCCCGCCGCACCGGCGGCGGCAGGATGCGCAGCCAAGGCCAGGATCGGCGTT
TCTCCATGGAGGTCGATTTTCTCGAGGCCGTCAACGGCACCAGGACCGAGATCAAGCTGCCGGATGGGCCGCAGCTCGAC
GTGCAGATCCCGCCCGGAACCCGCGACGGCCAGACCTTGCGCCTGCGTGGCAAAGGCGAACCGGGCATTGGCGGCGGCCC
GCCGGGCGACGCCCTGATCGAGATCCGTGTGGCCCCTCACCGCTTCTTCACCCGCGACGGCGACGACATCCGCCTGGAAC
TGCCGATCTCGCTGGGCGAGGCGGTGCTCGGCGGCAAGGTCCGCGTCCCGACACCGTCGGGACCTGTCAACGTGACGCTG
CCTCCGCACTCGAATACGGGCAAGGTCCTGCGTCTCAGGGGCAAGGGCGTTCCAAAACGCGGTGGCGGACACGGCGATGT
CTATGTCTCCTTGAAGATCGTGCTGCCCGATAATCCGGACGAACGGCTGACCTCCCTGGTGAAGGAATGGGCGGCGGCAA
ATCCATACGATCCGAGGAAGAACATGGAGGCCTGA

Upstream 100 bases:

>100_bases
CTTGATGCGCCGCGTGGGCTGCCCCTCCCCGGCGGCGGACCGGCAACCTATATCAGTGACAAGCCAACCAGCAGCATGGA
CTGCCCGACCGGAGATATGT

Downstream 100 bases:

>100_bases
TCATGGATGATCATGAGTTCCGTCTTTGCTTGAAAATCGATGTCGTCCAGCTCGACTTCTGGGTCGAACGGGGCTGGCTT
GTCCCGGCGATGTCAGGCGA

Product: putative molecular chaperone protein, DnaJ family

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 304; Mature: 303

Protein sequence:

>304_residues
MSQDPYELLGVKRDATQKEIQSAFRKLAKKLHPDLNPGDKKAEDRFKDISTAYEILSDEQKRGRFDRGEIDMTGAERAQR
SYYRDYASASGANDPYRNNSGFADFADIDNTFANFFSRRTGGGRMRSQGQDRRFSMEVDFLEAVNGTRTEIKLPDGPQLD
VQIPPGTRDGQTLRLRGKGEPGIGGGPPGDALIEIRVAPHRFFTRDGDDIRLELPISLGEAVLGGKVRVPTPSGPVNVTL
PPHSNTGKVLRLRGKGVPKRGGGHGDVYVSLKIVLPDNPDERLTSLVKEWAAANPYDPRKNMEA

Sequences:

>Translated_304_residues
MSQDPYELLGVKRDATQKEIQSAFRKLAKKLHPDLNPGDKKAEDRFKDISTAYEILSDEQKRGRFDRGEIDMTGAERAQR
SYYRDYASASGANDPYRNNSGFADFADIDNTFANFFSRRTGGGRMRSQGQDRRFSMEVDFLEAVNGTRTEIKLPDGPQLD
VQIPPGTRDGQTLRLRGKGEPGIGGGPPGDALIEIRVAPHRFFTRDGDDIRLELPISLGEAVLGGKVRVPTPSGPVNVTL
PPHSNTGKVLRLRGKGVPKRGGGHGDVYVSLKIVLPDNPDERLTSLVKEWAAANPYDPRKNMEA
>Mature_303_residues
SQDPYELLGVKRDATQKEIQSAFRKLAKKLHPDLNPGDKKAEDRFKDISTAYEILSDEQKRGRFDRGEIDMTGAERAQRS
YYRDYASASGANDPYRNNSGFADFADIDNTFANFFSRRTGGGRMRSQGQDRRFSMEVDFLEAVNGTRTEIKLPDGPQLDV
QIPPGTRDGQTLRLRGKGEPGIGGGPPGDALIEIRVAPHRFFTRDGDDIRLELPISLGEAVLGGKVRVPTPSGPVNVTLP
PHSNTGKVLRLRGKGVPKRGGGHGDVYVSLKIVLPDNPDERLTSLVKEWAAANPYDPRKNMEA

