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The map label for this gene is cydA [H]

Identifier: 190894513

GI number: 190894513

Start: 174553

End: 176133

Strand: Reverse

Name: cydA [H]

Synonym: RHECIAT_PC0000175

Alternate gene names: 190894513

Gene position: 176133-174553 (Counterclockwise)

Preceding gene: 190894514

Following gene: 190894512

Centisome position: 16.14

GC content: 61.61

Gene sequence:

>1581_bases
ATGGAACTAGATATCGTAGCACTTTCGCGCTTCCAATTCGCGCTGACGGCGCTTTACCACTTCCTGTTCGTGCCGCTGAC
GCTCGGCCTGTCCGTGCTGCTGGCGATCATGGAAACCGTCTATGTGATGACCGGCCGCCAGATCTGGCGGCAGATGACGA
AATTCTGGGGGACGCTGTTCGGCATCAATTTCGTCATCGGCGTCGCCACCGGCATCGTCATGGAATTCCAGTTCGGCATG
AACTGGAGCTATTACAGCTATTATGTCGGCGACATCTTCGGCGCGCCGCTGGCGATCGAAGGTCTGATGGCCTTCTTCCT
GGAGGCAACCTTCGTCGGTCTGTTTTTCTTCGGCTGGGACAAGCTGTCGAAGGTCGGCCATCTCGTTGCCACCTGGGCGG
TGGCGCTCGGCTCGAATTTTTCCGCACTCTGGATCCTCATCGCCAATGGCTGGATGCAGAACCCAGTGGGATCGGCGCTC
AATCCGCAGACGATGCGCATGGAGATCACAAGCTTCTTCGACGTGGTCTTCAACCCGGTCGCCCAAGCGAAATTCGTTCA
TACGGTCTCGGCGGGTTATGTCTGCGCCTCGATCTTCGTGCTCGGCGTTTCCGCCTGGTATGTGCTGAAGGGCCGGCATA
TCGAGCTTGCCAAGCGCTCGATGACGGTTGCCGCCTCCTTCGGCCTCGCCTCGGCGCTCTCGGTCGTCGTGCTCGGCGAC
GAAAGCGGTTATCTCGCGACCGAAAATCAGAAGATGAAGCTCGCCGCAATCGAGGGCATGTGGAAGACCGAGCCGGCGCC
GGCTGCCTTCACCGCCTTCGGCTTCCCCGATCAGGAGGCGCGCGAAACGCATTTTGCCGTGCACATTCCTTGGGTCATGG
GCCTGATCGGCACACGCTCGCTGACGACCGAAATTCCCGGAATCGACAAACTCGAACAGCAGGCCGAGGTCCGCATCCGC
GACGGCATCAAGGCCTATGACGCGCTGATGCAGATCCGCACGGCGCCGGCGCAGGACCAGGTTGCGCAGGAAGTGCGCAG
CTCCTTCGAGGATCTCGGCCATGATCTCGGTTACGCCCTTCTTCTGAAGCGCTATGTCGACGATCCGCGCCAGGCAACCG
ACGCGCAGATCGCTCAGGCGGCGCGCGATACGATCCCGCATGTGCCGACGCTCTTCTGGTCCTTCCGCATCATGGTCGGC
CTCGGCATGTTCTTTATCCTGCTGACCGCCACTTTCTTCTGGCTGTCGGCGCGGCGTCATCTCGACACGTACCCGCTGCT
GCTGAGGATTGCCGTGCTGGCGATCCCTCTCCCCTGGGTCGCCATCGAGCTCGGCTGGGTGGTCGCCGAATTCGGCCGCC
AGCCCTGGGTGATCGAAGGCGTGCTGCCGACGGCGGCGGCCGTCTCCAGCCTCGGCGCCAGCACGGTGCTGCTGACCATT
ATCGGTTTTGGCGCCCTCTACACGGTGCTGATCGTCATCGAGATGAGCCTGATGATCAAGGCGATCAGACAGGGGCCGGA
ACCGGATGACGAGCCGGAATCGGCGCTGATTTCCGAAACCCTCATCCCGGCTGCGGAGTGA

Upstream 100 bases:

>100_bases
TCGACCGGCTTCGGCCGGACTAAGCGAGACCCGCATGCCCTCAACCGCCACCCGGCGCTTGGGAATGCTCCGTACCCCGT
GGGACCGTGGGAGAAAGACA

Downstream 100 bases:

