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The map label for this gene is cph2 [H]

Identifier: 190894404

GI number: 190894404

Start: 63478

End: 64770

Strand: Reverse

Name: cph2 [H]

Synonym: RHECIAT_PC0000066

Alternate gene names: 190894404

Gene position: 64770-63478 (Counterclockwise)

Preceding gene: 190894408

Following gene: 190894402

Centisome position: 5.93

GC content: 63.11

Gene sequence:

>1293_bases
ATGAATGATGCCAAAAGTAAGTCCTTCGACCGCCCTGCAGCCGGGTCCTTTTCGCCGCAGCCGCTGACCGGCGCGATGGC
TGATGAAGTCGAACGCCTTTTATCCGGCCGAACCCGCGATATTCGCCTGACGGGCGACCTGCGGCGCCGCTTCGATGAAA
GGCTATGGCGCCAGAGGGCGAAAGTCATCCGGTCCTGGATGACATGGGTCGCTTTCGTCGACGTTCTGACATTGGCGCTG
AATGCCATGCTGCTTCCTCGTGAGGTCGCCCTGCTGATGGTCGCCCCGGCCTGCCTGCTGCCACCGGCAGCGATCCTGAC
GGCGCTCGTCTGGACCAAGCCGCGCCCTACGGCGGTTGAACGCGCATCGCTTCTCGGCGGAATGTGCCTCATCCTGCTGT
CGGTCGCGCTCGTCGGCGTCTTTGCAGGCGGCGAATTCTACGAGCGCCATCTGACCATCATGCTGTTCGTTGCCACGAGC
GCAATCACCATTTTCAGCGTGCCGCTCGCCTGGACGATCGCGATCGCCTGTTACGCCCTCTGCCTCTATTTCACCCTTCA
ATGGTACAACCCGCTCGTGGAAGCGGGCAGTGTCGTGGCCGGAACCCTGTTCTTTTCCTGCGGGATCATCGCGACGGTGG
TCGCAAGGCGAACGATGAACATCCTGGCGCAGAAGACATTTCTTCTGGACTGCAGGGATCAGCGCCGCGTCGCAGAATTG
GCCGATGCGAATGCCCGATTGGAGCGGCTGGCCAGAACCGATCCGTTGACGGGGATCGCCAACCGCCGTTGGATGATGGA
AACGCTCGAGAGCCTCTGGCGCCACGGCCGTGAAACCGGCATCGTCGCCATGCTCATGTGCGACATCGACCACTTCAAGG
CGCTGAACGACAAGCTCGGGCATGGCGAAGGCGACCGCTGCCTCGTCAAGGTCGCCGGTATCATCCAGAGCTGCGTGCGC
GCCGATCGCGACCTCGTCTCACGACATGGCGGCGAGGAATTTCTCATCGTCCTTCCTGATGTCGAAGAAGAAGAGGCTGT
CGCGGTGGCGAAGCGGATACGTGAAAGCGTGGAAGCCGCCGCACTTCCGAACCCGTCGTCCAGCGTCGGCCCGTCGGTGA
CGCTGAGCGTCGGGGTGGCCTTCAAATCGGCGGCCGACACCGGCGTTACCCTGGCCAATCTCCAGCACGAAGCCGACGTG
GCTCTTTATCGCGCCAAGGAAGCAGGCCGCAACCAGGTCTGCGTCTTCCACCGTCCGCCACCCGCTGCCGAGCAGATCGC
CGCCCGCCGCTGA

Upstream 100 bases:

>100_bases
AGATCACGCGGCCAACTTGTTTACAAAATATCAACACAGGAATCCGGACGTCTGCGTGGCAGCCTTGCCGAGTTTCCGAT
CGCGGCTAGATAGAGCAAAG

Downstream 100 bases:

>100_bases
AGGCGCAGCTGGGCCGGAGGTTTCGATCGACGCGCATCGGCGCGATCAGCGTCAGCGGATCACCAATACCGCCGCCATGG
CGACGGCCGAGATGAAGCCG

Product: putative two-component response regulator protein

Products: NA

Alternate protein names: Bacteriophytochrome cph2 [H]

Number of amino acids: Translated: 430; Mature: 430

Protein sequence:

>430_residues
MNDAKSKSFDRPAAGSFSPQPLTGAMADEVERLLSGRTRDIRLTGDLRRRFDERLWRQRAKVIRSWMTWVAFVDVLTLAL
NAMLLPREVALLMVAPACLLPPAAILTALVWTKPRPTAVERASLLGGMCLILLSVALVGVFAGGEFYERHLTIMLFVATS
AITIFSVPLAWTIAIACYALCLYFTLQWYNPLVEAGSVVAGTLFFSCGIIATVVARRTMNILAQKTFLLDCRDQRRVAEL
ADANARLERLARTDPLTGIANRRWMMETLESLWRHGRETGIVAMLMCDIDHFKALNDKLGHGEGDRCLVKVAGIIQSCVR
ADRDLVSRHGGEEFLIVLPDVEEEEAVAVAKRIRESVEAAALPNPSSSVGPSVTLSVGVAFKSAADTGVTLANLQHEADV
ALYRAKEAGRNQVCVFHRPPPAAEQIAARR

Sequences:

>Translated_430_residues
MNDAKSKSFDRPAAGSFSPQPLTGAMADEVERLLSGRTRDIRLTGDLRRRFDERLWRQRAKVIRSWMTWVAFVDVLTLAL
NAMLLPREVALLMVAPACLLPPAAILTALVWTKPRPTAVERASLLGGMCLILLSVALVGVFAGGEFYERHLTIMLFVATS
AITIFSVPLAWTIAIACYALCLYFTLQWYNPLVEAGSVVAGTLFFSCGIIATVVARRTMNILAQKTFLLDCRDQRRVAEL
ADANARLERLARTDPLTGIANRRWMMETLESLWRHGRETGIVAMLMCDIDHFKALNDKLGHGEGDRCLVKVAGIIQSCVR
ADRDLVSRHGGEEFLIVLPDVEEEEAVAVAKRIRESVEAAALPNPSSSVGPSVTLSVGVAFKSAADTGVTLANLQHEADV
ALYRAKEAGRNQVCVFHRPPPAAEQIAARR
>Mature_430_residues
MNDAKSKSFDRPAAGSFSPQPLTGAMADEVERLLSGRTRDIRLTGDLRRRFDERLWRQRAKVIRSWMTWVAFVDVLTLAL
NAMLLPREVALLMVAPACLLPPAAILTALVWTKPRPTAVERASLLGGMCLILLSVALVGVFAGGEFYERHLTIMLFVATS
AITIFSVPLAWTIAIACYALCLYFTLQWYNPLVEAGSVVAGTLFFSCGIIATVVARRTMNILAQKTFLLDCRDQRRVAEL
ADANARLERLARTDPLTGIANRRWMMETLESLWRHGRETGIVAMLMCDIDHFKALNDKLGHGEGDRCLVKVAGIIQSCVR
ADRDLVSRHGGEEFLIVLPDVEEEEAVAVAKRIRESVEAAALPNPSSSVGPSVTLSVGVAFKSAADTGVTLANLQHEADV
ALYRAKEAGRNQVCVFHRPPPAAEQIAARR

Specific function: Photoreceptor which exists in two forms that are reversibly interconvertible by light:the R form that absorbs maximally in the red region of the spectrum and the FR form that absorbs maximally in the far-red region [H]

COG id: COG2199

COG function: function code T; FOG: GGDEF domain

Gene ontology:

Cell location: Integral Membrane Protein [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 GGDEF domains [H]

Homologues:

Organism=Escherichia coli, GI1787262, Length=168, Percent_Identity=40.4761904761905, Blast_Score=121, Evalue=1e-28,
Organism=Escherichia coli, GI1786584, Length=202, Percent_Identity=30.6930693069307, Blast_Score=101, Evalue=1e-22,
Organism=Escherichia coli, GI87081881, Length=185, Percent_Identity=36.2162162162162, Blast_Score=99, Evalue=4e-22,
Organism=Escherichia coli, GI1788085, Length=170, Percent_Identity=34.1176470588235, Blast_Score=98, Evalue=1e-21,
Organism=Escherichia coli, GI87082007, Length=183, Percent_Identity=37.7049180327869, Blast_Score=97, Evalue=2e-21,
Organism=Escherichia coli, GI1787541, Length=187, Percent_Identity=34.7593582887701, Blast_Score=95, Evalue=1e-20,
Organism=Escherichia coli, GI145693134, Length=162, Percent_Identity=38.2716049382716, Blast_Score=93, Evalue=3e-20,
Organism=Escherichia coli, GI1787802, Length=162, Percent_Identity=34.5679012345679, Blast_Score=92, Evalue=7e-20,
Organism=Escherichia coli, GI87081977, Length=184, Percent_Identity=30.4347826086957, Blast_Score=84, Evalue=2e-17,
Organism=Escherichia coli, GI1787816, Length=166, Percent_Identity=34.3373493975904, Blast_Score=83, Evalue=4e-17,
Organism=Escherichia coli, GI1788381, Length=194, Percent_Identity=31.9587628865979, Blast_Score=80, Evalue=3e-16,
Organism=Escherichia coli, GI1788956, Length=166, Percent_Identity=33.7349397590361, Blast_Score=74, Evalue=2e-14,
Organism=Escherichia coli, GI1787056, Length=164, Percent_Identity=31.7073170731707, Blast_Score=70, Evalue=2e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR003018
- InterPro:   IPR016132
- InterPro:   IPR001294
- InterPro:   IPR013515 [H]

Pfam domain/function: PF00563 EAL; PF01590 GAF; PF00990 GGDEF; PF00360 Phytochrome [H]

EC number: NA

Molecular weight: Translated: 47221; Mature: 47221

Theoretical pI: Translated: 8.42; Mature: 8.42

Prosite motif: PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.3 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
5.1 %Cys+Met (Translated Protein)
2.3 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
5.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNDAKSKSFDRPAAGSFSPQPLTGAMADEVERLLSGRTRDIRLTGDLRRRFDERLWRQRA
CCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCEEEECHHHHHHHHHHHHHHHH
KVIRSWMTWVAFVDVLTLALNAMLLPREVALLMVAPACLLPPAAILTALVWTKPRPTAVE
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHCCHHHHHHHHHHCCCCCHHHH
RASLLGGMCLILLSVALVGVFAGGEFYERHLTIMLFVATSAITIFSVPLAWTIAIACYAL
HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
CLYFTLQWYNPLVEAGSVVAGTLFFSCGIIATVVARRTMNILAQKTFLLDCRDQRRVAEL
HHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHH
ADANARLERLARTDPLTGIANRRWMMETLESLWRHGRETGIVAMLMCDIDHFKALNDKLG
HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHCHHHHHHHHHHCC
HGEGDRCLVKVAGIIQSCVRADRDLVSRHGGEEFLIVLPDVEEEEAVAVAKRIRESVEAA
CCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHH
ALPNPSSSVGPSVTLSVGVAFKSAADTGVTLANLQHEADVALYRAKEAGRNQVCVFHRPP
CCCCCCCCCCCCEEEEEEEHHHCCCCCCCCHHHCCHHHHHHHHHHHHCCCCCEEEEECCC
PAAEQIAARR
CHHHHHHCCC
>Mature Secondary Structure
MNDAKSKSFDRPAAGSFSPQPLTGAMADEVERLLSGRTRDIRLTGDLRRRFDERLWRQRA
CCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCEEEECHHHHHHHHHHHHHHHH
KVIRSWMTWVAFVDVLTLALNAMLLPREVALLMVAPACLLPPAAILTALVWTKPRPTAVE
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHCCHHHHHHHHHHCCCCCHHHH
RASLLGGMCLILLSVALVGVFAGGEFYERHLTIMLFVATSAITIFSVPLAWTIAIACYAL
HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
CLYFTLQWYNPLVEAGSVVAGTLFFSCGIIATVVARRTMNILAQKTFLLDCRDQRRVAEL
HHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHH
ADANARLERLARTDPLTGIANRRWMMETLESLWRHGRETGIVAMLMCDIDHFKALNDKLG
HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHCHHHHHHHHHHCC
HGEGDRCLVKVAGIIQSCVRADRDLVSRHGGEEFLIVLPDVEEEEAVAVAKRIRESVEAA
CCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHH
ALPNPSSSVGPSVTLSVGVAFKSAADTGVTLANLQHEADVALYRAKEAGRNQVCVFHRPP
CCCCCCCCCCCCEEEEEEEHHHCCCCCCCCHHHCCHHHHHHHHHHHHCCCCCEEEEECCC
PAAEQIAARR
CHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8590279; 8905231; 10978170; 11063585 [H]