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The map label for this gene is ybfI [H]

Identifier: 190894462

GI number: 190894462

Start: 121842

End: 122663

Strand: Reverse

Name: ybfI [H]

Synonym: RHECIAT_PC0000124

Alternate gene names: 190894462

Gene position: 122663-121842 (Counterclockwise)

Preceding gene: 190894463

Following gene: 190894461

Centisome position: 11.24

GC content: 65.09

Gene sequence:

>822_bases
ATGCCGCTCGCAGGGGCGGAGACGACTCGCTTTTGGCGCGATCCGCGCTTCGGCGGCATGGAATGCCTGAGCGCGACCTT
CCTGACGCATGAGTTCGCGCCGCACGCCCATGATACGTTCAGCATCGGCGCCATCGAGAGCGGCAGCCAGATCGCCACGA
TCTGCGGCGCCCGCGAGGCCTCCGGCCCCGGCGATCTCTATTTGATCAATCCGGGCGAGACGCATGACGGGGCGCCGACC
GATGGCGGCTATCGCTATCGTATGATCTATCCCGACCTGTCGCTGTTTCGCGAAATACTGGAGGATATCACCGGCCGCGT
CTTTCACGGCACGCCGGCCTTCGGCAAGCAGATCCTGCATGATCCCAAACTGGCCGCGGCGTTTCTTGGTGCGCACCGGA
CCTTGGAGGCGGGAGCCGGGGCGCTGGAGACCGGCCAGAGCATGTTCCTGGTGCTTGACGCGATGTTTCGCCAGCATGGA
AGCTCGATCATCGTGCCGACCGATACCGCGGAGCGTTCAGCGGTTCGGCGGGCGCGGGATTACCTGACGCAGCATTACGC
GACCGATCTGGGTCTGGAAGAGCTTGCCGCGGTTGCCGGGCTCAGCCGCGCGCATCTGATCCGCGCCTTCCGCAAGGAAT
TCCATATCACGCCGCACGCCTTCCTTACCGATATCCGCATCAGGAGCGCGCGCCGCAGGCTGCAGGCCGGCGAGTTGCCG
GCGGAGGTCGCACTGGAATGCGGGTTTGCCGACCAGGCGCATTTCACCAGGCACTTCAAGGCCCGTACCGGATTAACGCC
CGGCCAGTATCGGGCGCGGTAA

Upstream 100 bases:

>100_bases
AGGGTCAGTTTCGCTGATCACTTTTGTTCAATAAGCGTCGCGGAAAAACTGCTATATCCGCCCGATGCAGAGCATCTCAC
AGGAACAGGCGACCGAAGCC

Downstream 100 bases:

>100_bases
TCACTTTCGTTCAAGACGTCTGTTCGGCACGGCTCTATGACCTCGGCATCAAGCGGAGGTTTGAACGTGCACAACAATGA
AATCTGGGCGGAGTTTTCAG

Product: putative AraC family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 273; Mature: 272

Protein sequence:

>273_residues
MPLAGAETTRFWRDPRFGGMECLSATFLTHEFAPHAHDTFSIGAIESGSQIATICGAREASGPGDLYLINPGETHDGAPT
DGGYRYRMIYPDLSLFREILEDITGRVFHGTPAFGKQILHDPKLAAAFLGAHRTLEAGAGALETGQSMFLVLDAMFRQHG
SSIIVPTDTAERSAVRRARDYLTQHYATDLGLEELAAVAGLSRAHLIRAFRKEFHITPHAFLTDIRIRSARRRLQAGELP
AEVALECGFADQAHFTRHFKARTGLTPGQYRAR

Sequences:

>Translated_273_residues
MPLAGAETTRFWRDPRFGGMECLSATFLTHEFAPHAHDTFSIGAIESGSQIATICGAREASGPGDLYLINPGETHDGAPT
DGGYRYRMIYPDLSLFREILEDITGRVFHGTPAFGKQILHDPKLAAAFLGAHRTLEAGAGALETGQSMFLVLDAMFRQHG
SSIIVPTDTAERSAVRRARDYLTQHYATDLGLEELAAVAGLSRAHLIRAFRKEFHITPHAFLTDIRIRSARRRLQAGELP
AEVALECGFADQAHFTRHFKARTGLTPGQYRAR
>Mature_272_residues
PLAGAETTRFWRDPRFGGMECLSATFLTHEFAPHAHDTFSIGAIESGSQIATICGAREASGPGDLYLINPGETHDGAPTD
GGYRYRMIYPDLSLFREILEDITGRVFHGTPAFGKQILHDPKLAAAFLGAHRTLEAGAGALETGQSMFLVLDAMFRQHGS
SIIVPTDTAERSAVRRARDYLTQHYATDLGLEELAAVAGLSRAHLIRAFRKEFHITPHAFLTDIRIRSARRRLQAGELPA
EVALECGFADQAHFTRHFKARTGLTPGQYRAR

Specific function: Repressor For The Chbbcarfg Operon (Probable). [C]

COG id: COG2207

COG function: function code K; AraC-type DNA-binding domain-containing proteins

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR003313
- InterPro:   IPR018060 [H]

Pfam domain/function: PF02311 AraC_binding; PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 30031; Mature: 29900

Theoretical pI: Translated: 7.48; Mature: 7.48

Prosite motif: PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPLAGAETTRFWRDPRFGGMECLSATFLTHEFAPHAHDTFSIGAIESGSQIATICGAREA
CCCCCCCHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCCCEEECCCCCCCCEEEECCCCCC
SGPGDLYLINPGETHDGAPTDGGYRYRMIYPDLSLFREILEDITGRVFHGTPAFGKQILH
CCCCCEEEECCCCCCCCCCCCCCEEEEEECCCHHHHHHHHHHHCCEEEECCHHHHHHHHC
DPKLAAAFLGAHRTLEAGAGALETGQSMFLVLDAMFRQHGSSIIVPTDTAERSAVRRARD
CHHHHHHHHHHHHHHHHCCCCHHCCCHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHH
YLTQHYATDLGLEELAAVAGLSRAHLIRAFRKEFHITPHAFLTDIRIRSARRRLQAGELP
HHHHHHHHHCCHHHHHHHHCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCC
AEVALECGFADQAHFTRHFKARTGLTPGQYRAR
HHHHHCCCCCCHHHHHHHHHHHCCCCCCCCCCC
>Mature Secondary Structure 
PLAGAETTRFWRDPRFGGMECLSATFLTHEFAPHAHDTFSIGAIESGSQIATICGAREA
CCCCCCHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCCCEEECCCCCCCCEEEECCCCCC
SGPGDLYLINPGETHDGAPTDGGYRYRMIYPDLSLFREILEDITGRVFHGTPAFGKQILH
CCCCCEEEECCCCCCCCCCCCCCEEEEEECCCHHHHHHHHHHHCCEEEECCHHHHHHHHC
DPKLAAAFLGAHRTLEAGAGALETGQSMFLVLDAMFRQHGSSIIVPTDTAERSAVRRARD
CHHHHHHHHHHHHHHHHCCCCHHCCCHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHH
YLTQHYATDLGLEELAAVAGLSRAHLIRAFRKEFHITPHAFLTDIRIRSARRRLQAGELP
HHHHHHHHHCCHHHHHHHHCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCC
AEVALECGFADQAHFTRHFKARTGLTPGQYRAR
HHHHHCCCCCCHHHHHHHHHHHCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]