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The map label for this gene is yliD [C]

Identifier: 190894533

GI number: 190894533

Start: 195147

End: 195980

Strand: Reverse

Name: yliD [C]

Synonym: RHECIAT_PC0000195

Alternate gene names: 190894533

Gene position: 195980-195147 (Counterclockwise)

Preceding gene: 190894534

Following gene: 190894532

Centisome position: 17.95

GC content: 66.55

Gene sequence:

>834_bases
ATGAGCCGTTTCCAGCGTCTGCTCGGCACGTGGGAAGGCATGGCCGGATTTGCAATCCTGGTCATCCTGCTTCTGTTCGG
GCTGCTTGCCCCCGTCATTTCGCCCGGCGATCCGCTGAGGATCGCCGGGCGGGCGCTGCTTGCGCCCTTCACCGACCCGG
CCTTTCCACTTGGCACGGATCGCCTCGGACGTGATGTGCTCGCTGGCCTGCTCTATGGCGCGCGAACCTCGCTTGCCGTC
GGCCTCGCGGCAGCCTTTTCGGCCATGGTCCTCGGTGTCTGCGTCGGCATGGCTGCCGGATTTTCCGGCGGGTTCGTCGA
CGAGGCGTTGATGCGCGTGGTCGACGCCTTCCAGATCGTGCCGGGCTTCCTGCTTGCCCTCGCCTTCGTCAGCACCATCG
GGGTGTCGACACCGATCGTCGTGCTTGCCATCGCGCTTGGCGCTTGGGCCGATCCGGCGCGGTTGACGCGAGCCCAGGTG
CTGGCGATCCGCGAGCAGGATTACGTCGCCTCTGCAAGGGTGATCGGCAAGCATCCCGCGGAAATCGCCTTTCGCGAGAT
CCTGCCGAACGCGCTGCCGCCGGTACTGGTGCTCTCCGCGACCATCGTCGCCGGCGCGATCCTCACCGAGGCGGCCCTTT
CCTTTCTCGGCCTCGGCAATCCGAATATCGCCACCTGGGGGTCGATGATCGCCGAGGGCCGCGGCGTGCTGCGCTCGGCC
GCCTATCTCTCCGTCATACCGGGCGCCGCACTTGCCGTAACCGTACTCGGCGTTCATCTCTTCAGCGAAGGTCTCGGCAA
AGCGCTTGGCGATGATGGCGGGAGGGGGGCATGA

Upstream 100 bases:

>100_bases
TCGTCGTCACCAGTGCCGTTCTCGTCATATCGGTCAATTTCTTCGTCGATCTCATCTATGCCGCGCTCGACCCGCGCATC
GGCGCTTCGGAGGGCGGCAC

Downstream 100 bases:

>100_bases
GCGACATCTTCTGCAGTCTCAGACAGCTCTCGGTCACCTATCGGCGCGACAAAAACAATGCTGCCGCCGCTCTCGACCGC
ATTGATCTCGATATCGCCGC

Product: putative ABC transporter permease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 277; Mature: 276

Protein sequence:

>277_residues
MSRFQRLLGTWEGMAGFAILVILLLFGLLAPVISPGDPLRIAGRALLAPFTDPAFPLGTDRLGRDVLAGLLYGARTSLAV
GLAAAFSAMVLGVCVGMAAGFSGGFVDEALMRVVDAFQIVPGFLLALAFVSTIGVSTPIVVLAIALGAWADPARLTRAQV
LAIREQDYVASARVIGKHPAEIAFREILPNALPPVLVLSATIVAGAILTEAALSFLGLGNPNIATWGSMIAEGRGVLRSA
AYLSVIPGAALAVTVLGVHLFSEGLGKALGDDGGRGA

Sequences:

>Translated_277_residues
MSRFQRLLGTWEGMAGFAILVILLLFGLLAPVISPGDPLRIAGRALLAPFTDPAFPLGTDRLGRDVLAGLLYGARTSLAV
GLAAAFSAMVLGVCVGMAAGFSGGFVDEALMRVVDAFQIVPGFLLALAFVSTIGVSTPIVVLAIALGAWADPARLTRAQV
LAIREQDYVASARVIGKHPAEIAFREILPNALPPVLVLSATIVAGAILTEAALSFLGLGNPNIATWGSMIAEGRGVLRSA
AYLSVIPGAALAVTVLGVHLFSEGLGKALGDDGGRGA
>Mature_276_residues
SRFQRLLGTWEGMAGFAILVILLLFGLLAPVISPGDPLRIAGRALLAPFTDPAFPLGTDRLGRDVLAGLLYGARTSLAVG
LAAAFSAMVLGVCVGMAAGFSGGFVDEALMRVVDAFQIVPGFLLALAFVSTIGVSTPIVVLAIALGAWADPARLTRAQVL
AIREQDYVASARVIGKHPAEIAFREILPNALPPVLVLSATIVAGAILTEAALSFLGLGNPNIATWGSMIAEGRGVLRSAA
YLSVIPGAALAVTVLGVHLFSEGLGKALGDDGGRGA

Specific function: Probably part of the binding-protein-dependent transport system y4tOPQRS for a peptide. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1787054, Length=270, Percent_Identity=34.0740740740741, Blast_Score=134, Evalue=6e-33,
Organism=Escherichia coli, GI1787760, Length=258, Percent_Identity=33.7209302325581, Blast_Score=129, Evalue=2e-31,
Organism=Escherichia coli, GI1789964, Length=255, Percent_Identity=40, Blast_Score=127, Evalue=6e-31,
Organism=Escherichia coli, GI1789889, Length=237, Percent_Identity=34.1772151898734, Blast_Score=115, Evalue=3e-27,
Organism=Escherichia coli, GI1787498, Length=268, Percent_Identity=32.4626865671642, Blast_Score=109, Evalue=2e-25,
Organism=Escherichia coli, GI1787549, Length=266, Percent_Identity=30.8270676691729, Blast_Score=94, Evalue=1e-20,
Organism=Escherichia coli, GI1788505, Length=212, Percent_Identity=31.1320754716981, Blast_Score=88, Evalue=5e-19,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 28337; Mature: 28206

Theoretical pI: Translated: 7.52; Mature: 7.52

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSRFQRLLGTWEGMAGFAILVILLLFGLLAPVISPGDPLRIAGRALLAPFTDPAFPLGTD
CHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCCCCCHH
RLGRDVLAGLLYGARTSLAVGLAAAFSAMVLGVCVGMAAGFSGGFVDEALMRVVDAFQIV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH
PGFLLALAFVSTIGVSTPIVVLAIALGAWADPARLTRAQVLAIREQDYVASARVIGKHPA
HHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHH
EIAFREILPNALPPVLVLSATIVAGAILTEAALSFLGLGNPNIATWGSMIAEGRGVLRSA
HHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHH
AYLSVIPGAALAVTVLGVHLFSEGLGKALGDDGGRGA
HHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
>Mature Secondary Structure 
SRFQRLLGTWEGMAGFAILVILLLFGLLAPVISPGDPLRIAGRALLAPFTDPAFPLGTD
HHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCCCCCHH
RLGRDVLAGLLYGARTSLAVGLAAAFSAMVLGVCVGMAAGFSGGFVDEALMRVVDAFQIV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH
PGFLLALAFVSTIGVSTPIVVLAIALGAWADPARLTRAQVLAIREQDYVASARVIGKHPA
HHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHH
EIAFREILPNALPPVLVLSATIVAGAILTEAALSFLGLGNPNIATWGSMIAEGRGVLRSA
HHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHH
AYLSVIPGAALAVTVLGVHLFSEGLGKALGDDGGRGA
HHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8796346; 9163424 [H]