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The map label for this gene is ycfH [C]

Identifier: 190571255

GI number: 190571255

Start: 929834

End: 930622

Strand: Reverse

Name: ycfH [C]

Synonym: WPa_0856

Alternate gene names: 190571255

Gene position: 930622-929834 (Counterclockwise)

Preceding gene: 190571256

Following gene: 190571247

Centisome position: 62.78

GC content: 33.08

Gene sequence:

>789_bases
ATGATAGTTGATTCTCATTGTCATCTAATTTATTTTTCTGATGATGAAATACCAAAGGTAATTTCAAGAGCAGAGCAAAA
TGGTGTGAGAATTTTGCATAACATATGTATAAGCATTAATGATATCCCTAAATTATTAAAAATCTCTTCATCCTATGATC
AAGTCTACTGCTCCGTTGGTATACATCCGCTTGATACTACTGTGGAAAAAGGTGAGTGTATAAATGCTGATGAATTGATT
GAATTTACTAAGGGCAAAAAGGTAATTAGTATCGGTGAAACCGGATTAGATTTTTATAAATCTGATAACAAAAGCAATCA
AAAAAAAAGTTTTGCATCACACATAGAAGCGGCAAAAGTAACAGGATTACCTTTAGTTATTCACACTAGAAGTGCTGATA
GTGAGATGATTGATATGTTAAATTCAGAAATGAAGAAGGACGCTTTTAGTGGAGTAATGCATTGCTTTGCTTCTTCTAAA
GAGCTTGCTTATAAGGCTATGGACTTGGGATTATACATTTCATTTTCTGGAATTATTACTTTTAAAAATGCGAACTTACT
AAGAGAAATTGCACAAAATGTGCCACGTGAGCGTGTTTTAGTTGAAACTGATGCACCTTACCTGTCACCTGAGCCTTACA
GAGGAAAAAAAAATGAACCAGCAATGGTGAAATACGTTGTGAATTGTTTAGCGAAATTATGGAATGAATCGCCAGAAGAA
GTAGCAAAAATAACTACAAATAATTTTTTTAGACTGTTTTCGAAGCTTGAGCTCAAAGAAATTCTATAG

Upstream 100 bases:

>100_bases
CAAAATGTGGATGATTTGGTAGCCAGTGCTATACCGTTCAAAAAAGAAGTTTATAAAAAAGTGATAGAAGAGTTTTCTTC
TATCATAAAAGGATCTATTT

Downstream 100 bases:

>100_bases
GGCAATTAATTTAGCTGACAGAGCTCTTTTACTGCACTTACAGATTTATAAAACATCTCTTGTTCACTATCGTTCATTTT
AACTTCTAGAACTTTCTCAA

Product: deoxyribonuclease, TatD family

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 262; Mature: 262

Protein sequence:

>262_residues
MIVDSHCHLIYFSDDEIPKVISRAEQNGVRILHNICISINDIPKLLKISSSYDQVYCSVGIHPLDTTVEKGECINADELI
EFTKGKKVISIGETGLDFYKSDNKSNQKKSFASHIEAAKVTGLPLVIHTRSADSEMIDMLNSEMKKDAFSGVMHCFASSK
ELAYKAMDLGLYISFSGIITFKNANLLREIAQNVPRERVLVETDAPYLSPEPYRGKKNEPAMVKYVVNCLAKLWNESPEE
VAKITTNNFFRLFSKLELKEIL

Sequences:

>Translated_262_residues
MIVDSHCHLIYFSDDEIPKVISRAEQNGVRILHNICISINDIPKLLKISSSYDQVYCSVGIHPLDTTVEKGECINADELI
EFTKGKKVISIGETGLDFYKSDNKSNQKKSFASHIEAAKVTGLPLVIHTRSADSEMIDMLNSEMKKDAFSGVMHCFASSK
ELAYKAMDLGLYISFSGIITFKNANLLREIAQNVPRERVLVETDAPYLSPEPYRGKKNEPAMVKYVVNCLAKLWNESPEE
VAKITTNNFFRLFSKLELKEIL
>Mature_262_residues
MIVDSHCHLIYFSDDEIPKVISRAEQNGVRILHNICISINDIPKLLKISSSYDQVYCSVGIHPLDTTVEKGECINADELI
EFTKGKKVISIGETGLDFYKSDNKSNQKKSFASHIEAAKVTGLPLVIHTRSADSEMIDMLNSEMKKDAFSGVMHCFASSK
ELAYKAMDLGLYISFSGIITFKNANLLREIAQNVPRERVLVETDAPYLSPEPYRGKKNEPAMVKYVVNCLAKLWNESPEE
VAKITTNNFFRLFSKLELKEIL

Specific function: Unknown

COG id: COG0084

COG function: function code L; Mg-dependent DNase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the tatD DNase family [H]

Homologues:

Organism=Homo sapiens, GI14042943, Length=270, Percent_Identity=29.2592592592593, Blast_Score=107, Evalue=1e-23,
Organism=Homo sapiens, GI225903439, Length=247, Percent_Identity=29.1497975708502, Blast_Score=99, Evalue=4e-21,
Organism=Homo sapiens, GI226061853, Length=275, Percent_Identity=27.2727272727273, Blast_Score=89, Evalue=4e-18,
Organism=Homo sapiens, GI110349730, Length=269, Percent_Identity=27.1375464684015, Blast_Score=89, Evalue=4e-18,
Organism=Homo sapiens, GI110349734, Length=270, Percent_Identity=27.7777777777778, Blast_Score=89, Evalue=5e-18,
Organism=Homo sapiens, GI226061614, Length=262, Percent_Identity=24.8091603053435, Blast_Score=78, Evalue=8e-15,
Organism=Homo sapiens, GI225903424, Length=163, Percent_Identity=29.4478527607362, Blast_Score=72, Evalue=5e-13,
Organism=Homo sapiens, GI226061595, Length=230, Percent_Identity=26.0869565217391, Blast_Score=69, Evalue=4e-12,
Organism=Escherichia coli, GI1787342, Length=258, Percent_Identity=38.7596899224806, Blast_Score=194, Evalue=5e-51,
Organism=Escherichia coli, GI87082439, Length=260, Percent_Identity=28.4615384615385, Blast_Score=118, Evalue=4e-28,
Organism=Escherichia coli, GI48994985, Length=242, Percent_Identity=27.2727272727273, Blast_Score=109, Evalue=2e-25,
Organism=Caenorhabditis elegans, GI17559024, Length=277, Percent_Identity=26.7148014440433, Blast_Score=87, Evalue=1e-17,
Organism=Caenorhabditis elegans, GI71980746, Length=264, Percent_Identity=26.8939393939394, Blast_Score=83, Evalue=1e-16,
Organism=Caenorhabditis elegans, GI17543026, Length=182, Percent_Identity=30.2197802197802, Blast_Score=73, Evalue=1e-13,
Organism=Caenorhabditis elegans, GI17565396, Length=182, Percent_Identity=29.1208791208791, Blast_Score=67, Evalue=8e-12,
Organism=Drosophila melanogaster, GI24648690, Length=272, Percent_Identity=27.2058823529412, Blast_Score=96, Evalue=2e-20,
Organism=Drosophila melanogaster, GI221330018, Length=270, Percent_Identity=26.2962962962963, Blast_Score=83, Evalue=2e-16,
Organism=Drosophila melanogaster, GI24586117, Length=270, Percent_Identity=26.2962962962963, Blast_Score=83, Evalue=2e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR015992
- InterPro:   IPR001130
- InterPro:   IPR018228
- InterPro:   IPR012278
- InterPro:   IPR015991 [H]

Pfam domain/function: PF01026 TatD_DNase [H]

EC number: 3.1.21.- [C]

Molecular weight: Translated: 29502; Mature: 29502

Theoretical pI: Translated: 6.62; Mature: 6.62

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.3 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
5.0 %Cys+Met (Translated Protein)
2.3 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
5.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIVDSHCHLIYFSDDEIPKVISRAEQNGVRILHNICISINDIPKLLKISSSYDQVYCSVG
CEECCCEEEEEECCCCHHHHHHHHHHCCHHHHHHHHHCCCCHHHHHHHCCCHHEEEEECC
IHPLDTTVEKGECINADELIEFTKGKKVISIGETGLDFYKSDNKSNQKKSFASHIEAAKV
CCCCCCCCCCCCCCCHHHHHHHHCCCEEEEECCCCCHHHCCCCCCHHHHHHHHHHHHHHC
TGLPLVIHTRSADSEMIDMLNSEMKKDAFSGVMHCFASSKELAYKAMDLGLYISFSGIIT
CCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHEEEEEEEEEEEE
FKNANLLREIAQNVPRERVLVETDAPYLSPEPYRGKKNEPAMVKYVVNCLAKLWNESPEE
ECCHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCHHH
VAKITTNNFFRLFSKLELKEIL
HHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MIVDSHCHLIYFSDDEIPKVISRAEQNGVRILHNICISINDIPKLLKISSSYDQVYCSVG
CEECCCEEEEEECCCCHHHHHHHHHHCCHHHHHHHHHCCCCHHHHHHHCCCHHEEEEECC
IHPLDTTVEKGECINADELIEFTKGKKVISIGETGLDFYKSDNKSNQKKSFASHIEAAKV
CCCCCCCCCCCCCCCHHHHHHHHCCCEEEEECCCCCHHHCCCCCCHHHHHHHHHHHHHHC
TGLPLVIHTRSADSEMIDMLNSEMKKDAFSGVMHCFASSKELAYKAMDLGLYISFSGIIT
CCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHEEEEEEEEEEEE
FKNANLLREIAQNVPRERVLVETDAPYLSPEPYRGKKNEPAMVKYVVNCLAKLWNESPEE
ECCHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCHHH
VAKITTNNFFRLFSKLELKEIL
HHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]