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The map label for this gene is cph2 [H]

Identifier: 189354084

GI number: 189354084

Start: 2427342

End: 2428910

Strand: Direct

Name: cph2 [H]

Synonym: BMULJ_05337

Alternate gene names: 189354084

Gene position: 2427342-2428910 (Clockwise)

Preceding gene: 189354083

Following gene: 189354085

Centisome position: 98.15

GC content: 69.02

Gene sequence:

>1569_bases
ATGGCAGAAACCGACTACGCAATGCCCCGCGAATCCGGCCTGACGAGCCGCGTCGCGACGCACCTGCGCCGGCTGCTGCT
GCCGCACCTGATCTTCTATTCCGGCCTGCTGATCGCGCTGCTGCTAATGCTGCTGTGCGCCATCGTGCTCTACGAAGGCC
GCATCGATGCGCGCGAGCGCGCACGCACGACGCTGCAGAATCTCGTGCTGATGGCATCGTGGGACATCGAGCGCAACATC
GAGATCTATTCGCTGTCGCTGCAGGCCGTCGTCGAAGGCGAAAACGATCCGGCGATCGTCGCGCTGCCGATGCCGTTGCG
CCGGCAGGTGCTGTTCGACCGCGCGACGACCGCACGCTATCTCGGCGGCATCTACGTGCTCGACAGCCGCGGCAACATCG
CGGTCGACGGCAAGAGCGACGTGCCGCGCAACGCGAATTTCGCCGACGCGCCGTACTTCAGCGTGCACCGCGACCGGCCC
GACGTCGGCCTCTACGTCAGCGATCCGTACCGCTCGCGGCTGCGCGGCGGCTCGCCGAGCATCGCGCTCAGCCGCCGCAT
CACGCGCGCGGACGGCTCGTTCGGCGGCATCGCCGTGATGTCGATCCGGCTCGAATATTTCCGCGACCTGTTCTCGCGCC
TGGCGCTCGGCGATCGCGGCGCGATGTCGCTGATCGGTACGAACGGCGTGATGGTGATGCGCGAGCCGTACGACCCGAAG
ATCGTCGGCCGCAACATCAGTCAGGCGAGCACGTTCCGTCAGTTCATGCGTGCGCGCGAAGGCAGCTTTTTCGACAGGGC
GTCGATCGACGGCGTGCGGCGGCTGTATGCGTTCCGGCACCTCGACAACCTGCCGCTGATCATGATGGTGGCCGAATCCG
AGTCGGAGATCTACGCGGCCTGGTACGACCGCGCGATCCCGATCGGTTCGGCGATGGCGCTGCTCGCGCTCGGTTTCGTC
GGCCTGTCGCTGCTGCTCGACGTGCAGTTGCGCAAGCGCCATCGCGCGGAGACCGAGCTGCAGGCGCTCGCCCGCACCGA
CGGCCTGACCGGCCTCGACAACCGCCGGATGCTCGACGTGACGCTCGCGCGCGAATGGCGGCGCGCCGCGCGCTCGCAGC
ACGCGCTGTCGCTGCTGTTCGTCGACGTCGATCACTTCAAGCGCTACAACGACTCGCAGGGCCATCAGGCCGGCGACGAC
GCGCTGGCGGCGGTCGGCCGCTGCATCGCCGGCTGCCTGCGCCGCCCGGCCGACTATGCCGCCCGCTACGGCGGCGAGGA
ATTCGTCGTGATCCTGCCCGATATCGGCAGCGACGGCGCGGTGGCCATCGCGGAGACGATCCGCACGAGCATTCTCGAAC
TCGGGATCCGGCACGACGGCAGCGCGTTCGGCTGCCTGACCGCGAGCATCGGCGTCGCGACCTGCCGGCCGGACCGCGAC
GACGACATGCACGCCGCGCTCAAGCTCGCCGACGACGCGCTGTACCGCGCGAAGGAAACCGGCCGCAACCGCGTCGTCGT
GCTCACGGCCGCGCACGCGGGCCGCCATTACGCGCCGCGCACGGCCTGA

Upstream 100 bases:

>100_bases
CCTGCTGTCCAGCCGCGTGCGATAGCGTGCCGGCTCGTCGTCAGCCTCCCTTGCGACCAACCGCATCGGCGCGCCGCCGA
TGCCCGACGATCCACGAATC

Downstream 100 bases:

>100_bases
GCGCACGCGCGCCGCACCCGCGCGCGCAAAATCGTCGACAATACCGGCTCGCTCCGCCGGCCGCGCGCCGGCGGCAAGCG
TGCCGGCCGGCGCCGGCGCG

Product: putative diguanylate cyclase

Products: NA

Alternate protein names: Bacteriophytochrome cph2 [H]

Number of amino acids: Translated: 522; Mature: 521

Protein sequence:

>522_residues
MAETDYAMPRESGLTSRVATHLRRLLLPHLIFYSGLLIALLLMLLCAIVLYEGRIDARERARTTLQNLVLMASWDIERNI
EIYSLSLQAVVEGENDPAIVALPMPLRRQVLFDRATTARYLGGIYVLDSRGNIAVDGKSDVPRNANFADAPYFSVHRDRP
DVGLYVSDPYRSRLRGGSPSIALSRRITRADGSFGGIAVMSIRLEYFRDLFSRLALGDRGAMSLIGTNGVMVMREPYDPK
IVGRNISQASTFRQFMRAREGSFFDRASIDGVRRLYAFRHLDNLPLIMMVAESESEIYAAWYDRAIPIGSAMALLALGFV
GLSLLLDVQLRKRHRAETELQALARTDGLTGLDNRRMLDVTLAREWRRAARSQHALSLLFVDVDHFKRYNDSQGHQAGDD
ALAAVGRCIAGCLRRPADYAARYGGEEFVVILPDIGSDGAVAIAETIRTSILELGIRHDGSAFGCLTASIGVATCRPDRD
DDMHAALKLADDALYRAKETGRNRVVVLTAAHAGRHYAPRTA

Sequences:

>Translated_522_residues
MAETDYAMPRESGLTSRVATHLRRLLLPHLIFYSGLLIALLLMLLCAIVLYEGRIDARERARTTLQNLVLMASWDIERNI
EIYSLSLQAVVEGENDPAIVALPMPLRRQVLFDRATTARYLGGIYVLDSRGNIAVDGKSDVPRNANFADAPYFSVHRDRP
DVGLYVSDPYRSRLRGGSPSIALSRRITRADGSFGGIAVMSIRLEYFRDLFSRLALGDRGAMSLIGTNGVMVMREPYDPK
IVGRNISQASTFRQFMRAREGSFFDRASIDGVRRLYAFRHLDNLPLIMMVAESESEIYAAWYDRAIPIGSAMALLALGFV
GLSLLLDVQLRKRHRAETELQALARTDGLTGLDNRRMLDVTLAREWRRAARSQHALSLLFVDVDHFKRYNDSQGHQAGDD
ALAAVGRCIAGCLRRPADYAARYGGEEFVVILPDIGSDGAVAIAETIRTSILELGIRHDGSAFGCLTASIGVATCRPDRD
DDMHAALKLADDALYRAKETGRNRVVVLTAAHAGRHYAPRTA
>Mature_521_residues
AETDYAMPRESGLTSRVATHLRRLLLPHLIFYSGLLIALLLMLLCAIVLYEGRIDARERARTTLQNLVLMASWDIERNIE
IYSLSLQAVVEGENDPAIVALPMPLRRQVLFDRATTARYLGGIYVLDSRGNIAVDGKSDVPRNANFADAPYFSVHRDRPD
VGLYVSDPYRSRLRGGSPSIALSRRITRADGSFGGIAVMSIRLEYFRDLFSRLALGDRGAMSLIGTNGVMVMREPYDPKI
VGRNISQASTFRQFMRAREGSFFDRASIDGVRRLYAFRHLDNLPLIMMVAESESEIYAAWYDRAIPIGSAMALLALGFVG
LSLLLDVQLRKRHRAETELQALARTDGLTGLDNRRMLDVTLAREWRRAARSQHALSLLFVDVDHFKRYNDSQGHQAGDDA
LAAVGRCIAGCLRRPADYAARYGGEEFVVILPDIGSDGAVAIAETIRTSILELGIRHDGSAFGCLTASIGVATCRPDRDD
DMHAALKLADDALYRAKETGRNRVVVLTAAHAGRHYAPRTA

Specific function: Photoreceptor which exists in two forms that are reversibly interconvertible by light:the R form that absorbs maximally in the red region of the spectrum and the FR form that absorbs maximally in the far-red region [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 GGDEF domains [H]

Homologues:

Organism=Escherichia coli, GI87081881, Length=186, Percent_Identity=40.3225806451613, Blast_Score=117, Evalue=2e-27,
Organism=Escherichia coli, GI145693134, Length=165, Percent_Identity=36.969696969697, Blast_Score=103, Evalue=4e-23,
Organism=Escherichia coli, GI1787262, Length=229, Percent_Identity=34.061135371179, Blast_Score=102, Evalue=5e-23,
Organism=Escherichia coli, GI87082007, Length=170, Percent_Identity=41.1764705882353, Blast_Score=100, Evalue=3e-22,
Organism=Escherichia coli, GI1786584, Length=168, Percent_Identity=37.5, Blast_Score=100, Evalue=3e-22,
Organism=Escherichia coli, GI1787541, Length=180, Percent_Identity=33.3333333333333, Blast_Score=81, Evalue=2e-16,
Organism=Escherichia coli, GI87081974, Length=159, Percent_Identity=29.559748427673, Blast_Score=80, Evalue=4e-16,
Organism=Escherichia coli, GI1787802, Length=138, Percent_Identity=35.5072463768116, Blast_Score=79, Evalue=1e-15,
Organism=Escherichia coli, GI1788381, Length=181, Percent_Identity=33.1491712707182, Blast_Score=77, Evalue=3e-15,
Organism=Escherichia coli, GI87081977, Length=217, Percent_Identity=30.8755760368664, Blast_Score=74, Evalue=2e-14,
Organism=Escherichia coli, GI1787816, Length=167, Percent_Identity=32.9341317365269, Blast_Score=74, Evalue=3e-14,
Organism=Escherichia coli, GI1788085, Length=212, Percent_Identity=29.2452830188679, Blast_Score=73, Evalue=3e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR003018
- InterPro:   IPR016132
- InterPro:   IPR001294
- InterPro:   IPR013515 [H]

