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The map label for this gene is ybbD [H]

Identifier: 189423786

GI number: 189423786

Start: 734760

End: 735947

Strand: Reverse

Name: ybbD [H]

Synonym: Glov_0717

Alternate gene names: 189423786

Gene position: 735947-734760 (Counterclockwise)

Preceding gene: 189423787

Following gene: 189423785

Centisome position: 18.78

GC content: 60.69

Gene sequence:

>1188_bases
ATGTTTTCCTGCACACGCCGTACCTTTCTTCAAAACAGCGCCCTGACCGGCGCTTCATTGCTGCTGCCCGGCCTGCTGGG
CGGCTGTGCCGTCACCCGCAGCACAGCCGTCAAGACATTGCCGCCGGACCTGCAGAGCTGGCCGCTGGAGCGCAAGATCG
CCCAGATGCTGTTGTTGGGCTTTCCCGGCGAGACCCTGGAACCGGACAGCCCGATTGATCAGGCCATCCGCCGCTACGGC
GCAGGTGGGGTGGTGCTGTTTGACAACAACATCGACCTTGGGGTAACCGGCCGCAATATCACAGCCCCGGCCCAGCTGAA
GCAGCTGACCACCGCCCTGCAGCAGGCCTCTGAACTGCCGCTCTTGATTGCGGTGGATCAGGAAGGAGGGGTGGTCGCCC
GTTTGAAAGACCGCTACGGTTTTCCTGCCACGGTCTCGGCCAAATATCTGGGACAACAGAACCGGCTGGACCTGACCCGT
TCATCCAGCGAAAACCTCGCGGCAACGCTGGATGAATACGGCTTCAACCTGAACCTGGCGCCGGTGGTTGACCTGGCAAC
GAACCCGGATAACCCGGTAATCGCCTTTAAAGAGCGCAGTTTCTCGGCTGACCCGGCGTTGGTAGCGGCCCATGCCGCCG
AGTTCATCAAGAGCCACCACCGCCACCATATCCTGACCTGCCTGAAGCACTTCCCCGGCCATGGCAGCTCCCGGGATGAC
TCGCACCTGGGACTGGTGGATGTGACCCGCTACTGGCATGAAAACGAGCTGCAGCCCTACCGCGATCTGATCAGTCAGGG
GCTGTGTGATATGGTCATGACCGCCCACACCTTCAATACCGCCATCGACCCGGACCATCCCGCCACGCTTTCCAGGGCCA
CCATTGACGGCATCCTGCGCAAACAGCTCGGTTTTGATGGCGTGGTGGTCAGCGACGACCTCTACATGGGGGCGATTATC
CAGCATTACAGCTACGAAACCGCTGTGGAGAAGGCGATCAATGCCGGGGTTGACCTGCTGGTGGTGGCGAATGACAAGCT
CTACAGCCCCGATATCATGCCCCGCACCATTGAGCTGCTGCTGAATCTGGTACAGCAGGGCAGAATCCCCCGGGAGCGGA
TCGAACAGGCCAGTCGCAGGATCATCGCCATGAAACAGCGGCTCCTGAAACCCGGGAATACTGCATAA

Upstream 100 bases:

>100_bases
GTGTTAGACATCATAGCTACCAGTGCAGCGGTCTGGCCCGATGTACAGATCCGGACAGAACAACGGTAGCAATCCCGATT
CCACAAACAAACGAGGCACC

Downstream 100 bases:

>100_bases
CAAGCTGCAATTAGTCTAATTCCCCTGCAGCGCAATCAAGTTGCGCCGCAGTCAATTGCAAGGAGTGCTACGATGAAAAT
CCGTCCGTTTTTGCTGCTGC

Product: glycoside hydrolase

Products: N-acetylglucosamin; anhydro-N-acetylmuramic acid [C]

Alternate protein names: ORF1 [H]

Number of amino acids: Translated: 395; Mature: 395

Protein sequence:

>395_residues
MFSCTRRTFLQNSALTGASLLLPGLLGGCAVTRSTAVKTLPPDLQSWPLERKIAQMLLLGFPGETLEPDSPIDQAIRRYG
AGGVVLFDNNIDLGVTGRNITAPAQLKQLTTALQQASELPLLIAVDQEGGVVARLKDRYGFPATVSAKYLGQQNRLDLTR
SSSENLAATLDEYGFNLNLAPVVDLATNPDNPVIAFKERSFSADPALVAAHAAEFIKSHHRHHILTCLKHFPGHGSSRDD
SHLGLVDVTRYWHENELQPYRDLISQGLCDMVMTAHTFNTAIDPDHPATLSRATIDGILRKQLGFDGVVVSDDLYMGAII
QHYSYETAVEKAINAGVDLLVVANDKLYSPDIMPRTIELLLNLVQQGRIPRERIEQASRRIIAMKQRLLKPGNTA

Sequences:

