| Definition | Rhizobium etli CIAT 652 plasmid pC, complete sequence. |
|---|---|
| Accession | NC_010997 |
| Length | 1,091,523 |
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The map label for this gene is 190894408
Identifier: 190894408
GI number: 190894408
Start: 67322
End: 67840
Strand: Reverse
Name: 190894408
Synonym: RHECIAT_PC0000070
Alternate gene names: NA
Gene position: 67840-67322 (Counterclockwise)
Preceding gene: 190894409
Following gene: 190894404
Centisome position: 6.22
GC content: 61.66
Gene sequence:
>519_bases ATGCGTACGGTCCTGATCGCAACTTTGCTTTTGCTGCCTTGTCTCCCTGCCGGGGCAACGGCGTCGGAGGTCGGCTTTTT GCAGTCTTTGTCCGGCGACTGGAGTGGGACCGGAAAGGTGCTCACGCGGATTGGCGGCACGAACCTGAATGTCTCCTGCA CCCTCCGATCTGATGCCAGCGCATCCACCGTTTCGATGAACGGGAAATGTCGCGGCCTTGCGGTTTTCACCAGAACCTTC TCGGCGACCGTCAAGGCCGCCGGAGAGCGTTATACCGGCAATTATGTCGGGCCGTCAGGGCTGCCGTCGAAGCTTGCGGG CAGCAGGAAAGGGACTGCCCTCAACCTGCGTGTGACCTGGGCGCGGCTGGTCAACGGTGATCGGGACGCGGTTTTGATGA TCGAGAAAGTCGGGCAGGACCGGCTTAGGCTGCAGACCGTCGACCAGGATCCTGCTTCCGGCCAGTCGGTCGTGACCAGT CGCATCGATTTGCAGCGGCCCTCGACGGCAGAACGATAG
Upstream 100 bases:
>100_bases AGGAAGCGGGCCGTCCTTCAGGCGCGACAAAAACGATCTGACGGCGGGAACAATCTGCCATGCTGACCTGTTGTTCGGAC ACGCAAACCCGGGGGCTGCC
Downstream 100 bases:
>100_bases CCGACCGCGCGCTGCTCTTAGAACAGGATGTTACCGAAACCGCTCACACTTTTCGGCATCATGCTCCAGCGGCGCAACAT CCCGATCGCTGCCTTGGTTT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 172; Mature: 172
Protein sequence:
>172_residues MRTVLIATLLLLPCLPAGATASEVGFLQSLSGDWSGTGKVLTRIGGTNLNVSCTLRSDASASTVSMNGKCRGLAVFTRTF SATVKAAGERYTGNYVGPSGLPSKLAGSRKGTALNLRVTWARLVNGDRDAVLMIEKVGQDRLRLQTVDQDPASGQSVVTS RIDLQRPSTAER
Sequences:
>Translated_172_residues MRTVLIATLLLLPCLPAGATASEVGFLQSLSGDWSGTGKVLTRIGGTNLNVSCTLRSDASASTVSMNGKCRGLAVFTRTF SATVKAAGERYTGNYVGPSGLPSKLAGSRKGTALNLRVTWARLVNGDRDAVLMIEKVGQDRLRLQTVDQDPASGQSVVTS RIDLQRPSTAER >Mature_172_residues MRTVLIATLLLLPCLPAGATASEVGFLQSLSGDWSGTGKVLTRIGGTNLNVSCTLRSDASASTVSMNGKCRGLAVFTRTF SATVKAAGERYTGNYVGPSGLPSKLAGSRKGTALNLRVTWARLVNGDRDAVLMIEKVGQDRLRLQTVDQDPASGQSVVTS RIDLQRPSTAER
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 18126; Mature: 18126
Theoretical pI: Translated: 10.81; Mature: 10.81
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.7 %Cys (Translated Protein) 1.7 %Met (Translated Protein) 3.5 %Cys+Met (Translated Protein) 1.7 %Cys (Mature Protein) 1.7 %Met (Mature Protein) 3.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRTVLIATLLLLPCLPAGATASEVGFLQSLSGDWSGTGKVLTRIGGTNLNVSCTLRSDAS CHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCCCCCCCCEEEEECCCCCEEEEEECCCCC ASTVSMNGKCRGLAVFTRTFSATVKAAGERYTGNYVGPSGLPSKLAGSRKGTALNLRVTW CEEEEECCCCCEEEEEEHHHHHHHHHCCCCCCCCCCCCCCCCHHHCCCCCCCEEEEEEEE ARLVNGDRDAVLMIEKVGQDRLRLQTVDQDPASGQSVVTSRIDLQRPSTAER EEHHCCCCCEEEEEECCCCCCEEEEECCCCCCCCCCEEEHEEECCCCCCCCC >Mature Secondary Structure MRTVLIATLLLLPCLPAGATASEVGFLQSLSGDWSGTGKVLTRIGGTNLNVSCTLRSDAS CHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCCCCCCCCEEEEECCCCCEEEEEECCCCC ASTVSMNGKCRGLAVFTRTFSATVKAAGERYTGNYVGPSGLPSKLAGSRKGTALNLRVTW CEEEEECCCCCEEEEEEHHHHHHHHHCCCCCCCCCCCCCCCCHHHCCCCCCCEEEEEEEE ARLVNGDRDAVLMIEKVGQDRLRLQTVDQDPASGQSVVTSRIDLQRPSTAER EEHHCCCCCEEEEEECCCCCCEEEEECCCCCCCCCCEEEHEEECCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA