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The map label for this gene is ydhC [H]

Identifier: 189423941

GI number: 189423941

Start: 899390

End: 900070

Strand: Reverse

Name: ydhC [H]

Synonym: Glov_0874

Alternate gene names: 189423941

Gene position: 900070-899390 (Counterclockwise)

Preceding gene: 189423946

Following gene: 189423940

Centisome position: 22.97

GC content: 54.63

Gene sequence:

>681_bases
ATGAAAAGATTAAAAGAAAAACACCTGACGTTACGGGAAAAAATACTGGAGACGATCCGTGATGCCATCATCTCCGGCAG
CATCACCTCCGGTAGCCGCGTTTCAGAACCGGACCTTGCCGAGCGGTTCGGCATCAGCCGCACCCCGATCCGTGAAGCGT
TCCGTCAGCTTGAGTCGGAAGGTTACCTGACGGTGATACCGCGCAAAGGGGCGGTGGTCAGCGCCTTTACCCAGAAGGAT
GTGGAGGAATTTTACGCCATCAAAAGCATCCTGGAGGGGTATGCCGCACGGCTGGCCTGCACCAAGCTGACCAGCAAGGA
AATCGAGCGGCTCCAGACCATCAACGAGCGTTTGTCAGAACTGTGCAAGCATTCTGACATCAAACAGTTTTTCAAGGTCC
ATAACGACTTTCATGATCTTTTCATCAAGGCGGCCGACAATGACAAACTGCGGGAGATGATTAACCTGCTGGTAACCCGT
TTCCAGCGGCTGCGGCTGATGTCACTCTCGCAACCGGGCCGGATGGAGGTTTCAGTGCAGGAACATCAAAAGATCATTGC
CGCCTTCCTTGAACGTGACTGTGAGACCGCTGAGCTGCTGGTGCGCAAAAACGCCGAATACGGCGGCAAGGTATTGCTGG
ATGAAACCGCCTGCCAGCCGGGCGAGGCGATGGATCTCTAG

Upstream 100 bases:

>100_bases
CCCCGTCCCCGGAACTCATTAAAGTAAAATGGATTCAATTGACAAATAGTGCATACTGTATACAATAATCCCATCATCTT
ATGGAGCAGGCTCGGACATC

Downstream 100 bases:

>100_bases
GGGGCTGCCATGAGCGGAGCATCACAGGATACCAGACGCAAGCTCCCCAAAATGGACAAGGTACTGTCCTGGCCCGAGAT
CGCTTCTCTGCGGTCACTTA

Product: GntR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 226; Mature: 226

Protein sequence:

>226_residues
MKRLKEKHLTLREKILETIRDAIISGSITSGSRVSEPDLAERFGISRTPIREAFRQLESEGYLTVIPRKGAVVSAFTQKD
VEEFYAIKSILEGYAARLACTKLTSKEIERLQTINERLSELCKHSDIKQFFKVHNDFHDLFIKAADNDKLREMINLLVTR
FQRLRLMSLSQPGRMEVSVQEHQKIIAAFLERDCETAELLVRKNAEYGGKVLLDETACQPGEAMDL

Sequences:

>Translated_226_residues
MKRLKEKHLTLREKILETIRDAIISGSITSGSRVSEPDLAERFGISRTPIREAFRQLESEGYLTVIPRKGAVVSAFTQKD
VEEFYAIKSILEGYAARLACTKLTSKEIERLQTINERLSELCKHSDIKQFFKVHNDFHDLFIKAADNDKLREMINLLVTR
FQRLRLMSLSQPGRMEVSVQEHQKIIAAFLERDCETAELLVRKNAEYGGKVLLDETACQPGEAMDL
>Mature_226_residues
MKRLKEKHLTLREKILETIRDAIISGSITSGSRVSEPDLAERFGISRTPIREAFRQLESEGYLTVIPRKGAVVSAFTQKD
VEEFYAIKSILEGYAARLACTKLTSKEIERLQTINERLSELCKHSDIKQFFKVHNDFHDLFIKAADNDKLREMINLLVTR
FQRLRLMSLSQPGRMEVSVQEHQKIIAAFLERDCETAELLVRKNAEYGGKVLLDETACQPGEAMDL

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1787821, Length=188, Percent_Identity=26.063829787234, Blast_Score=80, Evalue=9e-17,
Organism=Escherichia coli, GI87081914, Length=193, Percent_Identity=26.9430051813472, Blast_Score=72, Evalue=2e-14,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011711
- InterPro:   IPR000485
- InterPro:   IPR000524
- InterPro:   IPR011991 [H]

Pfam domain/function: PF07729 FCD; PF00392 GntR [H]

EC number: NA

Molecular weight: Translated: 25872; Mature: 25872

Theoretical pI: Translated: 7.98; Mature: 7.98

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKRLKEKHLTLREKILETIRDAIISGSITSGSRVSEPDLAERFGISRTPIREAFRQLESE
CCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHCCCCCHHHHHHHHHHCC
GYLTVIPRKGAVVSAFTQKDVEEFYAIKSILEGYAARLACTKLTSKEIERLQTINERLSE
CCEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LCKHSDIKQFFKVHNDFHDLFIKAADNDKLREMINLLVTRFQRLRLMSLSQPGRMEVSVQ
HHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEHHH
EHQKIIAAFLERDCETAELLVRKNAEYGGKVLLDETACQPGEAMDL
HHHHHHHHHHHCCCHHHHHHHHCCCCCCCEEEEECCCCCCCCCCCC
>Mature Secondary Structure
MKRLKEKHLTLREKILETIRDAIISGSITSGSRVSEPDLAERFGISRTPIREAFRQLESE
CCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHCCCCCHHHHHHHHHHCC
GYLTVIPRKGAVVSAFTQKDVEEFYAIKSILEGYAARLACTKLTSKEIERLQTINERLSE
CCEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LCKHSDIKQFFKVHNDFHDLFIKAADNDKLREMINLLVTRFQRLRLMSLSQPGRMEVSVQ
HHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEHHH
EHQKIIAAFLERDCETAELLVRKNAEYGGKVLLDETACQPGEAMDL
HHHHHHHHHHHCCCHHHHHHHHCCCCCCCEEEEECCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9202461; 9384377 [H]