Pfam domain/function: PF00563 EAL; PF01590 GAF; PF00990 GGDEF; PF00360 Phytochrome [H]

EC number: NA

Molecular weight: Translated: 57857; Mature: 57726

Theoretical pI: Translated: 9.00; Mature: 9.00

Prosite motif: PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAETDYAMPRESGLTSRVATHLRRLLLPHLIFYSGLLIALLLMLLCAIVLYEGRIDARER
CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHH
ARTTLQNLVLMASWDIERNIEIYSLSLQAVVEGENDPAIVALPMPLRRQVLFDRATTARY
HHHHHHHHHEEEECCCCCCEEEEEEEEEEEEECCCCCEEEEECCCHHHHHHHHHHHHHHH
LGGIYVLDSRGNIAVDGKSDVPRNANFADAPYFSVHRDRPDVGLYVSDPYRSRLRGGSPS
HCCEEEEECCCCEEECCCCCCCCCCCCCCCCCEEEECCCCCEEEEECCCHHHHHCCCCCC
IALSRRITRADGSFGGIAVMSIRLEYFRDLFSRLALGDRGAMSLIGTNGVMVMREPYDPK
EEHHHEEECCCCCCCCEEHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCEEEEECCCCCC
IVGRNISQASTFRQFMRAREGSFFDRASIDGVRRLYAFRHLDNLPLIMMVAESESEIYAA
EECCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCEEEE
WYDRAIPIGSAMALLALGFVGLSLLLDVQLRKRHRAETELQALARTDGLTGLDNRRMLDV
HHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEH
TLAREWRRAARSQHALSLLFVDVDHFKRYNDSQGHQAGDDALAAVGRCIAGCLRRPADYA
HHHHHHHHHHHHHHCEEEEEEEHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHCCCHHHH
ARYGGEEFVVILPDIGSDGAVAIAETIRTSILELGIRHDGSAFGCLTASIGVATCRPDRD
HHCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHCCCCCCCEEEEHHHHCCCEECCCCCC
DDMHAALKLADDALYRAKETGRNRVVVLTAAHAGRHYAPRTA
CCHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCC
>Mature Secondary Structure 
AETDYAMPRESGLTSRVATHLRRLLLPHLIFYSGLLIALLLMLLCAIVLYEGRIDARER
CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHH
ARTTLQNLVLMASWDIERNIEIYSLSLQAVVEGENDPAIVALPMPLRRQVLFDRATTARY
HHHHHHHHHEEEECCCCCCEEEEEEEEEEEEECCCCCEEEEECCCHHHHHHHHHHHHHHH
LGGIYVLDSRGNIAVDGKSDVPRNANFADAPYFSVHRDRPDVGLYVSDPYRSRLRGGSPS
HCCEEEEECCCCEEECCCCCCCCCCCCCCCCCEEEECCCCCEEEEECCCHHHHHCCCCCC
IALSRRITRADGSFGGIAVMSIRLEYFRDLFSRLALGDRGAMSLIGTNGVMVMREPYDPK
EEHHHEEECCCCCCCCEEHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCEEEEECCCCCC
IVGRNISQASTFRQFMRAREGSFFDRASIDGVRRLYAFRHLDNLPLIMMVAESESEIYAA
EECCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCEEEE
WYDRAIPIGSAMALLALGFVGLSLLLDVQLRKRHRAETELQALARTDGLTGLDNRRMLDV
HHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEH
TLAREWRRAARSQHALSLLFVDVDHFKRYNDSQGHQAGDDALAAVGRCIAGCLRRPADYA
HHHHHHHHHHHHHHCEEEEEEEHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHCCCHHHH
ARYGGEEFVVILPDIGSDGAVAIAETIRTSILELGIRHDGSAFGCLTASIGVATCRPDRD
HHCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHCCCCCCCEEEEHHHHCCCEECCCCCC
DDMHAALKLADDALYRAKETGRNRVVVLTAAHAGRHYAPRTA
CCHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8590279; 8905231; 10978170; 11063585 [H]