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The map label for this gene is dcrA [H]

Identifier: 189424087

GI number: 189424087

Start: 1059987

End: 1061543

Strand: Reverse

Name: dcrA [H]

Synonym: Glov_1021

Alternate gene names: 189424087

Gene position: 1061543-1059987 (Counterclockwise)

Preceding gene: 189424088

Following gene: 189424086

Centisome position: 27.1

GC content: 58.0

Gene sequence:

>1557_bases
ATGTCATTCACCGGTCGCATAGTCTTGGGTAACGCCATTGTTGTTGTCATTGCCGTACTTGCTCTCACACTTTTGAACCG
CACCGGTAGTCCGCTCAATGCCGTCATCCTGGGCCTGGTTCTGCTCGGCGGCTCATCGCTGGTCCTTTGGCTGCTCTGCC
GCAAGGCTTTCGAGCCGTTGATGACGGTTACAACAGCCCTGGAGAAGGCGGCAGCCGGCGACCTGTCGGTGCGTGTCGAG
GTGGACGGGGTCGGCGAGATCCATCGTCTGGGAACCGCCTTCAACACCATGATGCATGACATGAACAAGGCCATGCGGCA
GTTTTTCTCGGTGGCCGATCTGGTCAGGGACTCTGTGCAGCTGGTACAGAACACCACCAATGCCATGGTCAATGCAGCTG
AAGAGGTTGCCCTGCAGTCAAGCACCATTGCAACGGCCAGTGAAGAGATGTCGGCCACCTCAGCGGATATTGCCCGCAAC
TGTCTGTACGCCGCCGAGAATTCCCAGAAGGCAACCGAACAGACCACCAGCGGTGCGCAGATTGTTCGCAGCAGCGCCGA
TGTCATGGAAAACATTGCCCAGCGGGTGATGCAGTCATCGGAAACCGTACAGGGTCTGGGACAGCGTTCCGATCAGATCG
GCGCCATTGTCGGAACGATTGAGGATATTGCCGACCAGACCAACCTGCTGGCCCTGAACGCCGCCATTGAGGCGGCCCGG
GCCGGTGAAATGGGACGGGGCTTCGCCGTGGTGGCCGATGAGGTGCGGGCTCTGGCAGAGCGGACCACCCGGGCCACCAA
AGAGATCGCTAGCATGATCAAGACCATTCAGTCCGAAACCCAATCGGCTGTCGGTTCCATGTACGAGGGTGTTGAGCAGG
TAAAACGGGGTACGGAGGGAACCACCCGCTCCGGCGAGGCCCTGGAAGATATCCTGAACATGATCAACGAACTGGCCATG
CAGATCAGCCAGGTGGCAACCGCCGCAGAAGAGCAGACCGCCACCACCAGCGAGATCACCCACAACATCCAGCTGATTAC
CGAGGTGGTCAACCGTAACGTGGAAAATGCCCGCAGCACCACCGACGCAACCACCAAGCTGGTCCAGCAGGTTGATGATC
TGCACCAGCTGGTAGGTCACTTCAAGCTGGCCAATGCCCTGGTCTGGGATGACAGTTTTGCCACCGGTGTCCACCGCTAT
GATGAGCAGCACAAAGTGTTGTTCCGAATGGTCAACGACCTGCATGACGCCATGCAACAGAAGCGGACCAAAGAGGCGAT
TGGTGAAATCCTGCGCGGCCTGGCCGACTACACGGTCAATCACTTTGCCGACGAGGAAAAGGTCTTCGCCCAGACCCGTT
ATCCGGACGAGGCCAACCACAAGCTGCTGCACAAGGCCCTGGTAGATCAGGTCGTCGCATTGATCGGCAAATTCCAGAGC
GGTGAAACCGTACTCTCGCAGGACGTGATCACCTTCCTGCAGAAGTGGCTGATCGACCACATCAAGGGGCAGGACAAGAA
ATACGGTCCACACCTGACCAAGAATGGTATCAAATGA

Upstream 100 bases:

>100_bases
CACTTTTGACCACCATCAACCGACTTTTCAGCAGGATTGCAGACTTTGGCAGATTGGCTGGCTAAACACGTAACTGTTTA
ATTAAAACAGGAGGAGCAGC

Downstream 100 bases:

