| Definition | Geobacter lovleyi SZ chromosome, complete genome. |
|---|---|
| Accession | NC_010814 |
| Length | 3,917,761 |
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The map label for this gene is livJ [C]
Identifier: 189423785
GI number: 189423785
Start: 732213
End: 734687
Strand: Reverse
Name: livJ [C]
Synonym: Glov_0716
Alternate gene names: 189423785
Gene position: 734687-732213 (Counterclockwise)
Preceding gene: 189423786
Following gene: 189423784
Centisome position: 18.75
GC content: 60.04
Gene sequence:
>2475_bases ATGAAAATCCGTCCGTTTTTGCTGCTGCAGATATTGTTACTCTGCACCCTGCTGGTACAGGGGGGCTGTTCATCATCTTC TTCATCCTCCAGCAGCACGCCCCAGACCATATCGATCGGTGTCCTGGCGCCGCTCACCGGCAGCCTGAAACATATCGGGG AAGGGATGCAGGCGGCACTTACGGTCGGCCTGCCCCAGGTAAACCGGCGGCTTACTCTGGAAGGGCAGAATTTCAGGCTC ACAACCGTGGTGAAAGATACGGCCTCCGATCCGCAAGGGGCTTTGCTGGCCCTGTTGGCGCTCAAGGCCCAGGGGATCAG GTTTGTCATCGGTCCCGTCAGCAGTGCCGAGTGTGCGGCGATCCTGCCGATGGCAAACTCGCTGGGCATGATCCTGATAA GTCCGGCCAGTACCGCAACCTCGCTGGCCATCGCCGGTGATAACCTGTTCCGGCTGATGCCCAACGACAACAGCCAGGGG GCCGGTACAGCCGCCTTGATGTTGAAAAAGGGATTCACGGCAATGGTTCCGGTCTGGCGCGGCGATGTCTGGGGTGATGA CCTCAAGACAAGCATCACCACCGCCTTCCAGACCGGCGGTGGCACGGTATTGAGCGGTGTCCGTTATGCTCCCGGCGCCG GCGCGTATGACTCGGAGCTTGATCAGGCAGCCGCCCAGGTTTCACAGGCATTAACCACCCATGGAGCCGGCAAGGTGGCG GTGGTGATGATTTCCTATCCGACCGACTCGGTTGCCCTGCTGAACGCTGCAGCAAGCAGGCCGTCGCTGGCACAAGCCGC TTGGTTCGGCAGCGATGCCTCAACCCTCTCCCCCCTGATTACCGCTTCAGCCACCGCCTCCGCCTTTGCGGCGCAGACCA ACCTGCTGTCTCCGATCTTCAGCAGGGAAGATGTGGTGCTGCCTTTGCCGGGCACCGTACTGATCGACCGCGCACTGCGC GAAAAGCTTTCGCAACAGCTCGGCCGTCAGGCCGACAGCACCACCTTCGCCACCTGGGATGCGTTGTGGCTGACCGCCAA GACCTACACCGCCAGCGGTATCAATGCCGATACCGAAACACTGAAAACAGGGCTGGTCGCTACTGCAAAGAGCAACGTCG GGCTGAACGGCGCATTGGTAATGAATGCGGCAGGCGACATGAACAAAGGTAACTATGCCTTCTACAGCATCGCGGCAAAC GGCAGCAGCTATGCCTGGCAACTCAAGGCCGCCTATCAGTACGAACAGCAGGCAACCCCGAAGATTATCGATGTCTCAGA GCCGGTTCTGAAGGGGCTCACCCCTCCCGCGGCAGAGGTCAGGATCGGCGCCCTGCTGAGTCTGACCGGCAGCCAATCCT ACAATGGCCGCTCAATCAGGGCCGGCCTGGTGGCAGCATGTGACAACATCAACACCTACCTCACCCGGCACGGCTATCCG GTCAAGATAGCGCTGGACATTATCGACACCGGCTCCGATGCCGACCAGGCATTGGCCGGTTTTACGACACTGGCTGATCG CGGGATCAGGTTCATTGTCGGTCCGGTGACCAGCGCTGAGTGCCAGCGGGTGCTATCGGCAGCCAACAGCCGCGGTGTCA TCCTGCTCAGTCCGTCAAGTAATGCCATCCAGCTGGCACAACCCGGCGACAACCTGATCCGTTTTGTACCGAGCGCAACG CTTGAGGCCCAGGCCCTGGCCATGCTCTTGTATGAACAGGGGGTGCGCTCCCTGGCAATCATGGCCCGCAACGACATCTG GGGAACGGATCTGGCAAGCCGTACCGCCAGTGAATTTCAGGCGCTGGGCGGAACGATCATGACCAGCGTCACCTATCCGA CGGACACCGTCAATTTTGCCGGCCAGCTGGCCACCCTTGCCGGTGCCCTGAACTCGGCTACACCGGCAAGTACCGCAGTG TTGACCGCCTCCTTTGATGAAATCACCGAGATCTTTCTCCAGGCCCCCGCGTACCCCTCCCTTGCCACGGTAAAGTGGTA CGGCAGCGACGGATCGGCCCAGAATGAACGGCTTGCAGCAACCCCTGCAGCAGCAGCCTATGCTGCGGCACGCAGCTTCA CCTGCCCGATCGAGCATGTCTTTATCCAGCACGCGCCCCAGCCGAACTCGATTACAAAGCTGGTTATCCGGGACGACATC CGGGAGGCCTATAACGGTATCCCCGCGCTTTACGCCTACCCGGCCTGGGATGCCCTCTGGATCATCGTAACGGCGTTGCT CGACAGTGAATGGTCAACCGACCCGACGGTGCTGCGAAGCGCTGTCCTGAGCGGGTCGGACCACTACATCGGCATGAGCA ACTTCATGGGGCTGGATGCAAACGGTGACAGAAAATACGGTGACTATGCCTTTTTCACCCTGACGCAGGGCACTGCCGCC TATAGCTGGAACCCTTTTGCAACCTTCCATTACCATCCGGTTCTCTACCTGACACCGAAAATAACCTATCCTTAG
Upstream 100 bases:
>100_bases GCTCCTGAAACCCGGGAATACTGCATAACAAGCTGCAATTAGTCTAATTCCCCTGCAGCGCAATCAAGTTGCGCCGCAGT CAATTGCAAGGAGTGCTACG
Downstream 100 bases:
>100_bases GAGCAAAACATGGCATGCAAGACGCAAGACAGCAGCAGCAAGCCTACCGGTAGCGATGTCCCGACCCCGGTAGCCGGCAT GGCCGGTCACCGGGTGGCGG
Product: extracellular ligand-binding receptor
Products: ADP; phosphate; L-leucine [Cytoplasm]; ADP; L-valine [Cytoplasm]; L-iso-leucine [Cytoplasm] [C]
Alternate protein names: NA
Number of amino acids: Translated: 824; Mature: 824
Protein sequence:
>824_residues MKIRPFLLLQILLLCTLLVQGGCSSSSSSSSSTPQTISIGVLAPLTGSLKHIGEGMQAALTVGLPQVNRRLTLEGQNFRL TTVVKDTASDPQGALLALLALKAQGIRFVIGPVSSAECAAILPMANSLGMILISPASTATSLAIAGDNLFRLMPNDNSQG AGTAALMLKKGFTAMVPVWRGDVWGDDLKTSITTAFQTGGGTVLSGVRYAPGAGAYDSELDQAAAQVSQALTTHGAGKVA VVMISYPTDSVALLNAAASRPSLAQAAWFGSDASTLSPLITASATASAFAAQTNLLSPIFSREDVVLPLPGTVLIDRALR EKLSQQLGRQADSTTFATWDALWLTAKTYTASGINADTETLKTGLVATAKSNVGLNGALVMNAAGDMNKGNYAFYSIAAN GSSYAWQLKAAYQYEQQATPKIIDVSEPVLKGLTPPAAEVRIGALLSLTGSQSYNGRSIRAGLVAACDNINTYLTRHGYP VKIALDIIDTGSDADQALAGFTTLADRGIRFIVGPVTSAECQRVLSAANSRGVILLSPSSNAIQLAQPGDNLIRFVPSAT LEAQALAMLLYEQGVRSLAIMARNDIWGTDLASRTASEFQALGGTIMTSVTYPTDTVNFAGQLATLAGALNSATPASTAV LTASFDEITEIFLQAPAYPSLATVKWYGSDGSAQNERLAATPAAAAYAAARSFTCPIEHVFIQHAPQPNSITKLVIRDDI REAYNGIPALYAYPAWDALWIIVTALLDSEWSTDPTVLRSAVLSGSDHYIGMSNFMGLDANGDRKYGDYAFFTLTQGTAA YSWNPFATFHYHPVLYLTPKITYP
Sequences:
>Translated_824_residues MKIRPFLLLQILLLCTLLVQGGCSSSSSSSSSTPQTISIGVLAPLTGSLKHIGEGMQAALTVGLPQVNRRLTLEGQNFRL TTVVKDTASDPQGALLALLALKAQGIRFVIGPVSSAECAAILPMANSLGMILISPASTATSLAIAGDNLFRLMPNDNSQG AGTAALMLKKGFTAMVPVWRGDVWGDDLKTSITTAFQTGGGTVLSGVRYAPGAGAYDSELDQAAAQVSQALTTHGAGKVA VVMISYPTDSVALLNAAASRPSLAQAAWFGSDASTLSPLITASATASAFAAQTNLLSPIFSREDVVLPLPGTVLIDRALR EKLSQQLGRQADSTTFATWDALWLTAKTYTASGINADTETLKTGLVATAKSNVGLNGALVMNAAGDMNKGNYAFYSIAAN GSSYAWQLKAAYQYEQQATPKIIDVSEPVLKGLTPPAAEVRIGALLSLTGSQSYNGRSIRAGLVAACDNINTYLTRHGYP VKIALDIIDTGSDADQALAGFTTLADRGIRFIVGPVTSAECQRVLSAANSRGVILLSPSSNAIQLAQPGDNLIRFVPSAT LEAQALAMLLYEQGVRSLAIMARNDIWGTDLASRTASEFQALGGTIMTSVTYPTDTVNFAGQLATLAGALNSATPASTAV LTASFDEITEIFLQAPAYPSLATVKWYGSDGSAQNERLAATPAAAAYAAARSFTCPIEHVFIQHAPQPNSITKLVIRDDI REAYNGIPALYAYPAWDALWIIVTALLDSEWSTDPTVLRSAVLSGSDHYIGMSNFMGLDANGDRKYGDYAFFTLTQGTAA YSWNPFATFHYHPVLYLTPKITYP >Mature_824_residues MKIRPFLLLQILLLCTLLVQGGCSSSSSSSSSTPQTISIGVLAPLTGSLKHIGEGMQAALTVGLPQVNRRLTLEGQNFRL TTVVKDTASDPQGALLALLALKAQGIRFVIGPVSSAECAAILPMANSLGMILISPASTATSLAIAGDNLFRLMPNDNSQG AGTAALMLKKGFTAMVPVWRGDVWGDDLKTSITTAFQTGGGTVLSGVRYAPGAGAYDSELDQAAAQVSQALTTHGAGKVA VVMISYPTDSVALLNAAASRPSLAQAAWFGSDASTLSPLITASATASAFAAQTNLLSPIFSREDVVLPLPGTVLIDRALR EKLSQQLGRQADSTTFATWDALWLTAKTYTASGINADTETLKTGLVATAKSNVGLNGALVMNAAGDMNKGNYAFYSIAAN GSSYAWQLKAAYQYEQQATPKIIDVSEPVLKGLTPPAAEVRIGALLSLTGSQSYNGRSIRAGLVAACDNINTYLTRHGYP VKIALDIIDTGSDADQALAGFTTLADRGIRFIVGPVTSAECQRVLSAANSRGVILLSPSSNAIQLAQPGDNLIRFVPSAT LEAQALAMLLYEQGVRSLAIMARNDIWGTDLASRTASEFQALGGTIMTSVTYPTDTVNFAGQLATLAGALNSATPASTAV LTASFDEITEIFLQAPAYPSLATVKWYGSDGSAQNERLAATPAAAAYAAARSFTCPIEHVFIQHAPQPNSITKLVIRDDI REAYNGIPALYAYPAWDALWIIVTALLDSEWSTDPTVLRSAVLSGSDHYIGMSNFMGLDANGDRKYGDYAFFTLTQGTAA YSWNPFATFHYHPVLYLTPKITYP
Specific function: This Protein Is A Component Of The Leucine, Isoleucine, Valine, (Threonine) Transport System, Which Is One Of The Two Periplasmic Binding Protein-Dependent Transport Systems Of The High-Affinity Transport Of The Branched-Chain Amino Acids. [C]
COG id: COG0683
COG function: function code E; ABC-type branched-chain amino acid transport systems, periplasmic component
Gene ontology:
Cell location: Periplasmic Protein [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: 10140 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 1160 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 8822 Molecules/Cell In: Growth Phase, Glucose-minimal MOPS Media. 8,000 Molecules/Cell In: Glucose minimal med
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001828 [H]
Pfam domain/function: PF01094 ANF_receptor [H]
EC number: NA
Molecular weight: Translated: 86635; Mature: 86635
Theoretical pI: Translated: 5.92; Mature: 5.92
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 1.8 %Met (Translated Protein) 2.5 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 1.8 %Met (Mature Protein) 2.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKIRPFLLLQILLLCTLLVQGGCSSSSSSSSSTPQTISIGVLAPLTGSLKHIGEGMQAAL CCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEEECCCCCCHHHHCCCCCEEE TVGLPQVNRRLTLEGQNFRLTTVVKDTASDPQGALLALLALKAQGIRFVIGPVSSAECAA EECCCCCCCEEEEECCCEEEEEEEECCCCCCCHHHHHHHHHHCCCCEEEEECCCCCCCEE ILPMANSLGMILISPASTATSLAIAGDNLFRLMPNDNSQGAGTAALMLKKGFTAMVPVWR EEECCCCCCEEEEECCCCCEEEEEECCCEEEECCCCCCCCCCCEEEEECCCCEEEEEEEC GDVWGDDLKTSITTAFQTGGGTVLSGVRYAPGAGAYDSELDQAAAQVSQALTTHGAGKVA CCCCCCCHHHHHHEEEECCCCCEECCCEECCCCCCCHHHHHHHHHHHHHHHHHCCCCCEE VVMISYPTDSVALLNAAASRPSLAQAAWFGSDASTLSPLITASATASAFAAQTNLLSPIF EEEEECCCCCCHHHHHHCCCCCHHHHHCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHH SREDVVLPLPGTVLIDRALREKLSQQLGRQADSTTFATWDALWLTAKTYTASGINADTET CCCCEEEECCCHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEEEEEEEEECCCCCCCHHH LKTGLVATAKSNVGLNGALVMNAAGDMNKGNYAFYSIAANGSSYAWQLKAAYQYEQQATP HHHCEEEEECCCCCCCEEEEEECCCCCCCCCEEEEEEEECCCCEEEEEEEEHHHHHCCCC KIIDVSEPVLKGLTPPAAEVRIGALLSLTGSQSYNGRSIRAGLVAACDNINTYLTRHGYP CEEECCCHHHHCCCCCHHHEEEEEEEEECCCCCCCCCEEHHHHHHHHCCCCHHHHCCCCE VKIALDIIDTGSDADQALAGFTTLADRGIRFIVGPVTSAECQRVLSAANSRGVILLSPSS EEEEEEEEECCCCHHHHHHHHHHHHHCCCEEEECCCCHHHHHHHHHCCCCCCEEEECCCC NAIQLAQPGDNLIRFVPSATLEAQALAMLLYEQGVRSLAIMARNDIWGTDLASRTASEFQ CEEEEECCCCHHEEECCCCCHHHHHHHHHHHHHCHHHEEEEECCCCCCCCHHHHHHHHHH ALGGTIMTSVTYPTDTVNFAGQLATLAGALNSATPASTAVLTASFDEITEIFLQAPAYPS HCCCEEEEEEECCCCCHHHHHHHHHHHHHHCCCCCCCEEEEEECHHHHHHHHHCCCCCCC LATVKWYGSDGSAQNERLAATPAAAAYAAARSFTCPIEHVFIQHAPQPNSITKLVIRDDI EEEEEEECCCCCCCCCEEECCCHHHHHHHHCCCCCCHHHHHEECCCCCCCCEEEEEHHHH REAYNGIPALYAYPAWDALWIIVTALLDSEWSTDPTVLRSAVLSGSDHYIGMSNFMGLDA HHHHCCCCEEEECCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCCCEEEHHHCCCCCC NGDRKYGDYAFFTLTQGTAAYSWNPFATFHYHPVLYLTPKITYP CCCCCCCCEEEEEEECCCEEECCCCCEEEEECEEEEEECEECCC >Mature Secondary Structure MKIRPFLLLQILLLCTLLVQGGCSSSSSSSSSTPQTISIGVLAPLTGSLKHIGEGMQAAL CCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEEECCCCCCHHHHCCCCCEEE TVGLPQVNRRLTLEGQNFRLTTVVKDTASDPQGALLALLALKAQGIRFVIGPVSSAECAA EECCCCCCCEEEEECCCEEEEEEEECCCCCCCHHHHHHHHHHCCCCEEEEECCCCCCCEE ILPMANSLGMILISPASTATSLAIAGDNLFRLMPNDNSQGAGTAALMLKKGFTAMVPVWR EEECCCCCCEEEEECCCCCEEEEEECCCEEEECCCCCCCCCCCEEEEECCCCEEEEEEEC GDVWGDDLKTSITTAFQTGGGTVLSGVRYAPGAGAYDSELDQAAAQVSQALTTHGAGKVA CCCCCCCHHHHHHEEEECCCCCEECCCEECCCCCCCHHHHHHHHHHHHHHHHHCCCCCEE VVMISYPTDSVALLNAAASRPSLAQAAWFGSDASTLSPLITASATASAFAAQTNLLSPIF EEEEECCCCCCHHHHHHCCCCCHHHHHCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHH SREDVVLPLPGTVLIDRALREKLSQQLGRQADSTTFATWDALWLTAKTYTASGINADTET CCCCEEEECCCHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEEEEEEEEECCCCCCCHHH LKTGLVATAKSNVGLNGALVMNAAGDMNKGNYAFYSIAANGSSYAWQLKAAYQYEQQATP HHHCEEEEECCCCCCCEEEEEECCCCCCCCCEEEEEEEECCCCEEEEEEEEHHHHHCCCC KIIDVSEPVLKGLTPPAAEVRIGALLSLTGSQSYNGRSIRAGLVAACDNINTYLTRHGYP CEEECCCHHHHCCCCCHHHEEEEEEEEECCCCCCCCCEEHHHHHHHHCCCCHHHHCCCCE VKIALDIIDTGSDADQALAGFTTLADRGIRFIVGPVTSAECQRVLSAANSRGVILLSPSS EEEEEEEEECCCCHHHHHHHHHHHHHCCCEEEECCCCHHHHHHHHHCCCCCCEEEECCCC NAIQLAQPGDNLIRFVPSATLEAQALAMLLYEQGVRSLAIMARNDIWGTDLASRTASEFQ CEEEEECCCCHHEEECCCCCHHHHHHHHHHHHHCHHHEEEEECCCCCCCCHHHHHHHHHH ALGGTIMTSVTYPTDTVNFAGQLATLAGALNSATPASTAVLTASFDEITEIFLQAPAYPS HCCCEEEEEEECCCCCHHHHHHHHHHHHHHCCCCCCCEEEEEECHHHHHHHHHCCCCCCC LATVKWYGSDGSAQNERLAATPAAAAYAAARSFTCPIEHVFIQHAPQPNSITKLVIRDDI EEEEEEECCCCCCCCCEEECCCHHHHHHHHCCCCCCHHHHHEECCCCCCCCEEEEEHHHH REAYNGIPALYAYPAWDALWIIVTALLDSEWSTDPTVLRSAVLSGSDHYIGMSNFMGLDA HHHHCCCCEEEECCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCCCEEEHHHCCCCCC NGDRKYGDYAFFTLTQGTAAYSWNPFATFHYHPVLYLTPKITYP CCCCCCCCEEEEEEECCCEEECCCCCEEEEECEEEEEECEECCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: ATP; L-leucine [Periplasm]; H2O; ATP; L-valine [Periplasm]; L-iso-leucine [Periplasm] [C]
Specific reaction: ATP + L-leucine [Periplasm] + H2O = ADP + phosphate + L-leucine [Cytoplasm] ATP + L-valine [Periplasm] + H2O = ADP + phosphate + L-valine [Cytoplasm] ATP + L-iso-leucine [Periplasm] + H2O = ADP + phosphate + L-iso-leucine [Cytoplasm] [C]
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 8688087 [H]