Specific function: DNA-binding protein that preferentially recognizes a curved DNA sequence. It is probably a functional analog of DnaJ; displays overlapping activities with DnaJ, but functions under different conditions, probably acting as a molecular chaperone in an adapt

COG id: COG2214

COG function: function code O; DnaJ-class molecular chaperone

Gene ontology:

Cell location: Cytoplasm, nucleoid [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 J domain [H]

Homologues:

Organism=Homo sapiens, GI205360838, Length=340, Percent_Identity=30.2941176470588, Blast_Score=128, Evalue=7e-30,
Organism=Homo sapiens, GI205360840, Length=343, Percent_Identity=30.6122448979592, Blast_Score=127, Evalue=8e-30,
Organism=Homo sapiens, GI7706495, Length=321, Percent_Identity=29.595015576324, Blast_Score=112, Evalue=4e-25,
Organism=Homo sapiens, GI201862587, Length=349, Percent_Identity=27.2206303724928, Blast_Score=98, Evalue=1e-20,
Organism=Homo sapiens, GI56549115, Length=349, Percent_Identity=27.2206303724928, Blast_Score=97, Evalue=1e-20,
Organism=Homo sapiens, GI201862518, Length=349, Percent_Identity=27.2206303724928, Blast_Score=97, Evalue=1e-20,
Organism=Homo sapiens, GI5453690, Length=331, Percent_Identity=27.7945619335347, Blast_Score=94, Evalue=1e-19,
Organism=Homo sapiens, GI6631085, Length=331, Percent_Identity=28.0966767371601, Blast_Score=91, Evalue=1e-18,
Organism=Homo sapiens, GI24308127, Length=86, Percent_Identity=45.3488372093023, Blast_Score=74, Evalue=1e-13,
Organism=Homo sapiens, GI39204547, Length=304, Percent_Identity=25.3289473684211, Blast_Score=74, Evalue=2e-13,
Organism=Homo sapiens, GI56687498, Length=64, Percent_Identity=54.6875, Blast_Score=72, Evalue=6e-13,
Organism=Homo sapiens, GI23503241, Length=114, Percent_Identity=37.719298245614, Blast_Score=72, Evalue=6e-13,
Organism=Homo sapiens, GI47777312, Length=115, Percent_Identity=41.7391304347826, Blast_Score=70, Evalue=2e-12,
Organism=Homo sapiens, GI4504511, Length=63, Percent_Identity=53.968253968254, Blast_Score=70, Evalue=3e-12,
Organism=Homo sapiens, GI4885495, Length=65, Percent_Identity=52.3076923076923, Blast_Score=70, Evalue=3e-12,
Organism=Homo sapiens, GI17388799, Length=65, Percent_Identity=52.3076923076923, Blast_Score=70, Evalue=4e-12,
Organism=Homo sapiens, GI21553335, Length=65, Percent_Identity=46.1538461538462, Blast_Score=66, Evalue=5e-11,
Organism=Homo sapiens, GI29126218, Length=73, Percent_Identity=43.8356164383562, Blast_Score=65, Evalue=5e-11,
Organism=Homo sapiens, GI45504382, Length=73, Percent_Identity=42.4657534246575, Blast_Score=65, Evalue=5e-11,
Organism=Homo sapiens, GI22749377, Length=92, Percent_Identity=41.304347826087, Blast_Score=65, Evalue=7e-11,
Organism=Homo sapiens, GI5031741, Length=62, Percent_Identity=51.6129032258064, Blast_Score=65, Evalue=9e-11,
Organism=Escherichia coli, GI1787235, Length=316, Percent_Identity=34.8101265822785, Blast_Score=172, Evalue=2e-44,
Organism=Escherichia coli, GI1786197, Length=283, Percent_Identity=31.8021201413428, Blast_Score=112, Evalue=2e-26,
Organism=Caenorhabditis elegans, GI17553096, Length=352, Percent_Identity=28.4090909090909, Blast_Score=105, Evalue=3e-23,
Organism=Caenorhabditis elegans, GI17553098, Length=352, Percent_Identity=28.4090909090909, Blast_Score=105, Evalue=3e-23,
Organism=Caenorhabditis elegans, GI212645553, Length=337, Percent_Identity=27.5964391691395, Blast_Score=102, Evalue=2e-22,
Organism=Caenorhabditis elegans, GI17534355, Length=334, Percent_Identity=28.7425149700599, Blast_Score=87, Evalue=7e-18,
Organism=Caenorhabditis elegans, GI17554644, Length=63, Percent_Identity=53.968253968254, Blast_Score=75, Evalue=6e-14,
Organism=Caenorhabditis elegans, GI115532378, Length=67, Percent_Identity=50.7462686567164, Blast_Score=71, Evalue=6e-13,
Organism=Caenorhabditis elegans, GI17554900, Length=121, Percent_Identity=36.3636363636364, Blast_Score=69, Evalue=2e-12,
Organism=Caenorhabditis elegans, GI115532476, Length=87, Percent_Identity=45.9770114942529, Blast_Score=69, Evalue=3e-12,
