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The map label for this gene is ydfH [C]

Identifier: 190894402

GI number: 190894402

Start: 62293

End: 62988

Strand: Reverse

Name: ydfH [C]

Synonym: RHECIAT_PC0000064

Alternate gene names: 190894402

Gene position: 62988-62293 (Counterclockwise)

Preceding gene: 190894404

Following gene: 190894401

Centisome position: 5.77

GC content: 61.64

Gene sequence:

>696_bases
ATGAATGCCGAGATTGCCAGTCCTGACCGCAAGGCCAGCCTCGAACTTGCGCTGCGCAGGCGCATCCTCACAATGGAGCT
GCCGCCGGGTTCGGTGCTTGATGAAGTGGCGTTAGGCGAGGAGTTCGGGCTCTCCCGTCCGCCGGTGCGCGAGCTGATGC
GGCAGATGGCCGGCGAGGGTTATATCGAACTCGAGACCAACCGCGCCGCCCGCGTCAGTTCGATGAGTTATCAGTCGTTG
CGCGACTTCTTCCTGCTCGCGCCGATGATCTATATTACCGCTAACAAGCTCGCGGCCGAGAACCGGACGAAAGCCGAACT
CGAGGTCCTCAAAAAGATCCAGCGCTCCTTCCGCAAGGCGGTCGAGGACTGCGATGTCGAAAGCCGCGTCTTCTACAACG
ACCAGTTCCACCGCCAGATCGGCGAAATGGCCCATAATGTCTACGTCGTCCCGAGCCTGCGCCGCCTGCAGATCGACCAC
GCCCGCATCGGCAAAATCTTCTACCAGCATCCGAATACGCCGCGCATGCAGGAGGAGCTCGAGCTGGCATCGGATCAGCA
CGAGGAGATGATCGAGGCAATCGAGCGGCGTGACGCAGAAACCTCCGGTGAGCTGGCGCGTCTCCATATCGAGCTCTCCC
GGCGGAACATGGCCATGTACGCGGCCCCGGAAGGGTTGGAGACGCCGACCCTTTGA

Upstream 100 bases:

>100_bases
TTGTCAGGCCGAATCCCGATGCGAAGAGCGGTTAGCGCTTGACGTTTCGGTATTGTCTACCTAATGTCTTCTAAAAGAAT
TATGAGAGGATTGCGACGAG

Downstream 100 bases:

>100_bases
GCCGCCCGAGATCAATAGACACAGCTCAAGGCAATCTGGCTCGACCTTTCGGCCTAAGACAATGGGACTTCAATCGATGA
CCACCTTTCCCTTCCCAGGA

Product: putative GntR family transcriptional regulator

Products: NA

Alternate protein names: Transcriptional Regulator GntR Family; Transcriptional Regulator; Transcriptional Regulator Gntr Family; GntR Family Regulatory Protein; GntR-Family Transcriptional Regulator; GntR Domain-Containing Protein; Transcriptional Regulatory Protein; FCD Domain Protein; Transcriptional Regulator Protein; Transcriptional Repressor MdcY; Transcriptional Regulator GntR; Gntr Family Transcriptional Regulator; GntR Family Regulatory; Transcriptional Regulatory Protein GntR Family; GntR-Like; Regulatory Protein; Transcriptional Regulator Protein GntR Family; Transcription Regulator Family Protein; GntR Family Transcription Regulator; Transcription Regulator Protein; GntR Domain Protein; Regulator PutR For Proline Utilization GntR Family; Transcriptional Regulator GntR Family Protein; GntR Family Transcription Regulator Protein; Regulatory Protein GntR HTH; Transcriptional Regulator GNTR Family

Number of amino acids: Translated: 231; Mature: 231

Protein sequence:

>231_residues
MNAEIASPDRKASLELALRRRILTMELPPGSVLDEVALGEEFGLSRPPVRELMRQMAGEGYIELETNRAARVSSMSYQSL
RDFFLLAPMIYITANKLAAENRTKAELEVLKKIQRSFRKAVEDCDVESRVFYNDQFHRQIGEMAHNVYVVPSLRRLQIDH
ARIGKIFYQHPNTPRMQEELELASDQHEEMIEAIERRDAETSGELARLHIELSRRNMAMYAAPEGLETPTL

Sequences:

>Translated_231_residues
MNAEIASPDRKASLELALRRRILTMELPPGSVLDEVALGEEFGLSRPPVRELMRQMAGEGYIELETNRAARVSSMSYQSL
RDFFLLAPMIYITANKLAAENRTKAELEVLKKIQRSFRKAVEDCDVESRVFYNDQFHRQIGEMAHNVYVVPSLRRLQIDH
ARIGKIFYQHPNTPRMQEELELASDQHEEMIEAIERRDAETSGELARLHIELSRRNMAMYAAPEGLETPTL
>Mature_231_residues
MNAEIASPDRKASLELALRRRILTMELPPGSVLDEVALGEEFGLSRPPVRELMRQMAGEGYIELETNRAARVSSMSYQSL
RDFFLLAPMIYITANKLAAENRTKAELEVLKKIQRSFRKAVEDCDVESRVFYNDQFHRQIGEMAHNVYVVPSLRRLQIDH
ARIGKIFYQHPNTPRMQEELELASDQHEEMIEAIERRDAETSGELARLHIELSRRNMAMYAAPEGLETPTL

Specific function: Unknown

COG id: COG1802

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 26558; Mature: 26558

Theoretical pI: Translated: 5.70; Mature: 5.70

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
4.8 %Met     (Translated Protein)
5.2 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
4.8 %Met     (Mature Protein)
5.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNAEIASPDRKASLELALRRRILTMELPPGSVLDEVALGEEFGLSRPPVRELMRQMAGEG
CCCCCCCCCHHHHHHHHHHHHHHEEECCCCHHHHHHHCCHHCCCCCCHHHHHHHHHCCCC
YIELETNRAARVSSMSYQSLRDFFLLAPMIYITANKLAAENRTKAELEVLKKIQRSFRKA
EEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
VEDCDVESRVFYNDQFHRQIGEMAHNVYVVPSLRRLQIDHARIGKIFYQHPNTPRMQEEL
HHHCCCCCCEEECHHHHHHHHHHHHCEEECCCHHHHHHHHHHHHHHHHCCCCCCCHHHHH
ELASDQHEEMIEAIERRDAETSGELARLHIELSRRNMAMYAAPEGLETPTL
HHHCCHHHHHHHHHHHCCCCCCCCEEEEEEEECCCCEEEEECCCCCCCCCC
>Mature Secondary Structure
MNAEIASPDRKASLELALRRRILTMELPPGSVLDEVALGEEFGLSRPPVRELMRQMAGEG
CCCCCCCCCHHHHHHHHHHHHHHEEECCCCHHHHHHHCCHHCCCCCCHHHHHHHHHCCCC
YIELETNRAARVSSMSYQSLRDFFLLAPMIYITANKLAAENRTKAELEVLKKIQRSFRKA
EEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
VEDCDVESRVFYNDQFHRQIGEMAHNVYVVPSLRRLQIDHARIGKIFYQHPNTPRMQEEL
HHHCCCCCCEEECHHHHHHHHHHHHCEEECCCHHHHHHHHHHHHHHHHCCCCCCCHHHHH
ELASDQHEEMIEAIERRDAETSGELARLHIELSRRNMAMYAAPEGLETPTL
HHHCCHHHHHHHHHHHCCCCCCCCEEEEEEEECCCCEEEEECCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA