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The map label for this gene is cydB [H]

Identifier: 189353966

GI number: 189353966

Start: 2281818

End: 2282825

Strand: Direct

Name: cydB [H]

Synonym: BMULJ_05219

Alternate gene names: 189353966

Gene position: 2281818-2282825 (Clockwise)

Preceding gene: 189353965

Following gene: 189353967

Centisome position: 92.26

GC content: 65.77

Gene sequence:

>1008_bases
ATGGACGTCACCGTAATCTGGGCCGCGATCATCGCATTGGGGCTCTTCATGTACGTCGTGCTCGACGGCTTCGACCTCGG
CATCGGCATCGTCTTCCCGTTCTTCCCGGACGAGAAGGAACGCGACCTGATGATGAACACGGTCGCGCCCGTGTGGGACG
GCAACGAAACGTGGCTCGTGCTCGGCGGCGCCGGGCTGTTCGCCGTGTTTCCGGTCGTCTATTCGACCGTGCTGTCCGCG
CTCTATCTGCCGCTGATCTTCATGCTCGTCTGCCTGATCTTCCGCGGCGTATCGTTCGAACTGCGCGCGAAGGCGCGCCG
CACGAAACATCTGTGGGATCTCGCGTTCATCGGCGGCTCGGCCGGCGCGACGTTCTTCCAGGGTGTCGCGCTCGGTGCGT
TCCTGCAGGGCATCGACGTGAAGGACGGCGTGTTCGCCGGCGACGCATTCGACTGGCTGACGCCGTTCAGCCTGCTGACG
GGCCTCGGCCTGATCGCGACCTACGCGCTGCTCGGCTGCTGCTGGCTCGTCGCGAAGACCGAGGGCGACCTGCAGCGCCG
GCTGCATCGCGTCGTATGGCCGCTGACCGTCGTGCTGCTCGGCTTCATCGCGATCGTCAGCCTGTGGACGCCGCTGCAGG
ATCCGGCCATCGCGCAGCGCTGGTTCGATACGGGGCTGTTCTGGCGGCTGCTGCCGGTGCCGTTCCTCGTCGCCGGCTGC
GCGGTGTGGATGCGCCGCGCGGTGCGCGCGCGGCACGACATGACGCCGTTCGTGCTCGCACTCGCGCTCGTGCTGCTCGG
CTACGTCGGGCTGCTCGTGTCGCTGTTCCCGTACGCGATTCCTCAGACGCTGACGATCTGGGAAGCCGCCGCGCCACATT
CGAGCCAGACCTTCACGCTGGTCGGCGCAGCGGTTATCCTGCCGATCATCATCGCCTACACGACGATGGGTTACTGGGTA
TTCCGAGGCAAGGTGCGCCATGAAGACCAGCATTACTACCACCACTGA

Upstream 100 bases:

>100_bases
CGACACGCGCCGCGATCACACCGCGCGCCGCCCGATGTCGGCCGTCGACGAACCGCTCGAGACCGTCTGACCCGCCACCC
CATCCGCATACGAGAAAACT

Downstream 100 bases:

>100_bases
TCGCGCCGACGGTCGGCCCGATGCGCGGCGCCCGCGGATGCGCGGCTGGATGTGGTTCGTCGTACTGTGGGCCGGCGGCG
TGATCGGCGCCGTCACGCTC

Product: cytochrome bd-I oxidase subunit II

Products: NA

Alternate protein names: Cytochrome bd-I oxidase subunit II; Cytochrome d ubiquinol oxidase subunit II [H]

Number of amino acids: Translated: 335; Mature: 335

Protein sequence:

>335_residues
MDVTVIWAAIIALGLFMYVVLDGFDLGIGIVFPFFPDEKERDLMMNTVAPVWDGNETWLVLGGAGLFAVFPVVYSTVLSA
LYLPLIFMLVCLIFRGVSFELRAKARRTKHLWDLAFIGGSAGATFFQGVALGAFLQGIDVKDGVFAGDAFDWLTPFSLLT
GLGLIATYALLGCCWLVAKTEGDLQRRLHRVVWPLTVVLLGFIAIVSLWTPLQDPAIAQRWFDTGLFWRLLPVPFLVAGC
AVWMRRAVRARHDMTPFVLALALVLLGYVGLLVSLFPYAIPQTLTIWEAAAPHSSQTFTLVGAAVILPIIIAYTTMGYWV
FRGKVRHEDQHYYHH

Sequences:

>Translated_335_residues
MDVTVIWAAIIALGLFMYVVLDGFDLGIGIVFPFFPDEKERDLMMNTVAPVWDGNETWLVLGGAGLFAVFPVVYSTVLSA
LYLPLIFMLVCLIFRGVSFELRAKARRTKHLWDLAFIGGSAGATFFQGVALGAFLQGIDVKDGVFAGDAFDWLTPFSLLT
GLGLIATYALLGCCWLVAKTEGDLQRRLHRVVWPLTVVLLGFIAIVSLWTPLQDPAIAQRWFDTGLFWRLLPVPFLVAGC
AVWMRRAVRARHDMTPFVLALALVLLGYVGLLVSLFPYAIPQTLTIWEAAAPHSSQTFTLVGAAVILPIIIAYTTMGYWV
FRGKVRHEDQHYYHH
>Mature_335_residues
MDVTVIWAAIIALGLFMYVVLDGFDLGIGIVFPFFPDEKERDLMMNTVAPVWDGNETWLVLGGAGLFAVFPVVYSTVLSA
LYLPLIFMLVCLIFRGVSFELRAKARRTKHLWDLAFIGGSAGATFFQGVALGAFLQGIDVKDGVFAGDAFDWLTPFSLLT
GLGLIATYALLGCCWLVAKTEGDLQRRLHRVVWPLTVVLLGFIAIVSLWTPLQDPAIAQRWFDTGLFWRLLPVPFLVAGC
AVWMRRAVRARHDMTPFVLALALVLLGYVGLLVSLFPYAIPQTLTIWEAAAPHSSQTFTLVGAAVILPIIIAYTTMGYWV
FRGKVRHEDQHYYHH

Specific function: Cytochrome d terminal oxidase complex is the component of the aerobic respiratory chain that predominates when cells are grown at low aeration [H]

COG id: COG1294

COG function: function code C; Cytochrome bd-type quinol oxidase, subunit 2

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: To E.coli AppB [H]

Homologues:

Organism=Escherichia coli, GI1786954, Length=372, Percent_Identity=27.9569892473118, Blast_Score=143, Evalue=2e-35,
Organism=Escherichia coli, GI1787213, Length=373, Percent_Identity=27.8820375335121, Blast_Score=117, Evalue=8e-28,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003317 [H]

Pfam domain/function: PF02322 Cyto_ox_2 [H]

EC number: 1.10.3.-

Molecular weight: Translated: 37243; Mature: 37243

Theoretical pI: Translated: 7.23; Mature: 7.23

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDVTVIWAAIIALGLFMYVVLDGFDLGIGIVFPFFPDEKERDLMMNTVAPVWDGNETWLV
CCHHHHHHHHHHHHHHHHHHHCCCCCCHHEEECCCCCCCHHHHHHHHCCCCCCCCCEEEE
LGGAGLFAVFPVVYSTVLSALYLPLIFMLVCLIFRGVSFELRAKARRTKHLWDLAFIGGS
EECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHEECCC
AGATFFQGVALGAFLQGIDVKDGVFAGDAFDWLTPFSLLTGLGLIATYALLGCCWLVAKT
CCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
EGDLQRRLHRVVWPLTVVLLGFIAIVSLWTPLQDPAIAQRWFDTGLFWRLLPVPFLVAGC
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
AVWMRRAVRARHDMTPFVLALALVLLGYVGLLVSLFPYAIPQTLTIWEAAAPHSSQTFTL
HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHCCCCCCCCHHHH
VGAAVILPIIIAYTTMGYWVFRGKVRHEDQHYYHH
HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC
>Mature Secondary Structure
MDVTVIWAAIIALGLFMYVVLDGFDLGIGIVFPFFPDEKERDLMMNTVAPVWDGNETWLV
CCHHHHHHHHHHHHHHHHHHHCCCCCCHHEEECCCCCCCHHHHHHHHCCCCCCCCCEEEE
LGGAGLFAVFPVVYSTVLSALYLPLIFMLVCLIFRGVSFELRAKARRTKHLWDLAFIGGS
EECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHEECCC
AGATFFQGVALGAFLQGIDVKDGVFAGDAFDWLTPFSLLTGLGLIATYALLGCCWLVAKT
CCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
EGDLQRRLHRVVWPLTVVLLGFIAIVSLWTPLQDPAIAQRWFDTGLFWRLLPVPFLVAGC
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
AVWMRRAVRARHDMTPFVLALALVLLGYVGLLVSLFPYAIPQTLTIWEAAAPHSSQTFTL
HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHCCCCCCCCHHHH
VGAAVILPIIIAYTTMGYWVFRGKVRHEDQHYYHH
HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: Oxidoreductases; Acting on diphenols and related substances as donors; With oxygen as acceptor [C]

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]