| Definition | Geobacter lovleyi SZ chromosome, complete genome. |
|---|---|
| Accession | NC_010814 |
| Length | 3,917,761 |
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The map label for this gene is pilQ [H]
Identifier: 189424531
GI number: 189424531
Start: 1534288
End: 1536666
Strand: Reverse
Name: pilQ [H]
Synonym: Glov_1469
Alternate gene names: 189424531
Gene position: 1536666-1534288 (Counterclockwise)
Preceding gene: 189424532
Following gene: 189424530
Centisome position: 39.22
GC content: 58.68
Gene sequence:
>2379_bases ATGATGCCTACAATACAGCACGCGCTCCGGCTCCTGAGCGGGATACTGCTTGCGGCTGCACTCTGCCTGCCGGGCTGTTC CGCAGCCCAAAAGGCGTTTAGCAAAGGAGAAGAGCTGGAGCAGGAAGGCAACTTTGAGGCTGCCATGTATCGCTACGCCG AGGCCTTCAGCAAAAATGCTGCGGAGAGCAGCTACCGCCTCAGCTTTTTCAGGGCCCGTGAGGCAGCAGCCAAACAACGC TTCAAGGCCGGTACCGAGCTGATGTCCAAAGCGCTGTATGCCGCTGCTGAGGAACAGTTTCAGACGGCAGCGAGTCTTGA CCCGACCCAGGAACGGTTCAGACAGCTGGCTGACCAGGCCGCACGCCTCAACCAGGCAGACAAAATCTATCGCGAAGGGC TTGATTTTGAAAAGGCCAACAAGCCGCAGTATGCCCGCAGTGCCTTTCAACAGGCTTTTGAGCTCCGGCCCGATGCCAAA CTGTATCAGGAAGCGTTGCAACGGGTAGCAGGCAGCCCCGCGACCAGTCTGGCCGGTCGGGATCTGCAGCTTACATCGGT GAAGCCGTTGACGCTGAAGGCCAACGGCACCAGACTGAAAGAGTTATTCAGCACCATCACCCGGCATTCCGGCATCAACT TTGTCTTTGATCCTGACTTCAAGGATCAACCCGCAACCCTCACCCTGGAAAACAGCGGTTTCCGCCAGGCACTCGATCTG CTGGCCGCCCTGCACAGGATTGACTATGCCGTTATCAACGAGAGCACGGTATTGATCTACCCGCAGAGTGCGGAGAAGAC CAAGCAGTACCAGGACATGCAGCTGCGCACCTTCCACCTGAACCACCTGGATGCCAAGAAGGCGGCCAACCTGATCAGGA CCATGCTGCAGGTCAGGCGGCTGTATATCAACGAGGATGCCAATGCCCTGGTGGTACGGGATACCAGTGATGTCACCGAT GTGATCGAAAAGATCCTGGAGGCCCATGACCTGCCGGAGGCAGAGGTGGTGCTGGATGTCGAGGTGATCGAGATCAGTGA CAAGAACGCCCACAACGTCGGTCTGCTGCTGAGCAACTACGATGTGCAGCTGGGGGCGTTCTCCCCCAGCAACGAACTGC TGGCAACCACGCTCAAGGACACCACCTCCACGACATCCACCACGGTCACCACCGATGCCACCATCAAGAACCTGGTCAAG GCCTTCAGCATCAACAGCTTCGGCGGTTATGTCACCGTGCCCAATGCCCAGTACAACTTCGGCAAGACCCTGGCCAACGG CGAGGTACTCTCCAATCCCAAGATCAGGGTCAAGAACAAGGAAAAGGCCAAGTTCAATGTCGGCACCAGGGTACCGATCA CCACCACCACCATGGCCACCACCGGCACCACCTCGCAGGTCAACGTGCAGTACGTGGATGTGGGGGTCAAGGTCAATGCC GAGCCCACCATCCAGCTCAACAACGAGGTTTCCATCAAGCTGGGACTTGAGGTCAGCTCGATCATCTCCCGCGAGACCGT GGGGGGCAAGGACAGTGCCACCACGGTGGTCACCATTGGCACCCGCAACCTGGATACGGTCCTAAGCCTCAAAGACGGTG AGACCAGTGTCATCGGCGGTCTGATCTCCCACAGCAACAGCGACAGCAAACAGAAGATCTTCCTGCTGGGTGACATCCCG CTGATCGGACCGCTCTTGTCAAACAGCAAGACCGACAACGACAAGACCGAGCTGATCCTGGCCATTACACCCAGGCTCGT CAGGGGCGTGACCGTCCCCCGAGGCAACCTGACATCCTTCTCAAGCAGTAAGGAGGACCGCCCTGCAGTGCAGCCGCTGC CCGCAATTCAACCGTCAGCCCCACCTGCGGTTCCGGCTGCCGCCAGACCGGCAGTTCCGGTTGTTTCCCCGGCAGCCCCT TCAGTACCCCCGCCCGTCAGCAGTGCTCCCGTTGCTCCTGCTGCCATCCCGAATACCCTCACCATCAATGCTCCCAGTTC AACTGTACCCGGTCAGTCATTCAAGGTGCTGGTCAGCGCAGAAGGGGTATCCGATATGAAGGGCGGCAGTTTCTCACTGA ACTACACACCGGCACTACTGGAACTGCTCTCAACCGCACAAGGGACGCTACTCGGCAAGGATAACGGCCCGGACGCCTTT ACCACCACGGACGACCCGGTCAAAGGCAATGTCACCGTCACCCTGCAACAAGCCGATACCGCAACCGGGGCCACCGGCAG CGGTACGCTGGCCGGTTTTATCTTCAGGTCCAAAGGCAAAGGCACCGCCAATCTCACCATCGGCCAGACACGTATCCTGT CAGCCACAGGGCAATTCCTCCCCCTGAAAGCCACCTCCAAGAGCATTACCATCCAGTAA
Upstream 100 bases:
>100_bases GCCTTATATCCGGCCTTCCTCATAACGTTCTTAAAAGCCCTGTTCATCTTTCGCTTGTTACTTGGCAACCGGAAACGCTA TAGATAGCCCCATGCCCAGA
Downstream 100 bases:
>100_bases CACGGCATGCAACGTTGCACATGCAACTTTTTCTTGACAAGTTTGATACGCGTATCTTAGTGTAAAGATAAGATTGTCAG TAAACAGACCACAACTGAAT
Product: type II and III secretion system protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 792; Mature: 792
Protein sequence:
>792_residues MMPTIQHALRLLSGILLAAALCLPGCSAAQKAFSKGEELEQEGNFEAAMYRYAEAFSKNAAESSYRLSFFRAREAAAKQR FKAGTELMSKALYAAAEEQFQTAASLDPTQERFRQLADQAARLNQADKIYREGLDFEKANKPQYARSAFQQAFELRPDAK LYQEALQRVAGSPATSLAGRDLQLTSVKPLTLKANGTRLKELFSTITRHSGINFVFDPDFKDQPATLTLENSGFRQALDL LAALHRIDYAVINESTVLIYPQSAEKTKQYQDMQLRTFHLNHLDAKKAANLIRTMLQVRRLYINEDANALVVRDTSDVTD VIEKILEAHDLPEAEVVLDVEVIEISDKNAHNVGLLLSNYDVQLGAFSPSNELLATTLKDTTSTTSTTVTTDATIKNLVK AFSINSFGGYVTVPNAQYNFGKTLANGEVLSNPKIRVKNKEKAKFNVGTRVPITTTTMATTGTTSQVNVQYVDVGVKVNA EPTIQLNNEVSIKLGLEVSSIISRETVGGKDSATTVVTIGTRNLDTVLSLKDGETSVIGGLISHSNSDSKQKIFLLGDIP LIGPLLSNSKTDNDKTELILAITPRLVRGVTVPRGNLTSFSSSKEDRPAVQPLPAIQPSAPPAVPAAARPAVPVVSPAAP SVPPPVSSAPVAPAAIPNTLTINAPSSTVPGQSFKVLVSAEGVSDMKGGSFSLNYTPALLELLSTAQGTLLGKDNGPDAF TTTDDPVKGNVTVTLQQADTATGATGSGTLAGFIFRSKGKGTANLTIGQTRILSATGQFLPLKATSKSITIQ
Sequences:
>Translated_792_residues MMPTIQHALRLLSGILLAAALCLPGCSAAQKAFSKGEELEQEGNFEAAMYRYAEAFSKNAAESSYRLSFFRAREAAAKQR FKAGTELMSKALYAAAEEQFQTAASLDPTQERFRQLADQAARLNQADKIYREGLDFEKANKPQYARSAFQQAFELRPDAK LYQEALQRVAGSPATSLAGRDLQLTSVKPLTLKANGTRLKELFSTITRHSGINFVFDPDFKDQPATLTLENSGFRQALDL LAALHRIDYAVINESTVLIYPQSAEKTKQYQDMQLRTFHLNHLDAKKAANLIRTMLQVRRLYINEDANALVVRDTSDVTD VIEKILEAHDLPEAEVVLDVEVIEISDKNAHNVGLLLSNYDVQLGAFSPSNELLATTLKDTTSTTSTTVTTDATIKNLVK AFSINSFGGYVTVPNAQYNFGKTLANGEVLSNPKIRVKNKEKAKFNVGTRVPITTTTMATTGTTSQVNVQYVDVGVKVNA EPTIQLNNEVSIKLGLEVSSIISRETVGGKDSATTVVTIGTRNLDTVLSLKDGETSVIGGLISHSNSDSKQKIFLLGDIP LIGPLLSNSKTDNDKTELILAITPRLVRGVTVPRGNLTSFSSSKEDRPAVQPLPAIQPSAPPAVPAAARPAVPVVSPAAP SVPPPVSSAPVAPAAIPNTLTINAPSSTVPGQSFKVLVSAEGVSDMKGGSFSLNYTPALLELLSTAQGTLLGKDNGPDAF TTTDDPVKGNVTVTLQQADTATGATGSGTLAGFIFRSKGKGTANLTIGQTRILSATGQFLPLKATSKSITIQ >Mature_792_residues MMPTIQHALRLLSGILLAAALCLPGCSAAQKAFSKGEELEQEGNFEAAMYRYAEAFSKNAAESSYRLSFFRAREAAAKQR FKAGTELMSKALYAAAEEQFQTAASLDPTQERFRQLADQAARLNQADKIYREGLDFEKANKPQYARSAFQQAFELRPDAK LYQEALQRVAGSPATSLAGRDLQLTSVKPLTLKANGTRLKELFSTITRHSGINFVFDPDFKDQPATLTLENSGFRQALDL LAALHRIDYAVINESTVLIYPQSAEKTKQYQDMQLRTFHLNHLDAKKAANLIRTMLQVRRLYINEDANALVVRDTSDVTD VIEKILEAHDLPEAEVVLDVEVIEISDKNAHNVGLLLSNYDVQLGAFSPSNELLATTLKDTTSTTSTTVTTDATIKNLVK AFSINSFGGYVTVPNAQYNFGKTLANGEVLSNPKIRVKNKEKAKFNVGTRVPITTTTMATTGTTSQVNVQYVDVGVKVNA EPTIQLNNEVSIKLGLEVSSIISRETVGGKDSATTVVTIGTRNLDTVLSLKDGETSVIGGLISHSNSDSKQKIFLLGDIP LIGPLLSNSKTDNDKTELILAITPRLVRGVTVPRGNLTSFSSSKEDRPAVQPLPAIQPSAPPAVPAAARPAVPVVSPAAP SVPPPVSSAPVAPAAIPNTLTINAPSSTVPGQSFKVLVSAEGVSDMKGGSFSLNYTPALLELLSTAQGTLLGKDNGPDAF TTTDDPVKGNVTVTLQQADTATGATGSGTLAGFIFRSKGKGTANLTIGQTRILSATGQFLPLKATSKSITIQ
Specific function: Required for type IV pilus biogenesis and competence. Could function as a pore for exit of the pilus but also as a channel for entry of heme and antimicrobial agents and uptake of transforming DNA [H]
COG id: COG4796
COG function: function code U; Type II secretory pathway, component HofQ
Gene ontology:
Cell location: Cell outer membrane [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the GSP D family [H]
Homologues:
Organism=Escherichia coli, GI1789793, Length=417, Percent_Identity=21.3429256594724, Blast_Score=92, Evalue=1e-19, Organism=Escherichia coli, GI87082242, Length=311, Percent_Identity=26.3665594855305, Blast_Score=85, Evalue=2e-17,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001775 - InterPro: IPR005644 - InterPro: IPR013355 - InterPro: IPR011662 - InterPro: IPR004846 - InterPro: IPR004845 [H]
Pfam domain/function: PF00263 Secretin; PF03958 Secretin_N; PF07660 STN [H]
EC number: NA
Molecular weight: Translated: 84828; Mature: 84828
Theoretical pI: Translated: 8.77; Mature: 8.77
Prosite motif: PS50005 TPR L=RR
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 1.0 %Met (Translated Protein) 1.3 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 1.0 %Met (Mature Protein) 1.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MMPTIQHALRLLSGILLAAALCLPGCSAAQKAFSKGEELEQEGNFEAAMYRYAEAFSKNA CCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCHHHHHCCCHHHHHHHHHHHHHCCC AESSYRLSFFRAREAAAKQRFKAGTELMSKALYAAAEEQFQTAASLDPTQERFRQLADQA CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH ARLNQADKIYREGLDFEKANKPQYARSAFQQAFELRPDAKLYQEALQRVAGSPATSLAGR HHCCHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCHHHCCC DLQLTSVKPLTLKANGTRLKELFSTITRHSGINFVFDPDFKDQPATLTLENSGFRQALDL CEEEEECCEEEEECCCHHHHHHHHHHHHHCCCCEEECCCCCCCCCEEEECCCCHHHHHHH LAALHRIDYAVINESTVLIYPQSAEKTKQYQDMQLRTFHLNHLDAKKAANLIRTMLQVRR HHHHHHCCEEEECCCEEEEECCCHHHHHHHHCCEEEEEECCCCCHHHHHHHHHHHHHHHH LYINEDANALVVRDTSDVTDVIEKILEAHDLPEAEVVLDVEVIEISDKNAHNVGLLLSNY HHCCCCCCEEEEECCCHHHHHHHHHHHHCCCCCCEEEEEEEEEEECCCCCCEEEEEEECC DVQLGAFSPSNELLATTLKDTTSTTSTTVTTDATIKNLVKAFSINSFGGYVTVPNAQYNF EEEEECCCCCCCEEEEEECCCCCCCCEEEECHHHHHHHHHHHCCCCCCCEEEECCCCCCC GKTLANGEVLSNPKIRVKNKEKAKFNVGTRVPITTTTMATTGTTSQVNVQYVDVGVKVNA CCEECCCCEECCCCEEECCCCCCEEECCCCCCEEEEEEEECCCCCEEEEEEEEEEEEECC EPTIQLNNEVSIKLGLEVSSIISRETVGGKDSATTVVTIGTRNLDTVLSLKDGETSVIGG CCEEEECCEEEEEECCCHHHHHHHHCCCCCCCCEEEEEECCCCCCEEEEECCCCHHHHHH LISHSNSDSKQKIFLLGDIPLIGPLLSNSKTDNDKTELILAITPRLVRGVTVPRGNLTSF HHHCCCCCCCEEEEEEECCCHHHHHHCCCCCCCCCEEEEEEECCHHHHCCCCCCCCCCCC