| Definition | Rhizobium etli CIAT 652 plasmid pC, complete sequence. |
|---|---|
| Accession | NC_010997 |
| Length | 1,091,523 |
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The map label for this gene is 190894429
Identifier: 190894429
GI number: 190894429
Start: 86777
End: 87904
Strand: Reverse
Name: 190894429
Synonym: RHECIAT_PC0000091
Alternate gene names: NA
Gene position: 87904-86777 (Counterclockwise)
Preceding gene: 190894432
Following gene: 190894428
Centisome position: 8.05
GC content: 62.15
Gene sequence:
>1128_bases ATGACCAAACTCCTTTCCATGAACCGCCGCAATTTTCTTCAGGCTTCTGCCGCTGCTGCCCTTGTCGGCGCCGCACCCGG CCTCCTCTCCTCGCGCGCCCTTGCCCAGAGCGCCCTTACCGTCGGCTTCATCTATGTCGGTCCGAAGGACGACTATGGCT ACAACCAGGCGCATGCCGAGGGTGCAGCCGCCGTCAAGGCGCTGCCCGGCGTCACCGTCGTTGAGGAAGAGAACGTGCCG GAGACGGTGGACGTCCAGAAGACGATGGAATCGATGATCAACCTCGATGGCGCGGCTCTGCTTTTCCCGACCTCCTTCGG CTATTTCGATCCGCACATGCTGGCGATGGCCGCCAAATATCCCGATACCCAGTTCCGCCATTGCGGCGGCCTCTGGCAGG AGGGCAAGCACCCGGCCAATACCGGCTCTTATTTCGGTTACATCTTTCAGGGCCAGTATCTGAACGGCATCGCCGCCGGC CATACGACGAAAAGCAAGAAGATCGGCTTCGTCGCCGCCAAGCCGATCCCGCAGGTGCTGCAGAACATCAATGCCTTCCT GCTCGGTGCACGCACCGTCGATCCGACGATTACCTGCCAGGTGATCTTCACCGGCGAATGGTCGCTCGCCGTCAAGGAAG CCGAAGCCACCAACGCATTGGTCGATCAAGGCGCCGATGTCATCACCTGCCATGTCGACAGCCCGAAGGTCGTGGTCGAG ACGGCCGCCGGCCGCGGCGCCTTCGTCTGCGGCTATCACGCCAACCAGAGCCCGCTCGCCCCCGAGAAATACCTGACCGG CGCCGAATGGGCCTGGGGCAATGTCTACAGCGATTTCGTCAAGAAGGCGCAGGCCGGCGAAAAGCTCGGCAACTTCGTGC GCGGCGGCCTGAAGGACGGGTTCGTCAAGATGAGCGCACTCGGTCCTGGTGTTTCCGACGGTGGCCGCAAGGCTTTCGAG GCCACCCATGCCGAGATGATGAAGGGCGGCTTCTCGGTCTTCAAGGGACCGCTCAAGGACAACAAGGGCAGCACGGTCGT GACCGCCGACAAGAGCTACGCCGAAGACGCGATCGAACTCGAAAGCATGAACTACCTGGTCGAGGGTGTTGTCGGGTCCA CGGCGTAA
Upstream 100 bases:
>100_bases ATTCCTATCGTGAAATCAAATATTTAATATTTGGCACGTCCATTGCATACACTTCCCCGTAACCAATGAACCGGCAGAAC CGCCATAAGGGAGCATTCCA
Downstream 100 bases:
>100_bases ACCGCGAAGGGAGAAGCGCCATGACCGTCCAGGCCAACGATCCCGCAATATCCATCGCCGAAACCCCGGCTTCGCTGCGC CACATCCTCGAATGGATCGC
Product: putative ABC transporter substrate-binding protein
Products: NA
Alternate protein names: Bmp Family Protein; Basic Membrane Protein; Lipoprotein; Bmp Family Membrane Protein; ABC Transporter Periplasmic/Surface Lipoprotein; ABC Transporter; Lipoprotein Periplasmic Protein; ABC Transporter Periplasmic Protein Surface Lipoprotein; Basic Membrane Lipoprotein Family; Twin-Arginine Translocation Pathway Signal; Outer Membrane Lipoprotein; Tat Pathway Signal Sequence/Basic Membrane Protein; Basic Membrane Lipoprotein Family Protein; Basic Membrane Protein Family Protein; Surface Lipoprotein; Signal Peptide Protein; ABC Transporter Periplasmic Protein; Med/BMP Family Lipoprotein
Number of amino acids: Translated: 375; Mature: 374
Protein sequence:
>375_residues MTKLLSMNRRNFLQASAAAALVGAAPGLLSSRALAQSALTVGFIYVGPKDDYGYNQAHAEGAAAVKALPGVTVVEEENVP ETVDVQKTMESMINLDGAALLFPTSFGYFDPHMLAMAAKYPDTQFRHCGGLWQEGKHPANTGSYFGYIFQGQYLNGIAAG HTTKSKKIGFVAAKPIPQVLQNINAFLLGARTVDPTITCQVIFTGEWSLAVKEAEATNALVDQGADVITCHVDSPKVVVE TAAGRGAFVCGYHANQSPLAPEKYLTGAEWAWGNVYSDFVKKAQAGEKLGNFVRGGLKDGFVKMSALGPGVSDGGRKAFE ATHAEMMKGGFSVFKGPLKDNKGSTVVTADKSYAEDAIELESMNYLVEGVVGSTA
Sequences:
>Translated_375_residues MTKLLSMNRRNFLQASAAAALVGAAPGLLSSRALAQSALTVGFIYVGPKDDYGYNQAHAEGAAAVKALPGVTVVEEENVP ETVDVQKTMESMINLDGAALLFPTSFGYFDPHMLAMAAKYPDTQFRHCGGLWQEGKHPANTGSYFGYIFQGQYLNGIAAG HTTKSKKIGFVAAKPIPQVLQNINAFLLGARTVDPTITCQVIFTGEWSLAVKEAEATNALVDQGADVITCHVDSPKVVVE TAAGRGAFVCGYHANQSPLAPEKYLTGAEWAWGNVYSDFVKKAQAGEKLGNFVRGGLKDGFVKMSALGPGVSDGGRKAFE ATHAEMMKGGFSVFKGPLKDNKGSTVVTADKSYAEDAIELESMNYLVEGVVGSTA >Mature_374_residues TKLLSMNRRNFLQASAAAALVGAAPGLLSSRALAQSALTVGFIYVGPKDDYGYNQAHAEGAAAVKALPGVTVVEEENVPE TVDVQKTMESMINLDGAALLFPTSFGYFDPHMLAMAAKYPDTQFRHCGGLWQEGKHPANTGSYFGYIFQGQYLNGIAAGH TTKSKKIGFVAAKPIPQVLQNINAFLLGARTVDPTITCQVIFTGEWSLAVKEAEATNALVDQGADVITCHVDSPKVVVET AAGRGAFVCGYHANQSPLAPEKYLTGAEWAWGNVYSDFVKKAQAGEKLGNFVRGGLKDGFVKMSALGPGVSDGGRKAFEA THAEMMKGGFSVFKGPLKDNKGSTVVTADKSYAEDAIELESMNYLVEGVVGSTA
Specific function: Unknown
COG id: COG1744
COG function: function code R; Uncharacterized ABC-type transport system, periplasmic component/surface lipoprotein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 39707; Mature: 39576
Theoretical pI: Translated: 6.51; Mature: 6.51
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.1 %Cys (Translated Protein) 2.7 %Met (Translated Protein) 3.7 %Cys+Met (Translated Protein) 1.1 %Cys (Mature Protein) 2.4 %Met (Mature Protein) 3.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTKLLSMNRRNFLQASAAAALVGAAPGLLSSRALAQSALTVGFIYVGPKDDYGYNQAHAE CCCCHHCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCEEEEEEEECCCCCCCCCHHHHC GAAAVKALPGVTVVEEENVPETVDVQKTMESMINLDGAALLFPTSFGYFDPHMLAMAAKY HHHHHHHCCCEEEEECCCCCCCCHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHCC PDTQFRHCGGLWQEGKHPANTGSYFGYIFQGQYLNGIAAGHTTKSKKIGFVAAKPIPQVL CCCHHHHHCCHHHCCCCCCCCCCEEEEEEECCEECCEECCCCCCCCEEEEEECCCHHHHH QNINAFLLGARTVDPTITCQVIFTGEWSLAVKEAEATNALVDQGADVITCHVDSPKVVVE HCCCEEEEECEECCCEEEEEEEEECCEEEEEECHHHHHHHHHCCCCEEEEECCCCEEEEE TAAGRGAFVCGYHANQSPLAPEKYLTGAEWAWGNVYSDFVKKAQAGEKLGNFVRGGLKDG ECCCCCEEEEEECCCCCCCCHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCC FVKMSALGPGVSDGGRKAFEATHAEMMKGGFSVFKGPLKDNKGSTVVTADKSYAEDAIEL CEEEEECCCCCCCCCHHHHHHHHHHHHHCCHHHHCCCCCCCCCCEEEEECCHHHHHHHHH ESMNYLVEGVVGSTA HHHHHHHHHHCCCCC >Mature Secondary Structure TKLLSMNRRNFLQASAAAALVGAAPGLLSSRALAQSALTVGFIYVGPKDDYGYNQAHAE CCCHHCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCEEEEEEEECCCCCCCCCHHHHC GAAAVKALPGVTVVEEENVPETVDVQKTMESMINLDGAALLFPTSFGYFDPHMLAMAAKY HHHHHHHCCCEEEEECCCCCCCCHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHCC PDTQFRHCGGLWQEGKHPANTGSYFGYIFQGQYLNGIAAGHTTKSKKIGFVAAKPIPQVL CCCHHHHHCCHHHCCCCCCCCCCEEEEEEECCEECCEECCCCCCCCEEEEEECCCHHHHH QNINAFLLGARTVDPTITCQVIFTGEWSLAVKEAEATNALVDQGADVITCHVDSPKVVVE HCCCEEEEECEECCCEEEEEEEEECCEEEEEECHHHHHHHHHCCCCEEEEECCCCEEEEE TAAGRGAFVCGYHANQSPLAPEKYLTGAEWAWGNVYSDFVKKAQAGEKLGNFVRGGLKDG ECCCCCEEEEEECCCCCCCCHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCC FVKMSALGPGVSDGGRKAFEATHAEMMKGGFSVFKGPLKDNKGSTVVTADKSYAEDAIEL CEEEEECCCCCCCCCHHHHHHHHHHHHHCCHHHHCCCCCCCCCCEEEEECCHHHHHHHHH ESMNYLVEGVVGSTA HHHHHHHHHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA