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The map label for this gene is appB [H]

Identifier: 190894534

GI number: 190894534

Start: 195977

End: 196966

Strand: Reverse

Name: appB [H]

Synonym: RHECIAT_PC0000196

Alternate gene names: 190894534

Gene position: 196966-195977 (Counterclockwise)

Preceding gene: 190894535

Following gene: 190894533

Centisome position: 18.05

GC content: 64.65

Gene sequence:

>990_bases
GTGAAACGTGCAATCATTCTCCTGAGGCGCAGGGCGATCAGCAGCATTCCGGTTCTGCTGATCGTGGTGATCTTCACCTT
TTTCCTGCTCGAATCCGCCTCGGGCGATGCCGTCGACGCCTATCTCGGCGCGATTGGTGGCGGCGATGCGGCCCTCAGGC
AGGCGCTACGCGAGAGCTACGGCCTCGACCGGTCCATGCTGGCGCGGCTCTGGCTCTATCTTTCCTCGCTGGCCCGGCTC
GATCTCGGCTGGTCGGTCGCTTTCGACCGACCGGTTGGCGCGCTCATCGCCGAACGCCTGCCCAATACGCTGCTGCTGAT
GGGCAGCGCGACGGCGCTTTCGTTCGGCCTTGGTTCGGCGTTTGGCATTCTCGCCGGGGCGCGGCCGGGAAGCTTGCGCG
ACCGGCTGCTGTCGATCGGCTCGCTGATCGTCTATGCCATTCCGAGCTTCTGGCTCGGCCTGGTCCTGAGCATTGCCTTT
TCGGTGAAGCTGCGCTGGTTTCCGATCGCCGGCATCGAGACGATCGCTTCGGGCAAGACCGGGTTTTCCCGTGCCCTCGA
CATATCAGAGCATCTGGTCCTGCCGGTCGGCGCACTGGCCCTGATCTATCTCGCCTTGTTCCTGCGGGTGATGCGGGCCG
GCATGGCTGAGGCCTGGAAGCTCAATTTCGTCCTTTTCGCCCGCGCCAAGGGCCTGTCGCGCAGCCGCATTGTGCTGCGC
CATGTGGCGCGCAATGCGCTGCTGCCGCTCGTCACCATGCTTGGGCTGCAATCGGCGGCCATGCTCGGCGGCAGCGTGGT
CATCGAGAGCGTCTTTGCGATCCCCGGTTTCGGGCGCTTGGCACAGGAGGCGGTCAACGGCCGCGACGCGCCGCTGTTGA
TGGGCATCGTCGTCACCAGTGCCGTTCTCGTCATATCGGTCAATTTCTTCGTCGATCTCATCTATGCCGCGCTCGACCCG
CGCATCGGCGCTTCGGAGGGCGGCACATGA

Upstream 100 bases:

>100_bases
ATAGAGCGATTCCAGCAAAGTGTGCCGCGGTTTTGCGTTCGGAATTGCGTAAAAACAAAGATAGATCGGCGGCAAATCTC
CACCAGAGGCCCTGTCCGGC

Downstream 100 bases:

>100_bases
GCCGTTTCCAGCGTCTGCTCGGCACGTGGGAAGGCATGGCCGGATTTGCAATCCTGGTCATCCTGCTTCTGTTCGGGCTG
CTTGCCCCCGTCATTTCGCC

Product: putative ABC transporter permease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 329; Mature: 329

Protein sequence:

>329_residues
MKRAIILLRRRAISSIPVLLIVVIFTFFLLESASGDAVDAYLGAIGGGDAALRQALRESYGLDRSMLARLWLYLSSLARL
DLGWSVAFDRPVGALIAERLPNTLLLMGSATALSFGLGSAFGILAGARPGSLRDRLLSIGSLIVYAIPSFWLGLVLSIAF
SVKLRWFPIAGIETIASGKTGFSRALDISEHLVLPVGALALIYLALFLRVMRAGMAEAWKLNFVLFARAKGLSRSRIVLR
HVARNALLPLVTMLGLQSAAMLGGSVVIESVFAIPGFGRLAQEAVNGRDAPLLMGIVVTSAVLVISVNFFVDLIYAALDP
RIGASEGGT

Sequences:

>Translated_329_residues
MKRAIILLRRRAISSIPVLLIVVIFTFFLLESASGDAVDAYLGAIGGGDAALRQALRESYGLDRSMLARLWLYLSSLARL
DLGWSVAFDRPVGALIAERLPNTLLLMGSATALSFGLGSAFGILAGARPGSLRDRLLSIGSLIVYAIPSFWLGLVLSIAF
SVKLRWFPIAGIETIASGKTGFSRALDISEHLVLPVGALALIYLALFLRVMRAGMAEAWKLNFVLFARAKGLSRSRIVLR
HVARNALLPLVTMLGLQSAAMLGGSVVIESVFAIPGFGRLAQEAVNGRDAPLLMGIVVTSAVLVISVNFFVDLIYAALDP
RIGASEGGT
>Mature_329_residues
MKRAIILLRRRAISSIPVLLIVVIFTFFLLESASGDAVDAYLGAIGGGDAALRQALRESYGLDRSMLARLWLYLSSLARL
DLGWSVAFDRPVGALIAERLPNTLLLMGSATALSFGLGSAFGILAGARPGSLRDRLLSIGSLIVYAIPSFWLGLVLSIAF
SVKLRWFPIAGIETIASGKTGFSRALDISEHLVLPVGALALIYLALFLRVMRAGMAEAWKLNFVLFARAKGLSRSRIVLR
HVARNALLPLVTMLGLQSAAMLGGSVVIESVFAIPGFGRLAQEAVNGRDAPLLMGIVVTSAVLVISVNFFVDLIYAALDP
RIGASEGGT

Specific function: This protein is a component of an oligopeptide permease, a binding protein-dependent transport system. This APP system can completely substitute for the OPP system in both sporulation and genetic competence, though, unlike OPP, is incapable of transportin

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1787053, Length=313, Percent_Identity=34.185303514377, Blast_Score=163, Evalue=1e-41,
Organism=Escherichia coli, GI1789965, Length=335, Percent_Identity=32.5373134328358, Blast_Score=156, Evalue=2e-39,
Organism=Escherichia coli, GI1789888, Length=320, Percent_Identity=32.8125, Blast_Score=156, Evalue=2e-39,
Organism=Escherichia coli, GI1787497, Length=318, Percent_Identity=30.5031446540881, Blast_Score=138, Evalue=5e-34,
Organism=Escherichia coli, GI1787761, Length=336, Percent_Identity=31.8452380952381, Blast_Score=114, Evalue=6e-27,
Organism=Escherichia coli, GI1787550, Length=274, Percent_Identity=30.6569343065693, Blast_Score=114, Evalue=9e-27,
Organism=Escherichia coli, GI1788504, Length=355, Percent_Identity=26.4788732394366, Blast_Score=100, Evalue=1e-22,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 35051; Mature: 35051

Theoretical pI: Translated: 11.14; Mature: 11.14

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKRAIILLRRRAISSIPVLLIVVIFTFFLLESASGDAVDAYLGAIGGGDAALRQALRESY
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHCCCCCHHHHHHHHHHHH
GLDRSMLARLWLYLSSLARLDLGWSVAFDRPVGALIAERLPNTLLLMGSATALSFGLGSA
CCCHHHHHHHHHHHHHHHHHCCCCEEECCCCHHHHHHHHCCCEEEEECCHHHHHHHHHHH
FGILAGARPGSLRDRLLSIGSLIVYAIPSFWLGLVLSIAFSVKLRWFPIAGIETIASGKT
HHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEECCCHHHHHCCCC
GFSRALDISEHLVLPVGALALIYLALFLRVMRAGMAEAWKLNFVLFARAKGLSRSRIVLR
CHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHEEEEEECCCCCHHHHHHH
HVARNALLPLVTMLGLQSAAMLGGSVVIESVFAIPGFGRLAQEAVNGRDAPLLMGIVVTS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCHHHHHHHHHH
AVLVISVNFFVDLIYAALDPRIGASEGGT
HHHHHHHHHHHHHHHHHHCCCCCCCCCCC
>Mature Secondary Structure
MKRAIILLRRRAISSIPVLLIVVIFTFFLLESASGDAVDAYLGAIGGGDAALRQALRESY
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHCCCCCHHHHHHHHHHHH
GLDRSMLARLWLYLSSLARLDLGWSVAFDRPVGALIAERLPNTLLLMGSATALSFGLGSA
CCCHHHHHHHHHHHHHHHHHCCCCEEECCCCHHHHHHHHCCCEEEEECCHHHHHHHHHHH
FGILAGARPGSLRDRLLSIGSLIVYAIPSFWLGLVLSIAFSVKLRWFPIAGIETIASGKT
HHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEECCCHHHHHCCCC
GFSRALDISEHLVLPVGALALIYLALFLRVMRAGMAEAWKLNFVLFARAKGLSRSRIVLR
CHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHEEEEEECCCCCHHHHHHH
HVARNALLPLVTMLGLQSAAMLGGSVVIESVFAIPGFGRLAQEAVNGRDAPLLMGIVVTS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCHHHHHHHHHH
AVLVISVNFFVDLIYAALDPRIGASEGGT
HHHHHHHHHHHHHHHHHHCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7997159; 9384377 [H]