>Translated_395_residues
MFSCTRRTFLQNSALTGASLLLPGLLGGCAVTRSTAVKTLPPDLQSWPLERKIAQMLLLGFPGETLEPDSPIDQAIRRYG
AGGVVLFDNNIDLGVTGRNITAPAQLKQLTTALQQASELPLLIAVDQEGGVVARLKDRYGFPATVSAKYLGQQNRLDLTR
SSSENLAATLDEYGFNLNLAPVVDLATNPDNPVIAFKERSFSADPALVAAHAAEFIKSHHRHHILTCLKHFPGHGSSRDD
SHLGLVDVTRYWHENELQPYRDLISQGLCDMVMTAHTFNTAIDPDHPATLSRATIDGILRKQLGFDGVVVSDDLYMGAII
QHYSYETAVEKAINAGVDLLVVANDKLYSPDIMPRTIELLLNLVQQGRIPRERIEQASRRIIAMKQRLLKPGNTA
>Mature_395_residues
MFSCTRRTFLQNSALTGASLLLPGLLGGCAVTRSTAVKTLPPDLQSWPLERKIAQMLLLGFPGETLEPDSPIDQAIRRYG
AGGVVLFDNNIDLGVTGRNITAPAQLKQLTTALQQASELPLLIAVDQEGGVVARLKDRYGFPATVSAKYLGQQNRLDLTR
SSSENLAATLDEYGFNLNLAPVVDLATNPDNPVIAFKERSFSADPALVAAHAAEFIKSHHRHHILTCLKHFPGHGSSRDD
SHLGLVDVTRYWHENELQPYRDLISQGLCDMVMTAHTFNTAIDPDHPATLSRATIDGILRKQLGFDGVVVSDDLYMGAII
QHYSYETAVEKAINAGVDLLVVANDKLYSPDIMPRTIELLLNLVQQGRIPRERIEQASRRIIAMKQRLLKPGNTA

Specific function: Hydrolyses the beta-1,4-glycosidic bond between N-acetylglucosamine and anhydro-N-acetylmuramic acid in cell wall degradation products following their importation into the cell during the process for recycling cell wall muropeptides [C]

COG id: COG1472

COG function: function code G; Beta-glucosidase-related glycosidases

Gene ontology:

Cell location: Cell membrane; Lipid-anchor (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the glycosyl hydrolase 3 family [H]

Homologues:

Organism=Escherichia coli, GI1787350, Length=307, Percent_Identity=31.2703583061889, Blast_Score=135, Evalue=7e-33,
Organism=Escherichia coli, GI1788453, Length=355, Percent_Identity=23.0985915492958, Blast_Score=73, Evalue=3e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR019800
- InterPro:   IPR002772
- InterPro:   IPR001764
- InterPro:   IPR017853 [H]

Pfam domain/function: PF00933 Glyco_hydro_3; PF01915 Glyco_hydro_3_C [H]

EC number: NA

Molecular weight: Translated: 43316; Mature: 43316

Theoretical pI: Translated: 6.80; Mature: 6.80

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFSCTRRTFLQNSALTGASLLLPGLLGGCAVTRSTAVKTLPPDLQSWPLERKIAQMLLLG
CCCCHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCHHHCCHHHHHHHHHHHC
FPGETLEPDSPIDQAIRRYGAGGVVLFDNNIDLGVTGRNITAPAQLKQLTTALQQASELP
CCCCCCCCCCCHHHHHHHHCCCCEEEECCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCC
LLIAVDQEGGVVARLKDRYGFPATVSAKYLGQQNRLDLTRSSSENLAATLDEYGFNLNLA
EEEEECCCCCEEEEEHHCCCCCCEEHHHHCCCCCCCEECCCCCCHHHHHHHHCCCCCCCC
PVVDLATNPDNPVIAFKERSFSADPALVAAHAAEFIKSHHRHHILTCLKHFPGHGSSRDD
EEEEECCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCHHHHHHHHHHCCCCCCCCCC
SHLGLVDVTRYWHENELQPYRDLISQGLCDMVMTAHTFNTAIDPDHPATLSRATIDGILR
CCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHH
KQLGFDGVVVSDDLYMGAIIQHYSYETAVEKAINAGVDLLVVANDKLYSPDIMPRTIELL
HHCCCCCEEEECCHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCHHHHHHH
LNLVQQGRIPRERIEQASRRIIAMKQRLLKPGNTA
HHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure
MFSCTRRTFLQNSALTGASLLLPGLLGGCAVTRSTAVKTLPPDLQSWPLERKIAQMLLLG
CCCCHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCHHHCCHHHHHHHHHHHC
FPGETLEPDSPIDQAIRRYGAGGVVLFDNNIDLGVTGRNITAPAQLKQLTTALQQASELP
CCCCCCCCCCCHHHHHHHHCCCCEEEECCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCC
LLIAVDQEGGVVARLKDRYGFPATVSAKYLGQQNRLDLTRSSSENLAATLDEYGFNLNLA
EEEEECCCCCEEEEEHHCCCCCCEEHHHHCCCCCCCEECCCCCCHHHHHHHHCCCCCCCC
PVVDLATNPDNPVIAFKERSFSADPALVAAHAAEFIKSHHRHHILTCLKHFPGHGSSRDD
EEEEECCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCHHHHHHHHHHCCCCCCCCCC
SHLGLVDVTRYWHENELQPYRDLISQGLCDMVMTAHTFNTAIDPDHPATLSRATIDGILR
CCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHH
KQLGFDGVVVSDDLYMGAIIQHYSYETAVEKAINAGVDLLVVANDKLYSPDIMPRTIELL
HHCCCCCEEEECCHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCHHHHHHH
LNLVQQGRIPRERIEQASRRIIAMKQRLLKPGNTA
HHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: Cell Wall [C]

Specific reaction: Cell Wall = N-acetylglucosamin + anhydro-N-acetylmuramic acid [C]

General reaction: Hydrolyse [C]

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8011666; 9274029; 9384377 [H]