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The map label for this gene is cydB [H]

Identifier: 190894512

GI number: 190894512

Start: 173392

End: 174546

Strand: Reverse

Name: cydB [H]

Synonym: RHECIAT_PC0000174

Alternate gene names: 190894512

Gene position: 174546-173392 (Counterclockwise)

Preceding gene: 190894513

Following gene: 190894507

Centisome position: 15.99

GC content: 61.04

Gene sequence:

>1155_bases
ATGATCCTTCACGAATTCATCGATTATGAAACCCTGCGCGTCATCTGGTGGCTGCTGCTCGGCGTCGTGCTGATCGCTTT
TGCGGCCACAGGCGGCTTCGACCTTGGCGTTGGCACTCTCCTGCCTTTCGTCGCCAGGACCGATACGGAACGACGCGTGG
CGATCAACACGATCGGCGCCACCTGGGAAGGCAACCAGGTCTGGCTGATCCTCGGCGGCGGCGCCATCTTCGCCGCCTGG
CCGCCGCTCTATGCTGTCTCCTTCTCGGGCTTTTATCTCGCGATGTTCGCGATCCTCTTCGCGCTCATCCTGCGCCCGGT
CGGCTTCAAATACCGGTCGAAGCGCGACAGCGCCCGCTGGCGCAGCGGCTGGGACTGGGCGCTCTTCGTCGGCGGTTTCG
TGCCGTCGCTGATCTTTGGTGTTGCCGTCGGCAATGTGCTGCAAGGCGTGCCCTTCCGTTTTGCCGACGACATGCGGATT
TTCTACGAAGGCTCGTTCTTCGCTCTGCTCAACCCCTATGCGCTGCTCTGCGGCCTGCTCTCCGTTGCCATGCTGACAAT
GCACGGCGCGGCCTGGCTGGTGGTGAAGGCGAGCGGTCCGGTCGCGGAGCGGGCCAGAAGTTACGGCAGTATCGCCGCTC
TTGCCGCTATTTTGCTTTTCGCGCTCGGCGGCCTCTTTCTCTGGACCGGGGTCAGCGGCTATCGCATCACCAGCGATATC
AGCCCGATTGGACCTTCCAATCCGCTGCTGAAGACGGTGGTGATCGAGAACGGCGCATGGCTTGCCAATTACAGCGCCCA
TTCGTGGATGATTGTGGCACCCATCCTCGGCTTTGCCGGCGCCGCACTGGCCTTCATCGCCATGCGCGCAAGACGAGAGG
TGATAACGCTCATCTTCAGTAAGATCGCGATATTGGGCATCATCTCGACGGTCGGTCTGTCGATGTTCCCCTTCATCCTG
CCCTCCTCGCTCGATCCACGATCTAGCCTGACGGTCTGGGATGCGTCGTCGAGCCATCAGACGCTGTTCATCATGCTGGT
GGTGTCGGCGATCTTCCTGCCGATCATCGTCGCCTACACCGCCTGGGTCTATAAGGTCCTGTGGGGCAAGGTCGACGAGA
AATCCGTCACCGACAAGAACAGTCACGCTTACTGA

Upstream 100 bases:

>100_bases
CCTGATGATCAAGGCGATCAGACAGGGGCCGGAACCGGATGACGAGCCGGAATCGGCGCTGATTTCCGAAACCCTCATCC
CGGCTGCGGAGTGACCTGCC

Downstream 100 bases:

>100_bases
GGGAGATGAAACAATGTGGTATTTCGCATGGATCCTCGGCCTGCCGCTGGCGGCCGCCTTCGCTGTCCTCAACGCTATGT
GGTACGAGCTGGTCGATGAC

Product: cytochrome bd ubiquinol oxidase subunit II

Products: NA

Alternate protein names: Cytochrome bd-I oxidase subunit II; Cytochrome d ubiquinol oxidase subunit II [H]

Number of amino acids: Translated: 384; Mature: 384

Protein sequence:

>384_residues
MILHEFIDYETLRVIWWLLLGVVLIAFAATGGFDLGVGTLLPFVARTDTERRVAINTIGATWEGNQVWLILGGGAIFAAW
PPLYAVSFSGFYLAMFAILFALILRPVGFKYRSKRDSARWRSGWDWALFVGGFVPSLIFGVAVGNVLQGVPFRFADDMRI
FYEGSFFALLNPYALLCGLLSVAMLTMHGAAWLVVKASGPVAERARSYGSIAALAAILLFALGGLFLWTGVSGYRITSDI
SPIGPSNPLLKTVVIENGAWLANYSAHSWMIVAPILGFAGAALAFIAMRARREVITLIFSKIAILGIISTVGLSMFPFIL
PSSLDPRSSLTVWDASSSHQTLFIMLVVSAIFLPIIVAYTAWVYKVLWGKVDEKSVTDKNSHAY

Sequences:

>Translated_384_residues
MILHEFIDYETLRVIWWLLLGVVLIAFAATGGFDLGVGTLLPFVARTDTERRVAINTIGATWEGNQVWLILGGGAIFAAW
PPLYAVSFSGFYLAMFAILFALILRPVGFKYRSKRDSARWRSGWDWALFVGGFVPSLIFGVAVGNVLQGVPFRFADDMRI
FYEGSFFALLNPYALLCGLLSVAMLTMHGAAWLVVKASGPVAERARSYGSIAALAAILLFALGGLFLWTGVSGYRITSDI
SPIGPSNPLLKTVVIENGAWLANYSAHSWMIVAPILGFAGAALAFIAMRARREVITLIFSKIAILGIISTVGLSMFPFIL
PSSLDPRSSLTVWDASSSHQTLFIMLVVSAIFLPIIVAYTAWVYKVLWGKVDEKSVTDKNSHAY
>Mature_384_residues
MILHEFIDYETLRVIWWLLLGVVLIAFAATGGFDLGVGTLLPFVARTDTERRVAINTIGATWEGNQVWLILGGGAIFAAW
PPLYAVSFSGFYLAMFAILFALILRPVGFKYRSKRDSARWRSGWDWALFVGGFVPSLIFGVAVGNVLQGVPFRFADDMRI
FYEGSFFALLNPYALLCGLLSVAMLTMHGAAWLVVKASGPVAERARSYGSIAALAAILLFALGGLFLWTGVSGYRITSDI
SPIGPSNPLLKTVVIENGAWLANYSAHSWMIVAPILGFAGAALAFIAMRARREVITLIFSKIAILGIISTVGLSMFPFIL
PSSLDPRSSLTVWDASSSHQTLFIMLVVSAIFLPIIVAYTAWVYKVLWGKVDEKSVTDKNSHAY

Specific function: Cytochrome d terminal oxidase complex is the component of the aerobic respiratory chain that predominates when cells are grown at low aeration [H]

COG id: COG1294

COG function: function code C; Cytochrome bd-type quinol oxidase, subunit 2

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: To E.coli AppB [H]

Homologues:

Organism=Escherichia coli, GI1786954, Length=377, Percent_Identity=47.7453580901857, Blast_Score=371, Evalue=1e-104,
Organism=Escherichia coli, GI1787213, Length=377, Percent_Identity=47.4801061007958, Blast_Score=365, Evalue=1e-102,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003317 [H]

Pfam domain/function: PF02322 Cyto_ox_2 [H]

EC number: 1.10.3.-

Molecular weight: Translated: 41937; Mature: 41937

Theoretical pI: Translated: 9.70; Mature: 9.70

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MILHEFIDYETLRVIWWLLLGVVLIAFAATGGFDLGVGTLLPFVARTDTERRVAINTIGA
CCCHHHHCHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCCCCEEEEEEECC
TWEGNQVWLILGGGAIFAAWPPLYAVSFSGFYLAMFAILFALILRPVGFKYRSKRDSARW
EECCCEEEEEEECCEEEECCCCHHHEEHHHHHHHHHHHHHHHHHHHCCCCHHCCCCCCCC
RSGWDWALFVGGFVPSLIFGVAVGNVLQGVPFRFADDMRIFYEGSFFALLNPYALLCGLL
CCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCHHHHHHHHHHHHHHH
SVAMLTMHGAAWLVVKASGPVAERARSYGSIAALAAILLFALGGLFLWTGVSGYRITSDI
HHHHHHHCCCEEEEEECCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCEEECCC
SPIGPSNPLLKTVVIENGAWLANYSAHSWMIVAPILGFAGAALAFIAMRARREVITLIFS
CCCCCCCCCEEEEEEECCCEEEECCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
KIAILGIISTVGLSMFPFILPSSLDPRSSLTVWDASSSHQTLFIMLVVSAIFLPIIVAYT
HHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHH
AWVYKVLWGKVDEKSVTDKNSHAY
HHHHHHHHCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MILHEFIDYETLRVIWWLLLGVVLIAFAATGGFDLGVGTLLPFVARTDTERRVAINTIGA
CCCHHHHCHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCCCCEEEEEEECC
TWEGNQVWLILGGGAIFAAWPPLYAVSFSGFYLAMFAILFALILRPVGFKYRSKRDSARW
EECCCEEEEEEECCEEEECCCCHHHEEHHHHHHHHHHHHHHHHHHHCCCCHHCCCCCCCC
RSGWDWALFVGGFVPSLIFGVAVGNVLQGVPFRFADDMRIFYEGSFFALLNPYALLCGLL
CCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCHHHHHHHHHHHHHHH
SVAMLTMHGAAWLVVKASGPVAERARSYGSIAALAAILLFALGGLFLWTGVSGYRITSDI
HHHHHHHCCCEEEEEECCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCEEECCC
SPIGPSNPLLKTVVIENGAWLANYSAHSWMIVAPILGFAGAALAFIAMRARREVITLIFS
CCCCCCCCCEEEEEEECCCEEEECCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
KIAILGIISTVGLSMFPFILPSSLDPRSSLTVWDASSSHQTLFIMLVVSAIFLPIIVAYT
HHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHH
AWVYKVLWGKVDEKSVTDKNSHAY
HHHHHHHHCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: Oxidoreductases; Acting on diphenols and related substances as donors; With oxygen as acceptor [C]

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]