SSSKEDRPAVQPLPAIQPSAPPAVPAAARPAVPVVSPAAPSVPPPVSSAPVAPAAIPNTL CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCEE TINAPSSTVPGQSFKVLVSAEGVSDMKGGSFSLNYTPALLELLSTAQGTLLGKDNGPDAF EEECCCCCCCCCCEEEEEEECCCCCCCCCEEEECCCHHHHHHHHHCCCEEEECCCCCCCC TTTDDPVKGNVTVTLQQADTATGATGSGTLAGFIFRSKGKGTANLTIGQTRILSATGQFL CCCCCCCCCCEEEEEEECCCCCCCCCCCCEEEEEEECCCCCEEEEEECCEEEEECCCCEE PLKATSKSITIQ EEEECCCCEEEC >Mature Secondary Structure MMPTIQHALRLLSGILLAAALCLPGCSAAQKAFSKGEELEQEGNFEAAMYRYAEAFSKNA CCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCHHHHHCCCHHHHHHHHHHHHHCCC AESSYRLSFFRAREAAAKQRFKAGTELMSKALYAAAEEQFQTAASLDPTQERFRQLADQA CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH ARLNQADKIYREGLDFEKANKPQYARSAFQQAFELRPDAKLYQEALQRVAGSPATSLAGR HHCCHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCHHHCCC DLQLTSVKPLTLKANGTRLKELFSTITRHSGINFVFDPDFKDQPATLTLENSGFRQALDL CEEEEECCEEEEECCCHHHHHHHHHHHHHCCCCEEECCCCCCCCCEEEECCCCHHHHHHH LAALHRIDYAVINESTVLIYPQSAEKTKQYQDMQLRTFHLNHLDAKKAANLIRTMLQVRR HHHHHHCCEEEECCCEEEEECCCHHHHHHHHCCEEEEEECCCCCHHHHHHHHHHHHHHHH LYINEDANALVVRDTSDVTDVIEKILEAHDLPEAEVVLDVEVIEISDKNAHNVGLLLSNY HHCCCCCCEEEEECCCHHHHHHHHHHHHCCCCCCEEEEEEEEEEECCCCCCEEEEEEECC DVQLGAFSPSNELLATTLKDTTSTTSTTVTTDATIKNLVKAFSINSFGGYVTVPNAQYNF EEEEECCCCCCCEEEEEECCCCCCCCEEEECHHHHHHHHHHHCCCCCCCEEEECCCCCCC GKTLANGEVLSNPKIRVKNKEKAKFNVGTRVPITTTTMATTGTTSQVNVQYVDVGVKVNA CCEECCCCEECCCCEEECCCCCCEEECCCCCCEEEEEEEECCCCCEEEEEEEEEEEEECC EPTIQLNNEVSIKLGLEVSSIISRETVGGKDSATTVVTIGTRNLDTVLSLKDGETSVIGG CCEEEECCEEEEEECCCHHHHHHHHCCCCCCCCEEEEEECCCCCCEEEEECCCCHHHHHH LISHSNSDSKQKIFLLGDIPLIGPLLSNSKTDNDKTELILAITPRLVRGVTVPRGNLTSF HHHCCCCCCCEEEEEEECCCHHHHHHCCCCCCCCCEEEEEEECCHHHHCCCCCCCCCCCC SSSKEDRPAVQPLPAIQPSAPPAVPAAARPAVPVVSPAAPSVPPPVSSAPVAPAAIPNTL CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCEE TINAPSSTVPGQSFKVLVSAEGVSDMKGGSFSLNYTPALLELLSTAQGTLLGKDNGPDAF EEECCCCCCCCCCEEEEEEECCCCCCCCCEEEECCCHHHHHHHHHCCCEEEECCCCCCCC TTTDDPVKGNVTVTLQQADTATGATGSGTLAGFIFRSKGKGTANLTIGQTRILSATGQFL CCCCCCCCCCEEEEEEECCCCCCCCCCCCEEEEEEECCCCCEEEEEECCEEEEECCCCEE PLKATSKSITIQ EEEECCCCEEEC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 10710307 [H]