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The map label for this gene is nrfC [H]

Identifier: 189424000

GI number: 189424000

Start: 965599

End: 966165

Strand: Reverse

Name: nrfC [H]

Synonym: Glov_0934

Alternate gene names: 189424000

Gene position: 966165-965599 (Counterclockwise)

Preceding gene: 189424001

Following gene: 189423999

Centisome position: 24.66

GC content: 55.91

Gene sequence:

>567_bases
ATGGCTCGTTACGCGATGGTTATAGATACACGAAAATGCATCGGCTGCCATTCCTGTACGGTCGCCTGCAAGGTGCACAA
CGAACTGCCGGTTGAGATGATCTACAACCCGGTGACCACGGTCGGTCCTACCGGCGTCTACCCGGACGTACAGATGGTCC
ATATCCCGCTGCTGTGTATGCATTGCGACAATCCGCCCTGCGTGGACGGCTGCCCCACCTGTGCCTCCCAACGCCGGGAA
AAGGACGGGATTGTCTTTGTGGAAGACAGCAAATGTGTCGGCTGCCTGGCCTGTGTCATGGCCTGTCCCTACGGCGCCCG
TTACAAGAACCATGCAACCGGCGCGGTCCAGAAATGCGACTTCTGTAAAGACCGGGTTGATATCGGCCTCAAGCCGCACT
GTGTCAACACCTGTCACCAGAAGGCCCGTATCTTCGGGGACCTTGATGACGAAACCAGTGATGTCCACAAACTTGTAAAC
GGGGAAAATGCCTGCCGCCTGCTGGGTGAGCTGGGGACAGACCCGTATGTCTTCTATATCTATGGATTGGAGGTAAAGAA
TCCATGA

Upstream 100 bases:

>100_bases
GCCGATGATCACTGCGACCCCTATAGCGGTTCCTGGGCTAACCGTGGTCTGCTCTGCCGCGTTTATAAAGTAAATGCTTC
AGATATGGAGGGCAAATAAG

Downstream 100 bases:

>100_bases
GTACCAAACATGAAGGTTGGGGCTGGATGTTGGCCGTTGATTTCTTTTTTGCCGGCATGGGTGGCGGCATGGTGCTGATT
ACCGGTTTGCTGGAACTGTT

Product: 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein

Products: oxidized cytochrome C552; NH3 [C]

Alternate protein names: NA

Number of amino acids: Translated: 188; Mature: 187

Protein sequence:

>188_residues
MARYAMVIDTRKCIGCHSCTVACKVHNELPVEMIYNPVTTVGPTGVYPDVQMVHIPLLCMHCDNPPCVDGCPTCASQRRE
KDGIVFVEDSKCVGCLACVMACPYGARYKNHATGAVQKCDFCKDRVDIGLKPHCVNTCHQKARIFGDLDDETSDVHKLVN
GENACRLLGELGTDPYVFYIYGLEVKNP

Sequences:

>Translated_188_residues
MARYAMVIDTRKCIGCHSCTVACKVHNELPVEMIYNPVTTVGPTGVYPDVQMVHIPLLCMHCDNPPCVDGCPTCASQRRE
KDGIVFVEDSKCVGCLACVMACPYGARYKNHATGAVQKCDFCKDRVDIGLKPHCVNTCHQKARIFGDLDDETSDVHKLVN
GENACRLLGELGTDPYVFYIYGLEVKNP
>Mature_187_residues
ARYAMVIDTRKCIGCHSCTVACKVHNELPVEMIYNPVTTVGPTGVYPDVQMVHIPLLCMHCDNPPCVDGCPTCASQRREK
DGIVFVEDSKCVGCLACVMACPYGARYKNHATGAVQKCDFCKDRVDIGLKPHCVNTCHQKARIFGDLDDETSDVHKLVNG
ENACRLLGELGTDPYVFYIYGLEVKNP

Specific function: Probably involved in the transfer of electrons from the quinone pool to the type-c cytochromes [H]

COG id: COG0437

COG function: function code C; Fe-S-cluster-containing hydrogenase components 1

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 3 4Fe-4S ferredoxin-type domains [H]

Homologues:

