| Definition | Geobacter lovleyi SZ chromosome, complete genome. |
|---|---|
| Accession | NC_010814 |
| Length | 3,917,761 |
Click here to switch to the map view.
The map label for this gene is fixL [H]
Identifier: 189423536
GI number: 189423536
Start: 436363
End: 437772
Strand: Reverse
Name: fixL [H]
Synonym: Glov_0465
Alternate gene names: 189423536
Gene position: 437772-436363 (Counterclockwise)
Preceding gene: 189423537
Following gene: 189423535
Centisome position: 11.17
GC content: 55.04
Gene sequence:
>1410_bases ATGCGGCGGCGTTCTGAAGAGCATAGCCGGGACTGGTCTGAGCTGCGCAACCGGATCATTGGTTTGGGAGAACAGTCATC CCACAAAAACTACTATTCCGAGCTGAAGGCAAGATTGCGTGAACTTGAGGAATCAAGGAGATCGCTGGCCGCAGCCAACG CCTCGCTTCAAGCCGTAATGGATGCAGCCACTGAAGTAGCCATCATCGCCACCAGCCCGGACGGCACGATCACCATCTTC AACCAGGGGGCTGAAAACCTGTTGGGCTATCGCGCGGAAGAGTTGATCGGCACAGCAACCGTACTGCTGTTTCACCTGCC TCTGGAGGTAGAACAGCGTGGCGCCGAACTGAGCGCCCAGTACAGTCATACCGTTACCGGCTTTCAAACCTTTATCGAAT CCACAGAACATGGACACGCCGAAAAACGCGAATGGACCTATATTTGCAAAGATGGGAGATACTTGCAGGTAGAGCTGGTA GTAACGGCCATCCGGGGAGAAAACGGCGTCATTAACGGTTATCTGGGGGTGGCACAGGACATCACCGAACGCAAGCAGGC AGAAGCATCGTTGCGCCGGATGAACCTTGACCTTGAAGAGGCCCGCCAGGCCACCGAAAAGCTCAACCGGCTATTGGAAC AGCGGATCAGCGAAGCGCTCGTCGATATCCGCCATAAAGACCGGCTGCTGATCCAGCAGGGACGCCAGGCCGCCATGGGT GAAATGATCAGCAATATCGCACATCAGTGGCGACAACCGCTCAACAACATTGCACTGTTGATCCAAAACCTGCAGCTTCT CTGCAACAGCGGTGAACTGTCGCCGCAGCAATGCGACCAGGATGTGGCCAAAGCGCTGGAAATCATCCAGTTCATGTCCG GTACCATCAACAACTTCCGCAATATTTTCCGCCAGGACGCTACACCGCAACGCTTCAGTGTTAATCAGGCTGTGGCCAAG ATTGTCGATTTTCTGGCTGCCGGCATGACCGGCCACGGCATCACGGTCAGCTGTGTCGAGAAGGAAGAAGTCAGCATCAC CGGTTATCCGGGCGAGTACCATCAGGCCCTGATCAACATTCTCAACAATGCCAGGGAGGCACTCCTGTTCCGCGCGGTAC CGAAGGCCTTGATCCGGATAACGATCTTCAAGGAACAGGGTCAGGGTGTGGTGACCGTCTGGGACAATGGTGGTGGTATT GACGCTGCTATCCTGCCCAAGATTTTTGATCCTTACTTCACCACTAAATTCAAGAGTCAGGGCACCGGGCTCGGCCTCTT TATGGCCAAGGCGATTATTGAAAACAGTATGCAGGGACGACTGACCGCCCGAAACATCAATGGCGGAGCAGAACTCAGGA TTGAGGTTTCATCCCCGGAGACTGTCAGCGGCCGGCCTGTCAGCGCATAG
Upstream 100 bases:
>100_bases CACTATGAGCAGATCCCCTCGCTGGCAGAAAAAGCGATGCTGGATGCCTGCATGGTTACCAATCCGCGACGACCGACACA AAAGGATATTGAAAAGATCT
Downstream 100 bases:
>100_bases AATGGCTGTTCCAGCCCAAGGCAACCCGTTTCCCTTGCTTTTGGATTGCTGAATCGGGTAAGTTTTATCTTTTTAACTAC GGTTGATACGAGGTACCTAT
Product: PAS/PAC sensor signal transduction histidine kinase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 469; Mature: 469
Protein sequence:
>469_residues MRRRSEEHSRDWSELRNRIIGLGEQSSHKNYYSELKARLRELEESRRSLAAANASLQAVMDAATEVAIIATSPDGTITIF NQGAENLLGYRAEELIGTATVLLFHLPLEVEQRGAELSAQYSHTVTGFQTFIESTEHGHAEKREWTYICKDGRYLQVELV VTAIRGENGVINGYLGVAQDITERKQAEASLRRMNLDLEEARQATEKLNRLLEQRISEALVDIRHKDRLLIQQGRQAAMG EMISNIAHQWRQPLNNIALLIQNLQLLCNSGELSPQQCDQDVAKALEIIQFMSGTINNFRNIFRQDATPQRFSVNQAVAK IVDFLAAGMTGHGITVSCVEKEEVSITGYPGEYHQALINILNNAREALLFRAVPKALIRITIFKEQGQGVVTVWDNGGGI DAAILPKIFDPYFTTKFKSQGTGLGLFMAKAIIENSMQGRLTARNINGGAELRIEVSSPETVSGRPVSA
Sequences:
>Translated_469_residues MRRRSEEHSRDWSELRNRIIGLGEQSSHKNYYSELKARLRELEESRRSLAAANASLQAVMDAATEVAIIATSPDGTITIF NQGAENLLGYRAEELIGTATVLLFHLPLEVEQRGAELSAQYSHTVTGFQTFIESTEHGHAEKREWTYICKDGRYLQVELV VTAIRGENGVINGYLGVAQDITERKQAEASLRRMNLDLEEARQATEKLNRLLEQRISEALVDIRHKDRLLIQQGRQAAMG EMISNIAHQWRQPLNNIALLIQNLQLLCNSGELSPQQCDQDVAKALEIIQFMSGTINNFRNIFRQDATPQRFSVNQAVAK IVDFLAAGMTGHGITVSCVEKEEVSITGYPGEYHQALINILNNAREALLFRAVPKALIRITIFKEQGQGVVTVWDNGGGI DAAILPKIFDPYFTTKFKSQGTGLGLFMAKAIIENSMQGRLTARNINGGAELRIEVSSPETVSGRPVSA >Mature_469_residues MRRRSEEHSRDWSELRNRIIGLGEQSSHKNYYSELKARLRELEESRRSLAAANASLQAVMDAATEVAIIATSPDGTITIF NQGAENLLGYRAEELIGTATVLLFHLPLEVEQRGAELSAQYSHTVTGFQTFIESTEHGHAEKREWTYICKDGRYLQVELV VTAIRGENGVINGYLGVAQDITERKQAEASLRRMNLDLEEARQATEKLNRLLEQRISEALVDIRHKDRLLIQQGRQAAMG EMISNIAHQWRQPLNNIALLIQNLQLLCNSGELSPQQCDQDVAKALEIIQFMSGTINNFRNIFRQDATPQRFSVNQAVAK IVDFLAAGMTGHGITVSCVEKEEVSITGYPGEYHQALINILNNAREALLFRAVPKALIRITIFKEQGQGVVTVWDNGGGI DAAILPKIFDPYFTTKFKSQGTGLGLFMAKAIIENSMQGRLTARNINGGAELRIEVSSPETVSGRPVSA
Specific function: Putative oxygen sensor; modulates the activity of fixJ, a transcriptional activator of nitrogen fixation fixK gene. FixL probably acts as a kinase that phosphorylates fixJ [H]
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cell inner membrane; Multi-pass membrane protein [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 PAS (PER-ARNT-SIM) domain [H]
Homologues:
Organism=Escherichia coli, GI1788549, Length=427, Percent_Identity=27.4004683840749, Blast_Score=94, Evalue=3e-20,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003594 - InterPro: IPR000014 - InterPro: IPR000700 - InterPro: IPR013767 - InterPro: IPR004358 - InterPro: IPR003661 - InterPro: IPR005467 - InterPro: IPR009082 [H]
Pfam domain/function: PF02518 HATPase_c; PF00512 HisKA; PF00989 PAS [H]
EC number: =2.7.13.3 [H]
Molecular weight: Translated: 52187; Mature: 52187
Theoretical pI: Translated: 6.52; Mature: 6.52
Prosite motif: PS50112 PAS ; PS50113 PAC ; PS50109 HIS_KIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 1.9 %Met (Translated Protein) 2.8 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 1.9 %Met (Mature Protein) 2.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRRRSEEHSRDWSELRNRIIGLGEQSSHKNYYSELKARLRELEESRRSLAAANASLQAVM CCCCCCHHCCCHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH DAATEVAIIATSPDGTITIFNQGAENLLGYRAEELIGTATVLLFHLPLEVEQRGAELSAQ HHHCCEEEEEECCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCCCCHHH YSHTVTGFQTFIESTEHGHAEKREWTYICKDGRYLQVELVVTAIRGENGVINGYLGVAQD HHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCEEEEEEEEEEECCCCCEEECHHHHHHH ITERKQAEASLRRMNLDLEEARQATEKLNRLLEQRISEALVDIRHKDRLLIQQGRQAAMG HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHH EMISNIAHQWRQPLNNIALLIQNLQLLCNSGELSPQQCDQDVAKALEIIQFMSGTINNFR HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH NIFRQDATPQRFSVNQAVAKIVDFLAAGMTGHGITVSCVEKEEVSITGYPGEYHQALINI HHHHCCCCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCEEEECCCCHHHHHHHHH LNNAREALLFRAVPKALIRITIFKEQGQGVVTVWDNGGGIDAAILPKIFDPYFTTKFKSQ HHHHHHHHHHHHHHHHHEEEEEEEECCCEEEEEECCCCCCCHHHHHHHHCCHHHCCCCCC GTGLGLFMAKAIIENSMQGRLTARNINGGAELRIEVSSPETVSGRPVSA CCCHHHHHHHHHHHCCCCCCEEEEECCCCCEEEEEECCCCCCCCCCCCC >Mature Secondary Structure MRRRSEEHSRDWSELRNRIIGLGEQSSHKNYYSELKARLRELEESRRSLAAANASLQAVM CCCCCCHHCCCHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH DAATEVAIIATSPDGTITIFNQGAENLLGYRAEELIGTATVLLFHLPLEVEQRGAELSAQ HHHCCEEEEEECCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCCCCHHH YSHTVTGFQTFIESTEHGHAEKREWTYICKDGRYLQVELVVTAIRGENGVINGYLGVAQD HHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCEEEEEEEEEEECCCCCEEECHHHHHHH ITERKQAEASLRRMNLDLEEARQATEKLNRLLEQRISEALVDIRHKDRLLIQQGRQAAMG HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHH EMISNIAHQWRQPLNNIALLIQNLQLLCNSGELSPQQCDQDVAKALEIIQFMSGTINNFR HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH NIFRQDATPQRFSVNQAVAKIVDFLAAGMTGHGITVSCVEKEEVSITGYPGEYHQALINI HHHHCCCCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCEEEECCCCHHHHHHHHH LNNAREALLFRAVPKALIRITIFKEQGQGVVTVWDNGGGIDAAILPKIFDPYFTTKFKSQ HHHHHHHHHHHHHHHHHEEEEEEEECCCEEEEEECCCCCCCHHHHHHHHCCHHHCCCCCC GTGLGLFMAKAIIENSMQGRLTARNINGGAELRIEVSSPETVSGRPVSA CCCHHHHHHHHHHHCCCCCCEEEEECCCCCEEEEEECCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 2046550; 1766374 [H]