>100_bases
TCGCAATCATTGACTACGGCATGGGCAACCTGCGCTCGGTTCAAAAAGGCTTTGAGCGGATAGGTTTTGCGGCGGAAGTA
ACCGCTGATCCGGCACGCAT

Product: methyl-accepting chemotaxis sensory transducer

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 518; Mature: 517

Protein sequence:

>518_residues
MSFTGRIVLGNAIVVVIAVLALTLLNRTGSPLNAVILGLVLLGGSSLVLWLLCRKAFEPLMTVTTALEKAAAGDLSVRVE
VDGVGEIHRLGTAFNTMMHDMNKAMRQFFSVADLVRDSVQLVQNTTNAMVNAAEEVALQSSTIATASEEMSATSADIARN
CLYAAENSQKATEQTTSGAQIVRSSADVMENIAQRVMQSSETVQGLGQRSDQIGAIVGTIEDIADQTNLLALNAAIEAAR
AGEMGRGFAVVADEVRALAERTTRATKEIASMIKTIQSETQSAVGSMYEGVEQVKRGTEGTTRSGEALEDILNMINELAM
QISQVATAAEEQTATTSEITHNIQLITEVVNRNVENARSTTDATTKLVQQVDDLHQLVGHFKLANALVWDDSFATGVHRY
DEQHKVLFRMVNDLHDAMQQKRTKEAIGEILRGLADYTVNHFADEEKVFAQTRYPDEANHKLLHKALVDQVVALIGKFQS
GETVLSQDVITFLQKWLIDHIKGQDKKYGPHLTKNGIK

Sequences:

>Translated_518_residues
MSFTGRIVLGNAIVVVIAVLALTLLNRTGSPLNAVILGLVLLGGSSLVLWLLCRKAFEPLMTVTTALEKAAAGDLSVRVE
VDGVGEIHRLGTAFNTMMHDMNKAMRQFFSVADLVRDSVQLVQNTTNAMVNAAEEVALQSSTIATASEEMSATSADIARN
CLYAAENSQKATEQTTSGAQIVRSSADVMENIAQRVMQSSETVQGLGQRSDQIGAIVGTIEDIADQTNLLALNAAIEAAR
AGEMGRGFAVVADEVRALAERTTRATKEIASMIKTIQSETQSAVGSMYEGVEQVKRGTEGTTRSGEALEDILNMINELAM
QISQVATAAEEQTATTSEITHNIQLITEVVNRNVENARSTTDATTKLVQQVDDLHQLVGHFKLANALVWDDSFATGVHRY
DEQHKVLFRMVNDLHDAMQQKRTKEAIGEILRGLADYTVNHFADEEKVFAQTRYPDEANHKLLHKALVDQVVALIGKFQS
GETVLSQDVITFLQKWLIDHIKGQDKKYGPHLTKNGIK
>Mature_517_residues
SFTGRIVLGNAIVVVIAVLALTLLNRTGSPLNAVILGLVLLGGSSLVLWLLCRKAFEPLMTVTTALEKAAAGDLSVRVEV
DGVGEIHRLGTAFNTMMHDMNKAMRQFFSVADLVRDSVQLVQNTTNAMVNAAEEVALQSSTIATASEEMSATSADIARNC
LYAAENSQKATEQTTSGAQIVRSSADVMENIAQRVMQSSETVQGLGQRSDQIGAIVGTIEDIADQTNLLALNAAIEAARA
GEMGRGFAVVADEVRALAERTTRATKEIASMIKTIQSETQSAVGSMYEGVEQVKRGTEGTTRSGEALEDILNMINELAMQ
ISQVATAAEEQTATTSEITHNIQLITEVVNRNVENARSTTDATTKLVQQVDDLHQLVGHFKLANALVWDDSFATGVHRYD
EQHKVLFRMVNDLHDAMQQKRTKEAIGEILRGLADYTVNHFADEEKVFAQTRYPDEANHKLLHKALVDQVVALIGKFQSG
ETVLSQDVITFLQKWLIDHIKGQDKKYGPHLTKNGIK

Specific function: Mediates Taxis To The Sugars Ribose And Galactose VIa An Interaction With The Periplasmic Ribose- Or Galactose-Binding Proteins. Chemotactic-Signal Transducers Respond To Changes In The Concentration Of Attractants And Repellents In The Environment, Trans