Organism=Escherichia coli, GI2367345, Length=179, Percent_Identity=40.7821229050279, Blast_Score=132, Evalue=2e-32,
Organism=Escherichia coli, GI226510944, Length=181, Percent_Identity=37.0165745856354, Blast_Score=113, Evalue=9e-27,
Organism=Escherichia coli, GI1787122, Length=155, Percent_Identity=38.0645161290323, Blast_Score=107, Evalue=4e-25,
Organism=Escherichia coli, GI1787872, Length=155, Percent_Identity=36.7741935483871, Blast_Score=102, Evalue=1e-23,
Organism=Escherichia coli, GI1787478, Length=117, Percent_Identity=36.7521367521368, Blast_Score=90, Evalue=9e-20,
Organism=Escherichia coli, GI1787740, Length=123, Percent_Identity=35.7723577235772, Blast_Score=89, Evalue=1e-19,
Organism=Escherichia coli, GI1787749, Length=160, Percent_Identity=32.5, Blast_Score=85, Evalue=2e-18,
Organism=Escherichia coli, GI1790326, Length=178, Percent_Identity=29.7752808988764, Blast_Score=79, Evalue=2e-16,
Organism=Escherichia coli, GI1789370, Length=178, Percent_Identity=31.4606741573034, Blast_Score=78, Evalue=4e-16,
Organism=Escherichia coli, GI2367245, Length=161, Percent_Identity=34.1614906832298, Blast_Score=73, Evalue=1e-14,
Organism=Escherichia coli, GI87082179, Length=167, Percent_Identity=29.3413173652695, Blast_Score=70, Evalue=6e-14,
Organism=Escherichia coli, GI1789067, Length=165, Percent_Identity=33.3333333333333, Blast_Score=67, Evalue=7e-13,
Organism=Escherichia coli, GI87082180, Length=124, Percent_Identity=33.8709677419355, Blast_Score=65, Evalue=4e-12,
Organism=Escherichia coli, GI1788811, Length=151, Percent_Identity=32.4503311258278, Blast_Score=64, Evalue=8e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017896
- InterPro:   IPR017900
- InterPro:   IPR017567
- InterPro:   IPR006311 [H]

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 20719; Mature: 20588

Theoretical pI: Translated: 6.67; Mature: 6.67

Prosite motif: PS00198 4FE4S_FERREDOXIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

9.6 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
12.8 %Cys+Met (Translated Protein)
9.6 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
12.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MARYAMVIDTRKCIGCHSCTVACKVHNELPVEMIYNPVTTVGPTGVYPDVQMVHIPLLCM
CCCEEEEEECHHHCCCCCEEEEEEECCCCCHHHEECCCCCCCCCCCCCCCEEEEEEEEEE
HCDNPPCVDGCPTCASQRREKDGIVFVEDSKCVGCLACVMACPYGARYKNHATGAVQKCD
ECCCCCCCCCCCCHHHHHCCCCCEEEEECCCHHHHHHHHHHCCCCCCCCCCCCCHHHHHH
FCKDRVDIGLKPHCVNTCHQKARIFGDLDDETSDVHKLVNGENACRLLGELGTDPYVFYI
HHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHCCCCCEEEEE
YGLEVKNP
EEEEECCC
>Mature Secondary Structure 
ARYAMVIDTRKCIGCHSCTVACKVHNELPVEMIYNPVTTVGPTGVYPDVQMVHIPLLCM
CCEEEEEECHHHCCCCCEEEEEEECCCCCHHHEECCCCCCCCCCCCCCCEEEEEEEEEE
HCDNPPCVDGCPTCASQRREKDGIVFVEDSKCVGCLACVMACPYGARYKNHATGAVQKCD
ECCCCCCCCCCCCHHHHHCCCCCEEEEECCCHHHHHHHHHHCCCCCCCCCCCCCHHHHHH
FCKDRVDIGLKPHCVNTCHQKARIFGDLDDETSDVHKLVNGENACRLLGELGTDPYVFYI
HHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHCCCCCEEEEE
YGLEVKNP
EEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: Fe [C]

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: reduced cytochrome C552; nitrite [C]

Specific reaction: reduced cytochrome C552 + nitrite = oxidized cytochrome C552 + NH3 [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]