Click here to switch to the map view.

The map label for this gene is cydA [H]

Identifier: 189353965

GI number: 189353965

Start: 2280375

End: 2281787

Strand: Direct

Name: cydA [H]

Synonym: BMULJ_05218

Alternate gene names: 189353965

Gene position: 2280375-2281787 (Clockwise)

Preceding gene: 189353961

Following gene: 189353966

Centisome position: 92.2

GC content: 65.11

Gene sequence:

>1413_bases
ATGGACACCGCTTTTTCGGCCCTCGATCTGGCCCGCCTGCAATTCGCGTTCACCGTCTCCTTCCACATCGTCTTTCCGGC
CATGAGCATCGGGCTCGCGAGCTTCATCGCCGTGCTCGAATACCGCTGGCTGAAAACCGGCAAGGCGTACTACAAGACGC
TGTGCCTCTTCTGGTCGAAGATCTTCGCCGTCGCGTTCGGGATGGGCGTCGTCTCGGGCGTCGTGATGAGCTATCAGTTC
GGCACGAACTGGTCCGGGTTCTCGAGCTTCGCCGGGTCGGTCACGGGCCCGCTGCTGATGTACGAGGTGATGACCGCGTT
CTTCCTTGAAGCAGGCTTCCTCGGCATCATGCTGTTCGGCTGGAATCGCGTGAGCCCGCGCGCGCACTTCGGCGCGACGC
TGATGGTCGCGATCGGCACGCTGATCTCGACGTTCTGGATCCTCGCGTCGAACAGCTGGATGCAGACGCCGCAGGGCTTC
GAGATCGTCGACGGCCGCATTGTGCCGACCGACTGGTTCGCGATCATCTTCAACCCCTCGTTCCCGTACCGGCTGCTGCA
CATGGCGATCGCCGCGTTTATCGTCGCCGCGCTGGTGGTGGCCGCGACGGGCGCGTATCACCTGCTGAAAGGCCGCCGCG
ACAAGAGCGTGAAGAAGATGTTCTCGATGGCGCTGTGGCTGCTGCTCGTGCTCGCACCGGTGCAGGCGATCATCGGCGAC
CAGCACGGCCTCAACACGCTGAAGCATCAGCCGGCGAAGATCGCCGCGATCGAAGGGCTGTGGGAAACCGAGAAGGGCGG
CACCGCGCTGAACCTGTTCGGCATTCCGGACATGAAGGCCGAGACGACGCGCTACGCCGTCAAGGTGCCGCATCTCGGCA
GCCTGATCCTCACGCATAGCTGGGACGGCGAGATCCGCGGGCTGAAGGAATTCCCGCCGGAAGACCGTCCGAATTCGACG
CTCGTGTTCTGGAGCTTCCGGATCATGGTCGGCCTCGGCTTCGCGATGATCGGTCTTGCCGTGCTCGCGTGGTTCCTGCG
CCGCCGCGGCCGCCTGTATGAGTCGAAGCTGCTGCAGCGCTTCGCGCTCGTGATGGGCCCGGCCGGCTTCGTGTCGCTGC
TCGCCGGCTGGGTGACGACCGAAGCGGGCCGTCAGCCGTGGGTCGTGTACGGCGTGATGCGCACCGCGCATGCGGTGTCG
CCGCTGACGGTGCAGCAGGTCAGCGTGTCGATGATGACCTTCGTGATCGTGTACTTCCTCGTGTTCGGCACCGGCGTCTA
CTACATGCTGAAGCTGATGAAGGCCGGCCCCGCGCTGCCCGACGCGAAGCACGACGACACGCCCGACACGCGCCGCGATC
ACACCGCGCGCCGCCCGATGTCGGCCGTCGACGAACCGCTCGAGACCGTCTGA

Upstream 100 bases:

>100_bases
GCGACGCAACATCGCGTCCGATACTCCAGCCAACCCCGCAGCGCTGTGCCGGGGTCCGCCGGCATCCGTCGGCGGGTATC
GTCTGCTTCGGTCAACTGGT

Downstream 100 bases:

>100_bases
CCCGCCACCCCATCCGCATACGAGAAAACTATGGACGTCACCGTAATCTGGGCCGCGATCATCGCATTGGGGCTCTTCAT
GTACGTCGTGCTCGACGGCT

Product: cytochrome bd-I oxidase subunit I

Products: Ubiquinone-8; H2O. [C]

Alternate protein names: Cytochrome d ubiquinol oxidase subunit I [H]

Number of amino acids: Translated: 470; Mature: 470

Protein sequence:

>470_residues
MDTAFSALDLARLQFAFTVSFHIVFPAMSIGLASFIAVLEYRWLKTGKAYYKTLCLFWSKIFAVAFGMGVVSGVVMSYQF
GTNWSGFSSFAGSVTGPLLMYEVMTAFFLEAGFLGIMLFGWNRVSPRAHFGATLMVAIGTLISTFWILASNSWMQTPQGF
EIVDGRIVPTDWFAIIFNPSFPYRLLHMAIAAFIVAALVVAATGAYHLLKGRRDKSVKKMFSMALWLLLVLAPVQAIIGD
QHGLNTLKHQPAKIAAIEGLWETEKGGTALNLFGIPDMKAETTRYAVKVPHLGSLILTHSWDGEIRGLKEFPPEDRPNST
LVFWSFRIMVGLGFAMIGLAVLAWFLRRRGRLYESKLLQRFALVMGPAGFVSLLAGWVTTEAGRQPWVVYGVMRTAHAVS
PLTVQQVSVSMMTFVIVYFLVFGTGVYYMLKLMKAGPALPDAKHDDTPDTRRDHTARRPMSAVDEPLETV

Sequences:

>Translated_470_residues
MDTAFSALDLARLQFAFTVSFHIVFPAMSIGLASFIAVLEYRWLKTGKAYYKTLCLFWSKIFAVAFGMGVVSGVVMSYQF
GTNWSGFSSFAGSVTGPLLMYEVMTAFFLEAGFLGIMLFGWNRVSPRAHFGATLMVAIGTLISTFWILASNSWMQTPQGF
EIVDGRIVPTDWFAIIFNPSFPYRLLHMAIAAFIVAALVVAATGAYHLLKGRRDKSVKKMFSMALWLLLVLAPVQAIIGD
QHGLNTLKHQPAKIAAIEGLWETEKGGTALNLFGIPDMKAETTRYAVKVPHLGSLILTHSWDGEIRGLKEFPPEDRPNST
LVFWSFRIMVGLGFAMIGLAVLAWFLRRRGRLYESKLLQRFALVMGPAGFVSLLAGWVTTEAGRQPWVVYGVMRTAHAVS
PLTVQQVSVSMMTFVIVYFLVFGTGVYYMLKLMKAGPALPDAKHDDTPDTRRDHTARRPMSAVDEPLETV
>Mature_470_residues
MDTAFSALDLARLQFAFTVSFHIVFPAMSIGLASFIAVLEYRWLKTGKAYYKTLCLFWSKIFAVAFGMGVVSGVVMSYQF
GTNWSGFSSFAGSVTGPLLMYEVMTAFFLEAGFLGIMLFGWNRVSPRAHFGATLMVAIGTLISTFWILASNSWMQTPQGF
EIVDGRIVPTDWFAIIFNPSFPYRLLHMAIAAFIVAALVVAATGAYHLLKGRRDKSVKKMFSMALWLLLVLAPVQAIIGD
QHGLNTLKHQPAKIAAIEGLWETEKGGTALNLFGIPDMKAETTRYAVKVPHLGSLILTHSWDGEIRGLKEFPPEDRPNST
LVFWSFRIMVGLGFAMIGLAVLAWFLRRRGRLYESKLLQRFALVMGPAGFVSLLAGWVTTEAGRQPWVVYGVMRTAHAVS
PLTVQQVSVSMMTFVIVYFLVFGTGVYYMLKLMKAGPALPDAKHDDTPDTRRDHTARRPMSAVDEPLETV

Specific function: Cytochrome D Terminal Oxidase Complex Is The Component Of The Aerobic Respiratory Chain Of E.Coli That Predominates When Cells Are Grown At Low Aeration. [C]

COG id: COG1271

COG function: function code C; Cytochrome bd-type quinol oxidase, subunit 1

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the cytochrome ubiquinol oxidase subunit 1 family [H]

Homologues:

Organism=Escherichia coli, GI87081779, Length=498, Percent_Identity=30.3212851405622, Blast_Score=253, Evalue=2e-68,
Organism=Escherichia coli, GI1787212, Length=318, Percent_Identity=34.5911949685535, Blast_Score=218, Evalue=8e-58,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002585 [H]

Pfam domain/function: PF01654 Bac_Ubq_Cox [H]

EC number: 1.10.3.- [C]

Molecular weight: Translated: 52147; Mature: 52147

Theoretical pI: Translated: 10.06; Mature: 10.06

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
4.7 %Met     (Translated Protein)
4.9 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
4.7 %Met     (Mature Protein)
4.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDTAFSALDLARLQFAFTVSFHIVFPAMSIGLASFIAVLEYRWLKTGKAYYKTLCLFWSK
CCCHHHHHHHHHHHHHHEEEHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
IFAVAFGMGVVSGVVMSYQFGTNWSGFSSFAGSVTGPLLMYEVMTAFFLEAGFLGIMLFG
HHHHHHHHHHHHHHHHHEECCCCCCCHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHEEC
WNRVSPRAHFGATLMVAIGTLISTFWILASNSWMQTPQGFEIVDGRIVPTDWFAIIFNPS
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEECCEEECCCEEEEEECCC
FPYRLLHMAIAAFIVAALVVAATGAYHLLKGRRDKSVKKMFSMALWLLLVLAPVQAIIGD
CHHHHHHHHHHHHHHHHHHHHHCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCC
QHGLNTLKHQPAKIAAIEGLWETEKGGTALNLFGIPDMKAETTRYAVKVPHLGSLILTHS
CCCCHHHHCCCCCEEHHHCCCCCCCCCCEEEEECCCCCCCCCCEEEEECCCCCCEEEEEC
WDGEIRGLKEFPPEDRPNSTLVFWSFRIMVGLGFAMIGLAVLAWFLRRRGRLYESKLLQR
CCCCCCCHHCCCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHH
FALVMGPAGFVSLLAGWVTTEAGRQPWVVYGVMRTAHAVSPLTVQQVSVSMMTFVIVYFL
HHHHHCCHHHHHHHHHHHHHCCCCCCEEEHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
VFGTGVYYMLKLMKAGPALPDAKHDDTPDTRRDHTARRPMSAVDEPLETV
HHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHCCCHHHHCCHHHCC
>Mature Secondary Structure
MDTAFSALDLARLQFAFTVSFHIVFPAMSIGLASFIAVLEYRWLKTGKAYYKTLCLFWSK
CCCHHHHHHHHHHHHHHEEEHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
IFAVAFGMGVVSGVVMSYQFGTNWSGFSSFAGSVTGPLLMYEVMTAFFLEAGFLGIMLFG
HHHHHHHHHHHHHHHHHEECCCCCCCHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHEEC
WNRVSPRAHFGATLMVAIGTLISTFWILASNSWMQTPQGFEIVDGRIVPTDWFAIIFNPS
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEECCEEECCCEEEEEECCC
FPYRLLHMAIAAFIVAALVVAATGAYHLLKGRRDKSVKKMFSMALWLLLVLAPVQAIIGD
CHHHHHHHHHHHHHHHHHHHHHCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCC
QHGLNTLKHQPAKIAAIEGLWETEKGGTALNLFGIPDMKAETTRYAVKVPHLGSLILTHS
CCCCHHHHCCCCCEEHHHCCCCCCCCCCEEEEECCCCCCCCCCEEEEECCCCCCEEEEEC
WDGEIRGLKEFPPEDRPNSTLVFWSFRIMVGLGFAMIGLAVLAWFLRRRGRLYESKLLQR
CCCCCCCHHCCCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHH
FALVMGPAGFVSLLAGWVTTEAGRQPWVVYGVMRTAHAVSPLTVQQVSVSMMTFVIVYFL
HHHHHCCHHHHHHHHHHHHHCCCCCCEEEHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
VFGTGVYYMLKLMKAGPALPDAKHDDTPDTRRDHTARRPMSAVDEPLETV
HHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHCCCHHHHCCHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: Fe [C]

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: Ubiquinol-8; O(2) [C]

Specific reaction: Ubiquinol-8 + O(2) = Ubiquinone-8 + H2O. [C]

General reaction: Oxidoreductases; Acting on diphenols and related substances as donors; With oxygen as acceptor [C]

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8969509; 9384377 [H]