>100_bases
CCTGCCATGATCCTTCACGAATTCATCGATTATGAAACCCTGCGCGTCATCTGGTGGCTGCTGCTCGGCGTCGTGCTGAT
CGCTTTTGCGGCCACAGGCG

Product: cytochrome bd ubiquinol oxidase subunit I

Products: NA

Alternate protein names: Cytochrome bd-I oxidase subunit I; Cytochrome d ubiquinol oxidase subunit I [H]

Number of amino acids: Translated: 526; Mature: 526

Protein sequence:

>526_residues
MELDIVALSRFQFALTALYHFLFVPLTLGLSVLLAIMETVYVMTGRQIWRQMTKFWGTLFGINFVIGVATGIVMEFQFGM
NWSYYSYYVGDIFGAPLAIEGLMAFFLEATFVGLFFFGWDKLSKVGHLVATWAVALGSNFSALWILIANGWMQNPVGSAL
NPQTMRMEITSFFDVVFNPVAQAKFVHTVSAGYVCASIFVLGVSAWYVLKGRHIELAKRSMTVAASFGLASALSVVVLGD
ESGYLATENQKMKLAAIEGMWKTEPAPAAFTAFGFPDQEARETHFAVHIPWVMGLIGTRSLTTEIPGIDKLEQQAEVRIR
DGIKAYDALMQIRTAPAQDQVAQEVRSSFEDLGHDLGYALLLKRYVDDPRQATDAQIAQAARDTIPHVPTLFWSFRIMVG
LGMFFILLTATFFWLSARRHLDTYPLLLRIAVLAIPLPWVAIELGWVVAEFGRQPWVIEGVLPTAAAVSSLGASTVLLTI
IGFGALYTVLIVIEMSLMIKAIRQGPEPDDEPESALISETLIPAAE

Sequences:

>Translated_526_residues
MELDIVALSRFQFALTALYHFLFVPLTLGLSVLLAIMETVYVMTGRQIWRQMTKFWGTLFGINFVIGVATGIVMEFQFGM
NWSYYSYYVGDIFGAPLAIEGLMAFFLEATFVGLFFFGWDKLSKVGHLVATWAVALGSNFSALWILIANGWMQNPVGSAL
NPQTMRMEITSFFDVVFNPVAQAKFVHTVSAGYVCASIFVLGVSAWYVLKGRHIELAKRSMTVAASFGLASALSVVVLGD
ESGYLATENQKMKLAAIEGMWKTEPAPAAFTAFGFPDQEARETHFAVHIPWVMGLIGTRSLTTEIPGIDKLEQQAEVRIR
DGIKAYDALMQIRTAPAQDQVAQEVRSSFEDLGHDLGYALLLKRYVDDPRQATDAQIAQAARDTIPHVPTLFWSFRIMVG
LGMFFILLTATFFWLSARRHLDTYPLLLRIAVLAIPLPWVAIELGWVVAEFGRQPWVIEGVLPTAAAVSSLGASTVLLTI
IGFGALYTVLIVIEMSLMIKAIRQGPEPDDEPESALISETLIPAAE
>Mature_526_residues
MELDIVALSRFQFALTALYHFLFVPLTLGLSVLLAIMETVYVMTGRQIWRQMTKFWGTLFGINFVIGVATGIVMEFQFGM
NWSYYSYYVGDIFGAPLAIEGLMAFFLEATFVGLFFFGWDKLSKVGHLVATWAVALGSNFSALWILIANGWMQNPVGSAL
NPQTMRMEITSFFDVVFNPVAQAKFVHTVSAGYVCASIFVLGVSAWYVLKGRHIELAKRSMTVAASFGLASALSVVVLGD
ESGYLATENQKMKLAAIEGMWKTEPAPAAFTAFGFPDQEARETHFAVHIPWVMGLIGTRSLTTEIPGIDKLEQQAEVRIR
DGIKAYDALMQIRTAPAQDQVAQEVRSSFEDLGHDLGYALLLKRYVDDPRQATDAQIAQAARDTIPHVPTLFWSFRIMVG
LGMFFILLTATFFWLSARRHLDTYPLLLRIAVLAIPLPWVAIELGWVVAEFGRQPWVIEGVLPTAAAVSSLGASTVLLTI
IGFGALYTVLIVIEMSLMIKAIRQGPEPDDEPESALISETLIPAAE