Organism=Caenorhabditis elegans, GI17507263, Length=62, Percent_Identity=51.6129032258064, Blast_Score=66, Evalue=3e-11,
Organism=Caenorhabditis elegans, GI17551190, Length=69, Percent_Identity=55.0724637681159, Blast_Score=64, Evalue=8e-11,
Organism=Saccharomyces cerevisiae, GI6324265, Length=338, Percent_Identity=28.9940828402367, Blast_Score=101, Evalue=2e-22,
Organism=Saccharomyces cerevisiae, GI6323870, Length=66, Percent_Identity=45.4545454545455, Blast_Score=71, Evalue=2e-13,
Organism=Saccharomyces cerevisiae, GI6323813, Length=62, Percent_Identity=54.8387096774194, Blast_Score=64, Evalue=2e-11,
Organism=Saccharomyces cerevisiae, GI6323119, Length=64, Percent_Identity=51.5625, Blast_Score=64, Evalue=3e-11,
Organism=Drosophila melanogaster, GI24658562, Length=338, Percent_Identity=30.4733727810651, Blast_Score=105, Evalue=4e-23,
Organism=Drosophila melanogaster, GI24658555, Length=338, Percent_Identity=30.4733727810651, Blast_Score=105, Evalue=4e-23,
Organism=Drosophila melanogaster, GI19920464, Length=320, Percent_Identity=26.875, Blast_Score=101, Evalue=5e-22,
Organism=Drosophila melanogaster, GI85726398, Length=354, Percent_Identity=29.0960451977401, Blast_Score=101, Evalue=6e-22,
Organism=Drosophila melanogaster, GI45549272, Length=368, Percent_Identity=25.8152173913043, Blast_Score=99, Evalue=4e-21,
Organism=Drosophila melanogaster, GI45552813, Length=368, Percent_Identity=25.8152173913043, Blast_Score=99, Evalue=4e-21,
Organism=Drosophila melanogaster, GI45552811, Length=368, Percent_Identity=25.8152173913043, Blast_Score=98, Evalue=5e-21,
Organism=Drosophila melanogaster, GI18858081, Length=340, Percent_Identity=29.7058823529412, Blast_Score=96, Evalue=2e-20,
Organism=Drosophila melanogaster, GI24654066, Length=92, Percent_Identity=43.4782608695652, Blast_Score=71, Evalue=8e-13,
Organism=Drosophila melanogaster, GI24654070, Length=92, Percent_Identity=43.4782608695652, Blast_Score=71, Evalue=8e-13,
Organism=Drosophila melanogaster, GI24654068, Length=92, Percent_Identity=43.4782608695652, Blast_Score=71, Evalue=8e-13,
Organism=Drosophila melanogaster, GI24654072, Length=92, Percent_Identity=43.4782608695652, Blast_Score=71, Evalue=8e-13,
Organism=Drosophila melanogaster, GI21355073, Length=74, Percent_Identity=41.8918918918919, Blast_Score=68, Evalue=1e-11,
Organism=Drosophila melanogaster, GI17737735, Length=73, Percent_Identity=43.8356164383562, Blast_Score=66, Evalue=2e-11,
Organism=Drosophila melanogaster, GI28574723, Length=73, Percent_Identity=43.8356164383562, Blast_Score=66, Evalue=3e-11,
Organism=Drosophila melanogaster, GI24668523, Length=73, Percent_Identity=43.8356164383562, Blast_Score=66, Evalue=3e-11,
Organism=Drosophila melanogaster, GI20129487, Length=62, Percent_Identity=54.8387096774194, Blast_Score=66, Evalue=3e-11,
Organism=Drosophila melanogaster, GI24584014, Length=62, Percent_Identity=54.8387096774194, Blast_Score=66, Evalue=3e-11,
Organism=Drosophila melanogaster, GI21355911, Length=68, Percent_Identity=50, Blast_Score=65, Evalue=6e-11,
Organism=Drosophila melanogaster, GI161077138, Length=64, Percent_Identity=50, Blast_Score=65, Evalue=6e-11,
Organism=Drosophila melanogaster, GI24646562, Length=63, Percent_Identity=52.3809523809524, Blast_Score=65, Evalue=8e-11,
Organism=Drosophila melanogaster, GI24646560, Length=63, Percent_Identity=52.3809523809524, Blast_Score=65, Evalue=8e-11,
Organism=Drosophila melanogaster, GI24646558, Length=63, Percent_Identity=52.3809523809524, Blast_Score=65, Evalue=8e-11,
Organism=Drosophila melanogaster, GI24646556, Length=63, Percent_Identity=52.3809523809524, Blast_Score=65, Evalue=8e-11,
Organism=Drosophila melanogaster, GI21357547, Length=63, Percent_Identity=52.3809523809524, Blast_Score=65, Evalue=8e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002939
- InterPro:   IPR001623
- InterPro:   IPR018253
- InterPro:   IPR008971
- InterPro:   IPR015609
- InterPro:   IPR003095 [H]