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Single-pass membrane protein; Periplasmic side (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PAS (PER-ARNT-SIM) domain [H]

Homologues:

Organism=Escherichia coli, GI1787690, Length=353, Percent_Identity=28.328611898017, Blast_Score=121, Evalue=8e-29,
Organism=Escherichia coli, GI1788194, Length=344, Percent_Identity=29.0697674418605, Blast_Score=120, Evalue=2e-28,
Organism=Escherichia coli, GI2367378, Length=295, Percent_Identity=30.1694915254237, Blast_Score=116, Evalue=3e-27,
Organism=Escherichia coli, GI1788195, Length=336, Percent_Identity=27.3809523809524, Blast_Score=108, Evalue=8e-25,
Organism=Escherichia coli, GI1789453, Length=155, Percent_Identity=34.8387096774194, Blast_Score=91, Evalue=2e-19,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004090
- InterPro:   IPR004089
- InterPro:   IPR003660
- InterPro:   IPR001610
- InterPro:   IPR000014
- InterPro:   IPR000700
- InterPro:   IPR013767 [H]

Pfam domain/function: PF00672 HAMP; PF00015 MCPsignal; PF00989 PAS [H]

EC number: NA

Molecular weight: Translated: 56333; Mature: 56202

Theoretical pI: Translated: 5.14; Mature: 5.14

Prosite motif: PS50885 HAMP ; PS00550 HEMERYTHRINS ; PS50111 CHEMOTAXIS_TRANSDUC_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSFTGRIVLGNAIVVVIAVLALTLLNRTGSPLNAVILGLVLLGGSSLVLWLLCRKAFEPL
CCCCCCEEHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH
MTVTTALEKAAAGDLSVRVEVDGVGEIHRLGTAFNTMMHDMNKAMRQFFSVADLVRDSVQ
HHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LVQNTTNAMVNAAEEVALQSSTIATASEEMSATSADIARNCLYAAENSQKATEQTTSGAQ
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
IVRSSADVMENIAQRVMQSSETVQGLGQRSDQIGAIVGTIEDIADQTNLLALNAAIEAAR
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
AGEMGRGFAVVADEVRALAERTTRATKEIASMIKTIQSETQSAVGSMYEGVEQVKRGTEG
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
TTRSGEALEDILNMINELAMQISQVATAAEEQTATTSEITHNIQLITEVVNRNVENARST
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHH
TDATTKLVQQVDDLHQLVGHFKLANALVWDDSFATGVHRYDEQHKVLFRMVNDLHDAMQQ
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
KRTKEAIGEILRGLADYTVNHFADEEKVFAQTRYPDEANHKLLHKALVDQVVALIGKFQS
HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCC
GETVLSQDVITFLQKWLIDHIKGQDKKYGPHLTKNGIK
CCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC
>Mature Secondary Structure 
SFTGRIVLGNAIVVVIAVLALTLLNRTGSPLNAVILGLVLLGGSSLVLWLLCRKAFEPL
CCCCCEEHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH
MTVTTALEKAAAGDLSVRVEVDGVGEIHRLGTAFNTMMHDMNKAMRQFFSVADLVRDSVQ
HHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LVQNTTNAMVNAAEEVALQSSTIATASEEMSATSADIARNCLYAAENSQKATEQTTSGAQ
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
IVRSSADVMENIAQRVMQSSETVQGLGQRSDQIGAIVGTIEDIADQTNLLALNAAIEAAR
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
AGEMGRGFAVVADEVRALAERTTRATKEIASMIKTIQSETQSAVGSMYEGVEQVKRGTEG
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
TTRSGEALEDILNMINELAMQISQVATAAEEQTATTSEITHNIQLITEVVNRNVENARST
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHH
TDATTKLVQQVDDLHQLVGHFKLANALVWDDSFATGVHRYDEQHKVLFRMVNDLHDAMQQ
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
KRTKEAIGEILRGLADYTVNHFADEEKVFAQTRYPDEANHKLLHKALVDQVVALIGKFQS
HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCC
GETVLSQDVITFLQKWLIDHIKGQDKKYGPHLTKNGIK
CCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 1548224 [H]