Specific function: Cytochrome d terminal oxidase complex is the component of the aerobic respiratory chain that predominates when cells are grown at low aeration [H]

COG id: COG1271

COG function: function code C; Cytochrome bd-type quinol oxidase, subunit 1

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the cytochrome ubiquinol oxidase subunit 1 family [H]

Homologues:

Organism=Escherichia coli, GI87081779, Length=505, Percent_Identity=60.5940594059406, Blast_Score=632, Evalue=0.0,
Organism=Escherichia coli, GI1787212, Length=504, Percent_Identity=51.5873015873016, Blast_Score=524, Evalue=1e-150,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002585 [H]

Pfam domain/function: PF01654 Bac_Ubq_Cox [H]

EC number: 1.10.3.-

Molecular weight: Translated: 58112; Mature: 58112

Theoretical pI: Translated: 5.13; Mature: 5.13

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
3.6 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MELDIVALSRFQFALTALYHFLFVPLTLGLSVLLAIMETVYVMTGRQIWRQMTKFWGTLF
CCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
GINFVIGVATGIVMEFQFGMNWSYYSYYVGDIFGAPLAIEGLMAFFLEATFVGLFFFGWD
HHHHHHHHHHHHHEEEEECCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHH
KLSKVGHLVATWAVALGSNFSALWILIANGWMQNPVGSALNPQTMRMEITSFFDVVFNPV
HHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH
AQAKFVHTVSAGYVCASIFVLGVSAWYVLKGRHIELAKRSMTVAASFGLASALSVVVLGD
HHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCHHHHHHHHHHHHHHCHHHHEEEEEEEC
ESGYLATENQKMKLAAIEGMWKTEPAPAAFTAFGFPDQEARETHFAVHIPWVMGLIGTRS
CCCCEECCCCCEEEEEECCCCCCCCCCCEEEECCCCCCHHCCCEEEEEHHHHHHHHCCCH
LTTEIPGIDKLEQQAEVRIRDGIKAYDALMQIRTAPAQDQVAQEVRSSFEDLGHDLGYAL
HHCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHH
LLKRYVDDPRQATDAQIAQAARDTIPHVPTLFWSFRIMVGLGMFFILLTATFFWLSARRH
HHHHHHCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
LDTYPLLLRIAVLAIPLPWVAIELGWVVAEFGRQPWVIEGVLPTAAAVSSLGASTVLLTI
CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHCCHHHHHHHH
IGFGALYTVLIVIEMSLMIKAIRQGPEPDDEPESALISETLIPAAE
HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCCCC
>Mature Secondary Structure
MELDIVALSRFQFALTALYHFLFVPLTLGLSVLLAIMETVYVMTGRQIWRQMTKFWGTLF
CCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
GINFVIGVATGIVMEFQFGMNWSYYSYYVGDIFGAPLAIEGLMAFFLEATFVGLFFFGWD
HHHHHHHHHHHHHEEEEECCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHH
KLSKVGHLVATWAVALGSNFSALWILIANGWMQNPVGSALNPQTMRMEITSFFDVVFNPV
HHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH
AQAKFVHTVSAGYVCASIFVLGVSAWYVLKGRHIELAKRSMTVAASFGLASALSVVVLGD
HHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCHHHHHHHHHHHHHHCHHHHEEEEEEEC
ESGYLATENQKMKLAAIEGMWKTEPAPAAFTAFGFPDQEARETHFAVHIPWVMGLIGTRS
CCCCEECCCCCEEEEEECCCCCCCCCCCEEEECCCCCCHHCCCEEEEEHHHHHHHHCCCH
LTTEIPGIDKLEQQAEVRIRDGIKAYDALMQIRTAPAQDQVAQEVRSSFEDLGHDLGYAL
HHCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHH
LLKRYVDDPRQATDAQIAQAARDTIPHVPTLFWSFRIMVGLGMFFILLTATFFWLSARRH
HHHHHHCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
LDTYPLLLRIAVLAIPLPWVAIELGWVVAEFGRQPWVIEGVLPTAAAVSSLGASTVLLTI
CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHCCHHHHHHHH
IGFGALYTVLIVIEMSLMIKAIRQGPEPDDEPESALISETLIPAAE
HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: Fe [C]

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: Oxidoreductases; Acting on diphenols and related substances as donors; With oxygen as acceptor [C]

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 12471157 [H]