Pfam domain/function: PF00226 DnaJ; PF01556 DnaJ_C [H]

EC number: NA

Molecular weight: Translated: 33561; Mature: 33430

Theoretical pI: Translated: 9.61; Mature: 9.61

Prosite motif: PS00636 DNAJ_1 ; PS50076 DNAJ_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
1.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
1.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSQDPYELLGVKRDATQKEIQSAFRKLAKKLHPDLNPGDKKAEDRFKDISTAYEILSDEQ
CCCCCHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCHH
KRGRFDRGEIDMTGAERAQRSYYRDYASASGANDPYRNNSGFADFADIDNTFANFFSRRT
HCCCCCCCCEECCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCC
GGGRMRSQGQDRRFSMEVDFLEAVNGTRTEIKLPDGPQLDVQIPPGTRDGQTLRLRGKGE
CCCCCCCCCCCCEEEEEEHHHHHCCCCCEEEECCCCCEEEEECCCCCCCCCEEEEECCCC
PGIGGGPPGDALIEIRVAPHRFFTRDGDDIRLELPISLGEAVLGGKVRVPTPSGPVNVTL
CCCCCCCCCCEEEEEEECCCEEECCCCCCEEEEECCCCCCHHHCCEEECCCCCCCEEEEE
PPHSNTGKVLRLRGKGVPKRGGGHGDVYVSLKIVLPDNPDERLTSLVKEWAAANPYDPRK
CCCCCCCCEEEEECCCCCCCCCCCCEEEEEEEEEECCCCHHHHHHHHHHHHCCCCCCCCC
NMEA
CCCC
>Mature Secondary Structure 
SQDPYELLGVKRDATQKEIQSAFRKLAKKLHPDLNPGDKKAEDRFKDISTAYEILSDEQ
CCCCHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCHH
KRGRFDRGEIDMTGAERAQRSYYRDYASASGANDPYRNNSGFADFADIDNTFANFFSRRT
HCCCCCCCCEECCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCC
GGGRMRSQGQDRRFSMEVDFLEAVNGTRTEIKLPDGPQLDVQIPPGTRDGQTLRLRGKGE
CCCCCCCCCCCCEEEEEEHHHHHCCCCCEEEECCCCCEEEEECCCCCCCCCEEEEECCCC
PGIGGGPPGDALIEIRVAPHRFFTRDGDDIRLELPISLGEAVLGGKVRVPTPSGPVNVTL
CCCCCCCCCCEEEEEEECCCEEECCCCCCEEEEECCCCCCHHHCCEEECCCCCCCEEEEE
PPHSNTGKVLRLRGKGVPKRGGGHGDVYVSLKIVLPDNPDERLTSLVKEWAAANPYDPRK
CCCCCCCCEEEEECCCCCCCCCCCCEEEEEEEEEECCCCHHHHHHHHHHHHCCCCCCCCC
NMEA
CCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA